Vagococcus penaei sp. nov., isolated from spoilage microbiota of cooked shrimp (Penaeus vannamei)

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 9, 2010, Pages 2159-2164

  Jaffrès, Emmanuel ^a,b   Prévost, Hervé ^a   Rossero, Albert ^a   Joffraud, Jean Jacques ^b   Dousset, Xavier ^a  

^a LUNAM UNIVERSITÉ   (France)

^b IFREMER   (France)

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDOGLYCAN; BACTERIAL DNA; FATTY ACID; RIBOSOME DNA; RNA 16S;

BACTERIAL CELL WALL; BACTERIAL STRAIN; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; FOOD ORGANISM; FOOD SPOILAGE; GENE SEQUENCE; GRAM POSITIVE BACTERIUM; MICROFLORA; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; REVIEW; SHRIMP; VAGOCOCCUS PENAEI; ANIMAL; CLASSIFICATION; ENTEROCOCCACEAE; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PENAEIDAE; PHYLOGENY;

ANIMALS; DNA, BACTERIAL; DNA, RIBOSOMAL; ENTEROCOCCACEAE; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PENAEIDAE; PHYLOGENY; RNA, RIBOSOMAL, 16S;

DECAPODA (CRUSTACEA); LITOPENAEUS VANNAMEI; VAGOCOCCUS; VAGOCOCCUS CARNIPHILUS; VAGOCOCCUS FESSUS; VAGOCOCCUS FLUVIALIS; VAGOCOCCUS LUTRAE; VAGOCOCCUS SALMONINARUM;

EID: 77956685618     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.012872-0     Document Type: Review

References (31)

1. Al-Ahmad, A., Pelz, K., Schirrmeister, J. F., Hellwig, E. & Pukall, R. (2008). Characterization of the first oral Vagococcus isolate from a root-filled tooth with periradicular lesions. Curr Microbiol 57, 235-238.
2. Cole, J. R., Chai, B., Marsh, T. L., Farris, R. J., Wang, Q., Kulam, S. A., Chandra, S., McGarrell, D. M., Schmidt, T. M. & other authors (2003). The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31, 442-443. (Pubitemid 36150424)
3. Collins, M. D., Ash, C., Farrow, J. A. E., Wallbanks, S. & Williams, A. M. (1989). 16S ribosomal ribonucleic acid sequence analyses of lactococci and related taxa. Description of Vagococcus fluvialis gen. nov., sp. nov. J Appl Bacteriol 67, 453-460. (Pubitemid 19264452)
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229. (Pubitemid 19175038)
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Fischer, W. & Arneth-Seifert, D. (1998). D-Alanylcardiolipin, a major component of the unique lipid pattern of Vagococcus fluvialis. J Bacteriol 180, 2950-2957. (Pubitemid 29122125)
7. Gascuel, O. (1997). BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 14, 685-695.
8. Gevers, D., Huys, G. & Swings, J. (2001). Applicability of rep-PCR fingerprinting for identification of Lactobacillus species. FEMS Microbiol Lett 205, 31-36. (Pubitemid 33135435)
9. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
10. Hashimoto, H., Noborisaka, R. & Yanagawa, R. (1974). Distribution of motile streptococci in man, animals and natural environment. Nippon Saikingaku Zasshi 29, 387-393 (in Japanese).
11. Hoyles, L., Lawson, P. A., Foster, G., Falsen, E., Ohlén, M., Grainger, J. M. & Collins, M. D. (2000). Vagococcus fessus sp. nov., isolated from a seal and a harbour porpoise. Int J Syst Evol Microbiol 50, 1151-1154. (Pubitemid 30333471)
12. Jaffrès, E., Sohier, D., Leroi, F., Pilet, M. F., Prévost, H., Joffraud, J. J. & Dousset, X. (2009). Study of the bacterial ecosystem in tropical cooked and peeled shrimps using a polyphasic approach. Int J Food Microbiol 131, 20-29.
13. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
14. Lawson, P. A., Foster, G., Falsen, E., Ohlén, M. & Collins, M. D. (1999). Vagococcus lutrae sp. nov., isolated from the common otter (Lutra lutra). Int J Syst Bacteriol 49, 1251-1254. (Pubitemid 29320781)
15. Lawson, P. A., Falsen, E., Cotta, M. A. & Whitehead, T. R. (2007). Vagococcus elongatus sp. nov., isolated from a swine-manure storage pit. Int J Syst Evol Microbiol 57, 751-754. (Pubitemid 46711953)
16. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
17. Michel, C., Pelletier, C., Boussaha, M., Douet, D. G., Lautraite, A. & Tailliez, P. (2007). Diversity of lactic acid bacteria associated with fish and the fish farm environment, established by amplified rRNA gene restriction analysis. Appl Environ Microbiol 73, 2947-2955. (Pubitemid 46718578)
18. Pot, B., Devriese, L. A., Hommez, J., Miry, C., Vandemeulebroecke, K., Kersters, K. & Haesebrouck, F. (1994). Characterization and identification of Vagococcus fluvialis strains isolated from domestic animals. J Appl Bacteriol 77, 362-369. (Pubitemid 24316905)
19. Ruiz-Zarzuela, I., de Bias, I., Girones, O., Ghittino, C. & Muazquiz, J. L. (2005). Isolation of Vagococcus salmoninarum in rainbow trout, Oncorhynchus mykiss (Walbaum), broodstocks: characterization of the pathogen. Vet Res Commun 29, 553-562. (Pubitemid 41349216)
20. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
21. Schleifer, K. H. (1985). Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18, 123-156.
22. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
23. Schmidtke, L. M. & Carson, J. (1994). Characteristics of Vagococcus salmoninarum isolated from diseased salmonid fish. J Appl Bacteriol 77, 229-236. (Pubitemid 2120447)
24. Shewmaker, P. L., Steigerwalt, A. G., Morey, R. E., Carvalho, M. G. S., Elliott, J. A., Joyce, K., Barrett, T. J., Teixeira, L. M. & Facklam, R. R. (2004). Vagococcus carniphilus sp. nov., isolated from ground beef. Int J Syst Evol Microbiol 54, 1505-1510.
25. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
26. Stackebrandt, E., Frederiksen, W., Garrity, G. M., Grimont, P. A. D., Kämpfer, P., Maiden, M. C. J., Nesme, X., Rosselló-Mora, R., Swings, J. & other authors (2002). Report of the ad hoc committee for the reevaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52, 1043-1047.
27. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
28. Teixeira, L. M., Carvalho, M. G. S., Merquior, V. L. C., Steigerwalt, A. G., Brenner, D. J. & Facklam, R. R. (1997). Phenotypic and genotypic characterization of Vagococcus fluvialis, including strains isolated from human sources. J Clin Microbiol 35, 2778-2781.
29. Valcheva, R., Ferchichi, M. F., Korakli, M., Ivanova, I., Gänzle, M. G., Vogel, R. F., Prévost, H., Onno, B. & Dousset, X. (2006). Lactobacillus nantensis sp. nov., isolated from French wheat sourdough. Int J Syst Evol Microbiol 56, 587-591.
30. Wallbanks, S., Martinez-Murcia, A. J., Fryer, J. L., Phillips, B. A. & Collins, M. D. (1990). 16S rRNA sequence determination for members of the genus Carnobacterium and related lactic acid bacteria and description of Vagococcus salmoninarum sp. nov. Int J Syst Bacteriol 40, 224-230.
31. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.