Testing hybridization hypotheses and evaluating the evolutionary potential of hybrids in mangrove plant species

Journal of Evolutionary Biology

Volumn 23, Issue 10, 2010, Pages 2249-2261

  Lo, E Y Y ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

Indo West Pacific; Interspecific hybridization; Mangroves; Maternal origins; NewHybrids; Phylogeny; Rhizophora; Speciation

Indexed keywords

CHLOROPLAST DNA;

BAYESIAN ANALYSIS; CHLOROPLAST; DICOTYLEDON; FLOWERING; GENETIC MARKER; HYBRID; HYBRIDIZATION; MANGROVE; PHYLOGENETICS; PLANT COMMUNITY; SPECIATION (BIOLOGY); SPECIES DIVERSITY;

ARTICLE; BIODIVERSITY; GENETICS; HYBRIDIZATION; PHYLOGENY; RHIZOPHORACEAE; SPECIES DIFFERENTIATION;

BIODIVERSITY; DNA, CHLOROPLAST; GENETIC SPECIATION; HYBRIDIZATION, GENETIC; PHYLOGENY; RHIZOPHORACEAE;

RHIZOPHORA; RHIZOPHORACEAE;

EID: 77956590040     PISSN: 1010061X     EISSN: 14209101     Source Type: Journal    
DOI: 10.1111/j.1420-9101.2010.02087.x     Document Type: Article

References (103)

1. Aldridge G, Campbell DR. Asymmetrical pollen success in Ipomopsis (Polemoniaceae) contact sites. Am. J. Bot. 2006, 93:903-909.
2. Aldridge G, Campbell DR. Genetics and morphological patterns show variation frequency in hybrids between Ipomopsis (Polemoniaceae) zones of sympatry. Heredity 2009, 102:257-265.
3. Anderson EC. User's guide to the program NEWHYBRIDS 2003, version 1.1 beta
4. Anderson EC. Bayesian inference of species hybrids using multilocus dominant genetic markers. Philos. Trans. R. Soc. Lond. B Biol. Sci. 2008, 363:2841-2850.
5. Bornet B, Muller C, Paulus F, Branchard M. High informative native of inter simple sequence repeat (ISSR) sequences amplified with tri- and tetra-nucleotide primers from cauliflower (Brassica oleracea var. botrytis) DNA. Genome 2002, 45:890-896.
6. Buggs RJA, Soltis P, Solits D. Does hybridization between divergent progenitors drive whole-genome duplication? Mol. Ecol. 2009, 18:3334-3339.
7. Burgarella C, Lorenzo Z, Jabbour-Zahab R, Lumaret R, Guichoux E, Petit RJ, Soto A, Gil L. Detection of hybrids in nature: application to oaks (Quercus suber and Q. ilex). Heredity 2009, 102:442-452.
8. Burgess KS, Husband BC. Maternal and paternal contributions to the fitness of hybrids between red and white mulberry (Morus; Moraceae). Am. J. Bot. 2004, 91:1802-1808.
9. Cerón-Souza I, Rivera-Ocasio E, Medina E, Jiménez JA, McMillan WO, Bermingham E. Hybridization and introgression in New World red mangroves, Rhizophora (Rhizophoraceae). Am. J. Bot. 2010, 97:945-957.
10. Chapman M, Burke JM. Genetic divergence and hybrid speciation. Evolution 2007, 61:1773-1780.
11. Conesa MA, Mus M, Rossello JA. Hybridization between insular endemic and widespread species of Viola in non-disturbed environments assessed by nuclear ribosomal and cpDNA sequences. Plant Syst. Evol. 2008, 273:169-177.
12. Doyle JJ. Gene trees and species trees: molecular systematics as one-character taxonomy. Syst. Bot. 1992, 17:144-163.
13. Duke NC. A mangrove hybrid, Sonneratia × gulngai (Sonneratia) from North-eastern Australia. Austrobaileya 1984, 2:103-105.
14. Duke NC. Mangrove floristics and biogeography. Tropical Mangrove Ecosystems 1992, 63-100. Robertson AIAlongi DM. In, eds, pp, American Geophysical Union, Washington, DC
15. Duke NC, Bunt JS. The genus Rhizophora (Rhizophoraceae) in North-eastern Australia. Aust. J. Bot. 1979, 29:657-678.
16. Duke NC, Bunt JS, Williams WT. Observations of the flora and vegetative phenologies of Northeastern Australian mangroves. Aust. J. Bot. 1984, 29:87-99.
17. Duke NC, Lo EYY, Sun M. Distribution and genetic discontinuities of mangroves: emerging patterns in the evolution of Rhizophora. Trees 2002, 16:65-79.
18. Ellstrand NC, Whitkus R, Rieseberg LH. Distribution of spontaneous plant hybrids. Proc. Natl. Acad. Sci. USA 1996, 93:5090-5093.
19. Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. Notes 2005, 14:2611-2620.
20. Falush D, Stephens M, Pritchard JK. Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol. Ecol. Notes 2007, 13:895-908.
21. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
22. Funk DJ, Omland KE. Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Ann. Rev. Ecol. Evol. Syst. 2003, 34:397-423.
23. Garcia-Maroto F, Garrido-Cardenas JA, Gomez-Mercado F. Natural hybridisation and phylogenetic position of Saxifraga trabutiana (Saxifragaceae) inferred from ISSR markers and ITS sequences. Ann. Bot. Fenn. 2003, 40:5-13.
24. Gaskin JF, Wheeler GS, Purcell MF, Taylors GS. Molecular evidence of hybridization in Florida's sheoak (Casuarina spp.) invasion. Mol. Ecol. 2009, 18:3216-3226.
25. Guppy HB. Observations of a Naturalist in the Pacific Between 1896 & 1899: Plant Dispersal 1906, Vol. 2, Macmillan, London
26. Hamilton MB. Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation. Mol. Ecol. 1999, 8:513-525.
27. Hauser TP, Shaw RG, Ostergard H. Fitness ofF1 hybrids between weedy Brassica rapa and oilseed rape(B. napus). Heredity 1998a, 81:429-435.
28. Hauser TP, Shaw RG, Ostergard H. Fitness of backcross and F2 hybrids between weedy Brassica rapa and oilseed rape (B. napus). Heredity 1998b, 81:436-443.
29. Howard DJ. Conspecific sperm and pollen precedence and speciation. Annu. Rev. Ecol. Syst. 1999, 30:109-132.
30. Ioos R, Barres B, Andrieux A, Frey P. Characterization of microsatellite markers in the interspecific hybrid Phytophthora alni ssp. alni, and cross-amplification with related taxa. Mol. Ecol. Notes 2007, 7:133-137.
31. Islam MS, Lian C, Kameyama N. Development of microsatellite markers in Rhizophora stylosa using a dual-suppression-polymerase chain reaction technique. Mol. Ecol. Notes 2004, 4:110-112.
32. Jayatissa LP, Dahdouh-Guebas F, Koedam N. A review of the floral composition and distribution of mangroves in Sri Lanka. Bot. J. Linn. Soc. 2002, 138:29-43.
33. Kathiresan K, Ravikumar S. Vegetation propagation through air-layering in species of mangroves. Aquat. Bot. 1995, 50:107-110.
34. Kimball S, Campbell DR, Lessin C. Differential performance of reciprocal hybrids in multiple environments. J. Ecol. 2008, 96:1306-1318.
35. Kitamura S, Anwar C, Chaniago A, Baba S. Handbook of Mangroves in Indonesia 1997, International Society for Mangrove Ecosystem (ISME), Okinawa, Japan
36. Legendre L, Legendre P. Numerical Ecology. Developments in Environmental Modeling 1983, Elsevier Scientific Publishing Company, Amsterdam, The Netherlands
37. Levin D. The cytoplasmic factor in plant speciation. Syst. Bot. 2003, 28:5-11.
38. Levsen ND, Mort ME. Inter-simple sequence repeat (ISSR) and morphological variation in the western North American range of Chrysosplenium tetrandrum (Saxifragaceae). Botany 2009, 87:780-790.
39. Liebst B, Schneller J. How selfing and intra- and interspecific crossing influence seed set, morphology and ploidy level in Euphrasia: an experimental study of species occurring in the Alps of Switzerland. Plant Syst. Evol. 2005, 255:93-214.
40. Lim KY, Matyasek R, Kovarik A, Leitch A. Parental origin and genome evolution in the allopolyploid Iris versicolor. Ann. Bot. 2007, 100:219-224.
41. Linder CR, Rieseberg LH. Reconstructing patterns of reticulate evolution in plants. Am. J. Bot. 2004, 91:1700-1708.
42. Mahe L, Le Pierres D, Combes MC. Introgressive hybridization between the allotetraploid Coffea arabica and one of its diploid ancestors, Coffea canephora, in an exceptional sympatric zone in New Caledonia. Genome 2007, 50:316-324.
43. Mallet J. Hybrid speciation. Nature 2007, 446:279-283.
44. Mc-Gregor CE, Lambert CA, Greyling MM, Louw JH, Warnich L. A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP and SSR) in tetraploid potato (Solanum tuberosum L.) germplasm. Euphytica 2000, 113:135-144.
45. Milne RI, Abbott RJ. Reproductive isolation among two interfertile Rhododendron species: low frequency of post-F1 hybrid genotypes in alpine hybrid zones. Mol. Ecol. 2008, 17:1108-1121.
46. Minder MA, Widmer A. A population genomic analysis of species boundaries: neutral processes, adaptive divergence and introgression between two hybridizing plant species. Mol. Ecol. 2008, 17:1552-1563.
47. Mogensen HL. The hows and whys of cytoplasmic inheritance in seed plants. Am. J. Bot. 1996, 83:383-404.
48. Nagaoka T, Ogihara Y. Applicability of inter-simple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theor. Appl. Genet. 1997, 94:597-602.
49. Olmstead RG, Palmer JD. Chloroplast DNA systematics: a review of methods and data analysis. Am. J. Bot. 1994, 81:1203-1224.
50. Ozkan H, Tuna M, Galbraith DW. No DNA loss in autotetraploids of Arabidopsis thaliana. Plant Breed. 2006, 125:288-291.
51. Parani M, Rao CS, Mathan N, Anuratha CS, Narayanan KK, Parida A. Parentage analysis of a Rhizophora hybrid using random amplified polymorphic DNA (RAPD) and restriction fragment length polymorphism (RFLP) markers. Aquat. Bot. 1997, 58:165-172.
52. Paun O, Felix F, Fay M, Chase MW. Hybrid speciation in angiosperm: parental divergence drives ploidy. New Phytol. 2009, 182:507-518.
53. Pelabon C, Carlson ML, Hansen TF. Effects of crossing distance on offspring fitness and developmental stability in Dalechampia scandens (Euphorbiaceae). Am. J. Bot. 2005, 92:842-851.
54. Pollegioni P, Major A, Bartoli S, Ducci F, Proietti R, Malvolti ME, Avanzto D. Application of microsatellite and dominant molecular markers for the discrimination of species and interspecific hybrids in the genus Juglans. Acta Hortic. 2004, 705:191-197.
55. Posada D, Crandall KA. Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
56. Pritchard JK, Wen W. Documentation for the STRUCTURE software Version 2 2004, http://pritch.bsd.uchicago.edu/structure.html, Chicago
57. Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
58. Qiu L, Zhou RC, Li YQ. Molecular evidence for natural hybridization between Sonneratia alba and S. griffithii. J. Syst. Evol. 2008, 46:391-395.
59. Rabinowitz D. Dispersal properties of the mangrove propagules. Biotropica 1978, 10:47-57.
60. Rahme J, Widmer A, Karrenberg S. Pollen competition as an asymmetric reproduction barrier between two closely related Silene species. J. Evol. Biol. 2009, 22:1937-1943.
61. Rambaut A. Se-Al Sequence Alignment Editor v2.0a11 2002, University of Oxford, Oxford
62. Rieseberg LH. Hybrid origins of plant species. Trends Ecol. Evol. 1997, 28:359-389.
63. Rieseberg LH. Chromosome rearrangements and speciation. Trends Ecol. Evol. 2001, 16:351-358.
64. Rieseberg LH, Willis JH. Plant speciation. Science 2007, 317:910-914.
65. Rieseberg LH, Archer MA, Wayne RK. Transgressive segregation, adaptation and speciation. Heredity 1999, 83:363-372.
66. Rieseberg L, Baird S, Gardner K. Hybridization, introgression, and linkage evolution. Plant Mol. Biol. 2000, 42:205-224.
67. Rieseberg LH, Wood TE, Baack EJ. The nature of plant species. Nature 2006, 440:524-537.
68. Rosenberg NA. DISTRUCT: a program for the graphical display of population structure. Mol. Ecol. Notes 2004, 4:137-138.
69. Rosero-Galindo C, Gaitan-Solis E, Cardernas-Henao H. Polymorphic microsatellites in a mangrove species, Rhizophora mangle L. (Rhizophoraceae). Mol. Ecol. Notes 2002, 2:281-283.
70. Saenger P. Mangrove vegetation: an evolutionary perspective. Mar. Freshw. Res. 1998, 49:277-286.
71. Sahoo DP, Aparajita S, Rout GR. Inter and intra-population variability of Pongamia pinnata: a bioenergy legume tree. Plant Syst. Evol. 2010, 285:121-125.
72. Saito Y, Moller M, Kokubugata G. Molecular evidence for repeated hybridization events involved in the origin of the genus ×Crepidiastrixeris (Asteraceae) using RAPDs and ITS data. Bot. J. Linn. Soc. 2006, 15:333-343.
73. Salvoza FM. Rhizophora. Nat. Appl. Sci. Bull. Un. Phillip. 1936, 5:179-237.
74. Sang T, Zhong Y. Testing hybridization hypotheses based on incongruent gene trees. Syst. Biol. 2000, 49:422-434.
75. Sang T, Crawford DJ, Stuessy TF. Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: implications for biogeography and concerted evolution. Proc. Natl. Acad. Sci. USA 1995, 92:6813-6817.
76. Schlotterer C, Tautz D. Chromosomal homogeneity of Drosophila ribosomal DNA arrays suggests intrachromosomal exchanges drive concerted evolution. Curr. Biol. 1994, 4:777-783.
77. Soltis PS, Soltis DE. The role of hybridization in plant speciation. Annu. Rev. Plant Biol. 2009, 60:561-588.
78. Soltis DE, Mavrodiev EV, Doyle JJ, Rauscher J, Soltis PS. ITS and ETS sequence data and phylogeny reconstruction in allopolyploids and hybrids. Syst. Bot. 2008, 33:7-20.
79. Stamatakis A, Ludwig T, Meier H. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 2005, 21:456-463.
80. Stamatakis A, Hoover P, Rougemont J. A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 2008, 57:758-771.
81. Stelkens R, Seehausen O. Genetic distance between species predicts novel trait expression in their hybrids. Evolution 2009, 63:884-897.
82. Swanson R, Edlund AF, Preuss D. Species specificity in pollen-pistil interactions. Annu. Rev. Genet. 2004, 38:793-818.
83. Swofford DL. PAUP* Phylogenetic Analysis Using Parsimony 2002, (*and other methods), Version 4.0b2a, Sinauer Associates, Sunderland, MA
84. Szczepaniak M, Cieslak E, Bednarek PT. Natural hybridization between Elymus repens and Elymus hispidus assessed by AFLP analysis. Acta Soc. Bot. Pol. Pol. Tow. Bot. 2007, 76:225-234.
85. Thompson JD, Higgins DG, Gibson TJ. ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties, and weight matrix choice. Nucleic Acids Res. 1997, 22:4673-4680.
86. Tiffin P, Olson MS, Moyle LC. Asymmetrical crossing barrier in angiosperms. Proc. R. Soc. Lond. B Biol. 2001, 268:861-867.
87. Tomlinson PB. The Botany of Mangroves 1986, Cambridge University Press, Cambridge
88. Tomlinson PB. The Botany of Mangroves 1996, Cambridge University Press, Cambridge
89. Tomlinson PB, Bunt JS, Primack RB, Duke NC. Lumnitzera rosea (Combretaceae)-its status and floral morphology. J. Arnold Arbor. 1978, 59:342-351.
90. Triest L. Molecular ecology and biogeography of mangrove trees towards conceptual insights on gene flow and barriers: a review. Aquat. Bot. 2008, 89:138-154.
91. Tsitrone A, Kirjpatrick M, Levin D. A model for chloroplast capture. Evolution 2003, 57:1776-1782.
92. Tsumura Y, Yoshimura K, Tomaru N, Ohba K. Molecular phylogeny of conifers using RFLP analysis of PCR-amplified specific chloroplast genes. Theor. Appl. Genet. 1995, 91:1222-1236.
93. Tyagi AP. Precipitation effects on flowering and propagule setting in mangrove of the family Rhizophoraceae. Aust. J. Bot. 2004, 52:789-798.
94. Tyagi AP, Singh VV. Pollen fertility and intraspecific and interspecific compatibility in mangroves of Fiji. Sex. Plant Reprod. 1998, 11:60-63.
95. Vaillancourt RE, Jackson HD. A chloroplast DNA hypervariable region in eucalypts. Theor. Appl. Genet. 2000, 101:473-477.
96. Voilokov AV, Tikhenko ND. Genetics of postzygotic reproductive isolation in plants. Russ. J. Genet. 2009, 45:637-650.
97. Weng R, Chen Z, Huang X. Chromosome counts on Chinese mangroves. J. Trop. Subtrop. Bot. 1998, 6:40-46.
98. White TJ, Bruns T, Lee S, Taylor J. Amplification and direct sequencing of fungal ribosomal genes for phylogenies. PCR Protocols: A Guide to Methods and Applications 1990, 315-322. Innis M, Gelfand D, Sninsky J, White T. In, eds, pp, Academic Press, San Diego, California
99. Wolfe AD, Liston A. Contributions of PCR-based methods to plant systematics and evolutionary biology. Molecular Systematics of Plants II: DNA Sequencing 1998, 43-86. Soltis DE, Soltis PSDoyle JJ. In, eds, pp, Kluwer Academic Publishers, Boston
100. Wolfe AD, Xiang QY, Kephart SR. Diploid hybrid speciation in Penstemon (Scrophulariaceae). Proc. Natl. Acad. Sci. USA 1998a, 95:5112-5115.
101. Wolfe AD, Xiang QY, Kephart SR. Assessing hybridization in natural populations of Penstemon (Scrophulariaceae) using hypervariable inter simple sequence repeat (ISSR) bands. Mol. Ecol. 1998b, 7:1107-1125.
102. Zha HG, Milne RI, Sun H. Asymmetrical hybridization in Rhododendron agastum: a hybrid taxon comprising mainly F1s in Yunnan, China. Ann. Bot. 2010, 105:89-100.
103. Zhou R, Gong X, Boufford D, Wu CI, Shi S. Testing a hypothesis of unidirectional in plants: observation on Sonneratia, Bruguiera, and Ligularia. BMC Evol. Biol. 2008, 8:149-156.