Diversity of lactic acid bacteria associated with fish and the fish farm environment, established by amplified rRNA gene restriction analysis

Applied and Environmental Microbiology

Volumn 73, Issue 9, 2007, Pages 2947-2955

  Michel, Christian ^a   Pelletier, Claire ^b   Boussaha, Mekki ^a   Douet, Diane Gaëlle ^c   Lautraite, Armand ^c   Tailliez, Patrick ^d  

^a INRA Institut National de la Recherche Agronomique   (France)

^b Lab Départemental des Landes   (France)

^c Groupement Defense Sanitaire A   (France)

^d University of Montpellier II   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DISEASES; FISH; GENES; LACTIC ACID; RNA;

FISH FARM ENVIRONMENT; LACTIC ACID BACTERIA; RRNA GENE RESTRICTION ANALYSIS; STREPTOCOCCUS INIAE;

BACTERIA;

RIBOSOME RNA; RNA 16S;

AQUACULTURE; BACTERIUM; COMMENSALISM; FOOD PROCESSING; GENETIC ANALYSIS; HOST-PATHOGEN INTERACTION; IDENTIFICATION METHOD; MORTALITY; POPULATION STRUCTURE; RNA; SPECIES DIVERSITY;

ARTICLE; BACTERIUM ISOLATE; CARNOBACTERIUM; CLUSTER ANALYSIS; CONTROLLED STUDY; ENTEROCOCCUS FAECIUM; FISH; FOOD PROCESSING; GENE; GENE AMPLIFICATION; GENE CLUSTER; LACTIC ACID BACTERIUM; LACTOCOCCUS; LACTOCOCCUS GARVIEAE; LACTOCOCCUS LACTIS; LACTOCOCCUS RAFFINOLACTIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPPORTUNISTIC INFECTION; PISCICULTURE; RESTRICTION MAPPING; SODA GENE; STREPTOCOCCUS AGALACTIAE; STREPTOCOCCUS DYSGALACTIAE; STREPTOCOCCUS INIAE; STREPTOCOCCUS PARAUBERIS;

AEROCOCCUS; BACTERIA (MICROORGANISMS); CARNOBACTERIUM; ENTEROCOCCUS; ENTEROCOCCUS FAECIUM; LACTOCOCCUS; LACTOCOCCUS GARVIEAE; LACTOCOCCUS LACTIS; LACTOCOCCUS RAFFINOLACTIS; STREPTOCOCCUS INIAE; VAGOCOCCUS FLUVIALIS;

EID: 34248144321     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.01852-06     Document Type: Article

References (47)

1. Altun, S., Ö. Diler, and A. K. Adiloglu. 2004. Genotyping of Lactococcus garvieae strains from rainbow trout (Oncorhynchus mykiss) by 16S rDNA sequencing. Bull. Eur. Assoc. Fish Pathol. 24:119-124.
2. Aoki, T., C.-I. Park, H. Yamashita, and I. Horono. 2000. Species-specific polymerase chain reaction primers for Lactococcus garvieae. J. Fish Dis. 23:1-6.
3. Berridge, B. R., H. Bercovier, and P. F. Frelier. 2001. Streptococcus agalactiae and Streptococcus difficile 16S-23S intergenic rDNA: genetic homogeneity and species-specific PCR. Vet. Microbiol. 78:165-173.
4. Berridge, B. R., J. D. Fuller, J. D. E. Azavedo, D. E. Low, H. Bercovier, and P. F. Frelier. 1998. Development of specific nested oligonucleotide PCR primers for the Streptococcus iniae 16S-23S ribosomal DNA intergenic spacer. J. Clin. Microbiol. 36:2778-2781.
5. Cai, Y. M., P. Suyanandana, P. Saroan, and Y. Benno. 1999. Classification and characterization of lactic acid bacteria isolated from the intestines of common carp and freshwater prawns. J. Gen. Appl. Microbiol. 45:177-184.
6. Chenoll, E., M. C. Macián, and R. Aznar. 2003. Identification of Carnobacterium, Lactobacillus. Leuconostoc and Pediococcus by rDNA-based techniques. Syst. Appl. Microbiol. 26:546-556.
7. Cibik, R., E. Lepage, and P. Tailliez. 2000. Molecular diversity of Leuconostoc mesenteroides and Leuconostoc citreum isolated from traditional French cheeses as revealed by RAPD fingerprinting, 16S rDNA sequencing and 16S rDNA fragment amplification. Syst. Appl. Microbiol. 23:267-278.
8. De Buzon, S., C. Couture, M. Beyrie, A. Lautraite, and C. Pelletier. 2001. Identification of fish pathogenic gram positive cocci using polymerase chain reaction-restriction fragment length polymorphism analysis, abstr. 1P-053. Abstr. 10th Int. Conf. Eur. Assoc. Fish Pathol.
9. Dodson, S. V., J. J. Maurer, and E. B. Shotts. 1999. Biochemical and molecular typing of Streptococcus iniae isolated from fish and human cases. J. Fish Dis. 22:331-336.
10. Domenech, A., J. F. Femandez-Garayzabal, C. Pascual, J. A. Garcia, M. T. Cutuli, M. A. Moreno, M. D. Collins, and L. Dominguez. 1996. Streptococcosis in cultured turbot, Scophthalmus maximus (L.), associated with Streptococcus parauberis. J. Fish Dis. 19:33-38.
11. Eldar, A., C. Ghittino, L. Asanta, E. Bozzeta, M. Goria, M. Prearo, and H. Bercovier. 1996. Enterococcus seriolicida is a junior synonym of Lactococcus garvieae, a causative agent of septicemia and meningoencephalitis in fish. Curr. Microbiol. 32:85-88.
12. Eyngor, M., A. Zlotkin, C. Ghittino, M. Prearo, D.-G. Douet, S. Chilmonczyk, and A. Eldar. 2004. Clonality and diversity of the fish pathogen Lactococcus garvieae in Mediterranean countries. Appl. Environ. Microbiol. 70:5132-5137.
13. Fefer, J. J., R. Ratzan, S. E. Sharp, and E. Saiz. 1998. Lactococcus garvieae endocarditis: report of a case and review of the literature. Diagn. Microbiol. Infect. Dis. 32:127-130.
14. Fox, G. E., J. D. Wisotzkey, and P. Jurtshuk, Jr. 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42:166-170.
15. Fuller, J. D., D. J. Bast, V. Nizet, D. E. Low, and J. C. S. de Azavedo. 2001. Streptococcus iniae virulence is associated with a distinct genetic profile. Infect. Immun. 69:1994-2000.
16. Gurtler, V., V. A. Wilson, and B. C. Mayall. 1991. Classification of medically important Clostridia using restriction endonuclease site differences of PCR-amplified 16S rDNA. J. Gen. Microbiol. 137:2673-2679.
17. Jöborn, A., M. Dorsch, J. C. Olsson, A. Westerdahl, and S. Kjelleberg. 1999. Carnobacterium inhibens sp. nov., isolated from the intestine of Atlantic salmon (Salmo salar). Int. J. Syst. Bacteriol. 49:1891-1898.
18. Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In H. N. Munro (ed.), Mammalian protein metabolism, vol. 3. Academic Press, New York, NY.
19. Kanoe, M., and T. Abe. 1988. Enterococcal isolates from environmental sources. Microbios Lett. 38:15-20.
20. Kusuda, R., K. Kawai, F. Salati, C. R. Banner, and J. L. Fryer. 1991. Enterococcus seriolicida sp. nov., a fish pathogen. Int. J. Syst. Bacteriol. 41:406-409.
21. Kusuda, R., and F. Salati. 1999. Enterococcus seriolicida and Streptococcus iniae, p. 303-317. In P. T. K. Woo and D. W. Bruno (ed.), Fish diseases and disorders, vol. 3. Viral, bacterial and fungus infections. Cabi International, New York, NY.
22. Mata, A. I., M. M. Blanco, L. Dominguez, J. F. Femandez-Garayzabal, and A. Gibello. 2004. Development of a PCR assay for Streptococcus iniae based on the lactate oxidase (lctO) gene with potential diagnostic value. Vet. Microbiol. 101:109-116.
23. Mata, A. I., A. Gibello, A. Casamayor, M. M. Blanco, L. Dominguez, and J. F. Fernández-Garayzábal. 2004. Multiple PCR assay for detection of bacterial pathogens associated with warm-water streptococcosis in fish. Appl. Environ. Microbiol. 70:3183-3187.
24. Mauguin, S., and G. Novel. 1994. Characterization of lactic acid bacteria isolated from seafood. J. Appl. Bacteriol. 76:616-625.
25. McDonald, W. L., B. N. Fry, and M. A. Deighton. 2005. Identification of Streptococcus spp. causing bovine mastitis by PCR-RFLP of 16S-23S ribosomal DNA. Vet. Microbiol. 111:241-246.
26. Michel, C., B. Faivre, and B. Kerouault. 1986. Biochemical identification of Lactobacillus piscicola strains from France and Belgium. Dis. Aquat. Organ. 2:27-30.
27. Michel, C., P. Nougayrède, A. Eldar, E. Sochon, and P. D. Kinkelin. 1997. Vagococcus salmoninarum, a bacterium of pathological significance in rainbow trout Oncorhynchus mykiss farming. Dis. Aquat. Organ. 30:199-208.
28. Nomoto, R., L. Munasinghe, D. Jin, Y. Shimahara, H. Yasuda, A. Nakamura, N. Misawa, T. Itami, and T. Yoshida. 2004. Lancefield group C Streptococcus dysgalactiae infection responsible for fish mortalities in Japan. J. Fish Dis. 27:679-686.
29. Petersen, A., and A. Dalsgaard. 2003. Species composition and antimicrobial resistance genes of Enterococcus spp., isolated from integrated and traditional fish farms in Thailand. Environ. Microbiol. 5:395-402.
30. Poyart, C., P. Berche, and P. Trieu-Cuot. 1995. Characterization of super-oxide dismutase genes from gram-positive bacteria by polymerase chain reaction using degenerate primers. FEMS Microbiol. Lett. 131:41-45.
31. Poyart, C., G. Quesnes, and P. Trieu-Cuot. 2000. Sequencing the gene encoding manganese-dependent superoxide dismutase for rapid species identification of enterococci. J. Clin. Microbiol. 38:415-418.
32. Rachman, C., P. Kabadjova, R. Valcheva, H. Prevost, and X. Dousset. 2004. Identification of Camobacterium species by restriction fragment length polymorphism of the 16S-23S rRNA gene intergenic spacer region and species-specific PCR. Appl. Environ. Microbiol. 70:4468-4477.
33. Ringø, E., and F.-J. Gatesoupe. 1998. Lactic acid bacteria in fish: a review. Aquaculture 160:177-203.
34. Robinson, J. A., and F. P. Meyer. 1966. Streptococcal fish pathogen. J. Bacteriol. 92:512.
35. Sakala, R. M., H. Hayashidani, Y. Kato, C. Kaneuchi, and M. Ogawa. 2002. Isolation and characterization of Lactococcus piscium strains from vacuum-packaged refrigerated beef. J. Appl. Microbiol. 92:173-179.
36. Schillinger, U., and F. K. Lucke. 1986. Lactic acid bacteria on vacuum-packaged meat and influence on shelf life. Fleischwirtschung 66:1515-1520.
37. Schlegel, L., F. Grimont, P. A. Grimont, and A. Bouvet. 2003. Identification of major streptococcal species by rrn-amplified ribosomal DNA restriction analysis. J. Clin. Microbiol. 41:657-666.
38. Schmidtke, L. M., and J. Carson. 1994. Characteristics of Vagococcus salmoninarum isolated from diseased salmonid fish. J. Appl. Bacteriol. 77:229-236.
39. Shewmaker, P. L., A. G. Steigerwalt, R. E. Morey, M.-G. S. Carvalho, J. A. Eliott, K. Joyce, T. J. Barrett, L. M. Teixeria, and R. R. Facklam. 2004. Vagococcus carniphilus sp. nov., isolated from ground beef. Int. J. Syst. Evol. Microbiol. 54:1505-1510.
40. Swofford, D. L. (ed.). 2003. PAUP*. Phylogenetic analysis using parsimony (and other methods), version 4.ob 10. Sinauer Associates, Sunderland, MA.
41. Toranzo, A. E., J. L. Romalde, S. Núñez, A. Figueras, and J. L. Barja. 1993. An epizootic in farmed, market-size rainbow trout in Spain caused by a strain of Camobacterium piscicola of unusual virulence. Dis. Aquat. Organ. 17:87-99.
42. Ueda, K., T. Seki, T. Kudo, T. Yoshida, and M. Kataoka. 1999. Two distinct mechanisms cause heterogeneity of 16S rRNA. J. Bacteriol. 181:78-82.
43. Vandamme, P., L. A. Devriese, B. Pot, K. Kersters, and P. Melin. 1997. Streptococcus difficile is a nonhemolytic group B, type lb streptococcus. Int. J. Syst. Bacteriol. 47:81-85.
44. Vela, A. I., J. Vásquez, A. Gibello, M. M. Blanco, M. A. Moreno, P. Liébana. C. Albendea, B. Alcalá, A. Mendez, L. Domínguez, and J. F. Fernández-Garayzábal. 2000. Phenotypic and genetic characterization of Lactococcus garvieae isolated in Spain from lactococcosis outbreaks and comparison with isolates of other countries and sources. J. Clin. Microbiol. 38:3791-3795.
45. Weinstein, M. R., M. Litt, D. A. Kertesz, P. Wyper, D. Rose, M. Coulter, A. McGeer, R. Facklam, C. Ostach, B. M. Willey, A. Borczyck, and E. D. Low. 1997. Invasive infections due to a fish pathogen, Streptococcus iniae. N. Engl. J. Med. 337:589-594.
46. Williams, A. M., J. L. Fryer, and M. D. Collins. 1990. Lactococcus piscium sp. nov. a new Lactococcus species from salmonid fish. FEMS Microbiol. Lett. 68:109-114.
47. Zlotkin, A., A. Eldar, C. Ghittino, and H. Bercovier. 1998. Identification of Lactococcus garvieae by PCR. J. Clin. Microbiol. 36:983-985.