-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium
-
Lander, E.S., Linton, L.M., Birren, B., Nusbaum, C., Zody, M.C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W., Funke, R., Gage, D., Harris, K., Heaford, A., Howland, J., Kann, L., Lehoczky, J., LeVine, R., McEwan, P., McKernan, K., Meldrim, J., Mesirov, J.P., Miranda, C., Morris, W., Naylor, J., Raymond, C., Rosetti, M., Santos, R., Sheridan, A., Sougnez, C., Stange-Thomann, N., Stojanovic, N., Subramanian, A., Wyman, D., Rogers, J., Sulston, J., Ainscough, R., Beck, S., Bentley, D., Burton, J., Clee, C., Carter, N., Coulson, A., Deadman, R., Deloukas, P., Dunham, A., Dunham, I., Durbin, R., French, L., Grafham, D., Gregory, S., Hubbard, T., Humphray, S., Hunt, A., Jones, M., Lloyd, C., McMurray, A., Matthews, L., Mercer, S., Milne, S., Mullikin, J.C., Mungall, A., Plumb, R., Ross, M., Shownkeen, R., Sims, S., Waterston, R.H., Wilson, R.K., Hillier, L.W., McPherson, J.D., Marra, M.A., Mardis, E.R., Fulton, L.A., Chinwalla, A.T., Pepin, K.H., Gish, W.R., Chissoe, S.L., Wendl, M.C., Delehaunty, K.D., Miner, T.L., Delehaunty, A., Kramer, J.B., Cook, L.L., Fulton, R.S., Johnson, D.L., Minx, P.J., Clifton, S.W., Hawkins, T., Branscomb, E., Predki, P., Richardson, P., Wenning, S., Slezak, T., Doggett, N., Cheng, J.F., Olsen, A., Lucas, S., Elkin, C., Uberbacher, E., Frazier, M., Gibbs, R.A., Muzny, D.M., Scherer, S.E., Bouck, J.B., Sodergren, E.J., Worley, K.C., Rives, C.M., Gorrell, J.H., Metzker, M.L., Naylor, S.L., Kucherlapati, R.S., Nelson, D.L., Weinstock, G.M., Sakaki, Y., Fujiyama, A., Hattori, M., Yada, T., Toyoda, A., Itoh, T., Kawagoe, C., Watanabe, H., Totoki, Y., Taylor, T., Weissenbach, J., Heilig, R., Saurin, W., Artiguenave, F., Brottier, P., Bruls, T., Pelletier, E., Robert, C., Wincker, P., Smith, D.R., Doucette-Stamm, L., Rubenfield, M., Weinstock, K., Lee, H.M., Dubois, J., Rosenthal, A., Platzer, M., Nyakatura, G., Taudien, S., Rump, A., Yang, H., Yu, J., Wang, J., Huang, G., Gu, J., Hood, L., Rowen, L., Madan, A., Qin, S., Davis, R.W., Federspiel, N.A., Abola, A.P., Proctor, M.J., Myers, R.M., Schmutz, J., Dickson, M., Grimwood, J., Cox, D.R., Olson, M.V., Kaul, R., Raymond, C., Shimizu, N., Kawasaki, K., Minoshima, S., Evans, G.A., Athanasiou, M., Schultz, R., Roe, B.A., Chen, F., Pan, H., Ramser, J., Lehrach, H., Reinhardt, R., McCombie, W.R., de la Bastide, M., Dedhia, N., Blöcker, H., Hornischer, K., Nordsiek, G., Agarwala, R., Aravind, L., Bailey, J.A., Bateman, A., Batzoglou, S., Birney, E., Bork, P., Brown, D.G., Burge, C.B., Cerutti, L., Chen, H.C., Church, D., Clamp, M., Copley, R.R., Doerks, T., Eddy, S.R., Eichler, E.E., Furey, T.S., Galagan, J., Gilbert, J.G., Harmon, C., Hayashizaki, Y., Haussler, D., Hermjakob, H., Hokamp, K., Jang, W., Johnson, L.S., Jones, T.A., Kasif, S., Kaspryzk, A., Kennedy, S., Kent, W.J., Kitts, P., Koonin, E.V., Korf, I., Kulp, D., Lancet, D., Lowe, T.M., McLysaght, A., Mikkelsen, T., Moran, J.V., Mulder, N., Pollara, V.J., Ponting, C.P., Schuler, G., Schultz, J., Slater, G., Smit, A.F., Stupka, E., Szustakowski, J., Thierry-Mieg, D., Thierry-Mieg, J., Wagner, L., Wallis, J., Wheeler, R., Williams, A., Wolf, Y.I., Wolfe, K.H., Yang, S.P., Yeh, R.F., Collins, F., Guyer, M.S., Peterson, J., Felsenfeld, A., Wetterstrand, K.A., Patrinos, A., Morgan, M.J., de Jong, P., Catanese, J.J., Osoegawa, K., Shizuya, H., Choi, S., and Chen, Y.J.; International Human Genome Sequencing Consortium: Initial sequencing and analysis of the human genome. Nature, 409, 860-921, 2001.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
LeVine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
Stange-Thomann, N.31
Stojanovic, N.32
Subramanian, A.33
Wyman, D.34
Rogers, J.35
Sulston, J.36
Ainscough, R.37
Beck, S.38
Bentley, D.39
Burton, J.40
Clee, C.41
Carter, N.42
Coulson, A.43
Deadman, R.44
Deloukas, P.45
Dunham, A.46
Dunham, I.47
Durbin, R.48
French, L.49
Grafham, D.50
Gregory, S.51
Hubbard, T.52
Humphray, S.53
Hunt, A.54
Jones, M.55
Lloyd, C.56
McMurray, A.57
Matthews, L.58
Mercer, S.59
Milne, S.60
Mullikin, J.C.61
Mungall, A.62
Plumb, R.63
Ross, M.64
Shownkeen, R.65
Sims, S.66
Waterston, R.H.67
Wilson, R.K.68
Hillier, L.W.69
McPherson, J.D.70
Marra, M.A.71
Mardis, E.R.72
Fulton, L.A.73
Chinwalla, A.T.74
Pepin, K.H.75
Gish, W.R.76
Chissoe, S.L.77
Wendl, M.C.78
Delehaunty, K.D.79
Miner, T.L.80
Delehaunty, A.81
Kramer, J.B.82
Cook, L.L.83
Fulton, R.S.84
Johnson, D.L.85
Minx, P.J.86
Clifton, S.W.87
Hawkins, T.88
Branscomb, E.89
Predki, P.90
Richardson, P.91
Wenning, S.92
Slezak, T.93
Doggett, N.94
Cheng, J.F.95
Olsen, A.96
Lucas, S.97
Elkin, C.98
Uberbacher, E.99
more..
-
2
-
-
0035895505
-
The sequence of the human genome
-
Venter, J.C., Adams, M.D., Myers, E.W., Li, P.W., Mural, R.J., Sutton, G.G., Smith, H.O., Yandell, M., Evans, C.A., Holt, R.A., Gocayne, J.D., Amanatides, P., Ballew, R.M., Huson, D.H., Wortman, J.R., Zhang, Q., Kodira, C.D., Zheng, X.H., Chen, L., Skupski, M., Subramanian, G., Thomas, P.D., Zhang, J., Gabor Miklos, G.L., Nelson, C., Broder, S., Clark, A.G., Nadeau, J., McKusick, V.A., Zinder, N., Levine, A.J., Roberts, R.J., Simon, M., Slayman, C., Hunkapiller, M., Bolanos, R., Delcher, A., Dew, I., Fasulo, D., Flanigan, M., Florea, L., Halpern, A., Hannenhalli, S., Kravitz, S., Levy, S., Mobarry, C., Reinert, K., Remington, K., Abu-Threideh, J., Beasley, E., Biddick, K., Bonazzi, V., Brandon, R., Cargill, M., Chandramouliswaran, I., Charlab, R., Chaturvedi, K., Deng, Z., Di Francesco, V., Dunn, P., Eilbeck, K., Evangelista, C., Gabrielian, A.E., Gan, W., Ge, W., Gong, F., Gu, Z., Guan, P., Heiman, T.J., Higgins, M.E., Ji, R.R., Ke, Z., Ketchum, K.A., Lai, Z., Lei, Y., Li, Z., Li, J., Liang, Y., Lin, X., Lu, F., Merkulov, G.V., Milshina, N., Moore, H.M., Naik, A.K., Narayan, V.A., Neelam, B., Nusskern, D., Rusch, D.B., Salzberg, S., Shao, W., Shue, B., Sun, J., Wang, Z., Wang, A., Wang, X., Wang, J., Wei, M., Wides, R., Xiao, C., Yan, C., Yao, A., Ye, J., Zhan, M., Zhang, W., Zhang, H., Zhao, Q., Zheng, L., Zhong, F., Zhong, W., Zhu, S., Zhao, S., Gilbert, D., Baumhueter, S., Spier, G., Carter, C., Cravchik, A., Woodage, T., Ali, F., An, H., Awe, A., Baldwin, D., Baden, H., Barnstead, M., Barrow, I., Beeson, K., Busam, D., Carver, A., Center, A., Cheng, M.L., Curry, L., Danaher, S., Davenport, L., Desilets, R., Dietz, S., Dodson, K., Doup, L., Ferriera, S., Garg, N., Gluecksmann, A., Hart, B., Haynes, J., Haynes, C., Heiner, C., Hladun, S., Hostin, D., Houck, J., Howland, T., Ibegwam, C., Johnson, J., Kalush, F., Kline, L., Koduru, S., Love, A., Mann, F., May, D., McCawley, S., McIntosh, T., McMullen, I., Moy, M., Moy, L., Murphy, B., Nelson, K., Pfannkoch, C., Pratts, E., Puri, V., Qureshi, H., Reardon, M., Rodriguez, R., Rogers, Y.H., Romblad, D., Ruhfel, B., Scott, R., Sitter, C., Smallwood, M., Stewart, E., Strong, R., Suh, E., Thomas, R., Tint, N.N., Tse, S., Vech, C., Wang, G., Wetter, J., Williams, S., Williams, M., Windsor, S., Winn-Deen, E., Wolfe, K., Zaveri, J., Zaveri, K., Abril, J.F., Guigó, R., Campbell, M.J., Sjolander, K.V., Karlak, B., Kejariwal, A., Mi, H., Lazareva, B., Hatton, T., Narechania, A., Diemer, K., Muruganujan, A., Guo, N., Sato, S., Bafna, V., Istrail, S., Lippert, R., Schwartz, R., Walenz, B., Yooseph, S., Allen, D., Basu, A., Baxendale, J., Blick, L., Caminha, M., Carnes-Stine, J., Caulk, P., Chiang, Y.H., Coyne, M., Dahlke, C., Mays, A., Dombroski, M., Donnelly, M., Ely, D., Esparham, S., Fosler, C., Gire, H., Glanowski, S., Glasser, K., Glodek, A., Gorokhov, M., Graham, K., Gropman, B., Harris, M., Heil, J., Henderson, S., Hoover, J., Jennings, D., Jordan, C., Jordan, J., Kasha, J., Kagan, L., Kraft, C., Levitsky, A., Lewis, M., Liu, X., Lopez, J., Ma, D., Majoros, W., McDaniel, J., Murphy, S., Newman, M., Nguyen, T., Nguyen, N., Nodell, M., Pan, S., Peck, J., Peterson, M., Rowe, W., Sanders, R., Scott, J., Simpson, M., Smith, T., Sprague, A., Stockwell, T., Turner, R., Venter, E., Wang, M., Wen, M., Wu, D., Wu, M., Xia, A., Zandieh, A., and Zhu, X.: The sequence of the human genome. Science, 291, 1304-1351, 2001.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
Gocayne, J.D.11
Amanatides, P.12
Ballew, R.M.13
Huson, D.H.14
Wortman, J.R.15
Zhang, Q.16
Kodira, C.D.17
Zheng, X.H.18
Chen, L.19
Skupski, M.20
Subramanian, G.21
Thomas, P.D.22
Zhang, J.23
Gabor Miklos, G.L.24
Nelson, C.25
Broder, S.26
Clark, A.G.27
Nadeau, J.28
McKusick, V.A.29
Zinder, N.30
Levine, A.J.31
Roberts, R.J.32
Simon, M.33
Slayman, C.34
Hunkapiller, M.35
Bolanos, R.36
Delcher, A.37
Dew, I.38
Fasulo, D.39
Flanigan, M.40
Florea, L.41
Halpern, A.42
Hannenhalli, S.43
Kravitz, S.44
Levy, S.45
Mobarry, C.46
Reinert, K.47
Remington, K.48
Abu-Threideh, J.49
Beasley, E.50
Biddick, K.51
Bonazzi, V.52
Brandon, R.53
Cargill, M.54
Chandramouliswaran, I.55
Charlab, R.56
Chaturvedi, K.57
Deng, Z.58
Di Francesco, V.59
Dunn, P.60
Eilbeck, K.61
Evangelista, C.62
Gabrielian, A.E.63
Gan, W.64
Ge, W.65
Gong, F.66
Gu, Z.67
Guan, P.68
Heiman, T.J.69
Higgins, M.E.70
Ji, R.R.71
Ke, Z.72
Ketchum, K.A.73
Lai, Z.74
Lei, Y.75
Li, Z.76
Li, J.77
Liang, Y.78
Lin, X.79
Lu, F.80
Merkulov, G.V.81
Milshina, N.82
Moore, H.M.83
Naik, A.K.84
Narayan, V.A.85
Neelam, B.86
Nusskern, D.87
Rusch, D.B.88
Salzberg, S.89
Shao, W.90
Shue, B.91
Sun, J.92
Wang, Z.93
Wang, A.94
Wang, X.95
Wang, J.96
Wei, M.97
Wides, R.98
Xiao, C.99
more..
-
3
-
-
33748948995
-
Contrasting genome-wide distribution of 8-hydroxyguanine and acrolein-modified adenine during oxidative stress-induced renal carcinogenesis
-
Akatsuka, S., Aung, T.T., Dutta, K.K., Jiang, L., Lee, W.H., Liu, Y.T., Onuki, J., Shirase, T., Yamasaki, K., Ochi, H., Naito, Y., Yoshikawa, T., Kasai, H., Tominaga, Y., Sakumi, K., Nakabeppu, Y., Kawai, Y., Uchida, K., Yamasaki, A., Tsuruyama, T., Yamada, Y., and Toyokuni, S.: Contrasting genome-wide distribution of 8-hydroxyguanine and acrolein-modified adenine during oxidative stress-induced renal carcinogenesis. Am. J. Pathol., 169, 1328-1342, 2006.
-
(2006)
Am. J. Pathol.
, vol.169
, pp. 1328-1342
-
-
Akatsuka, S.1
Aung, T.T.2
Dutta, K.K.3
Jiang, L.4
Lee, W.H.5
Liu, Y.T.6
Onuki, J.7
Shirase, T.8
Yamasaki, K.9
Ochi, H.10
Naito, Y.11
Yoshikawa, T.12
Kasai, H.13
Tominaga, Y.14
Sakumi, K.15
Nakabeppu, Y.16
Kawai, Y.17
Uchida, K.18
Yamasaki, A.19
Tsuruyama, T.20
Yamada, Y.21
Toyokuni, S.22
more..
-
4
-
-
0037379911
-
Identification of benzo(a)pyrene diol epoxide-binding DNA fragments using DNA immunoprecipitation technique
-
Liang, Z., Lippman, S.M., Kawabe, A., Shimada, Y., and Xu, X.C.: Identification of benzo(a)pyrene diol epoxide-binding DNA fragments using DNA immunoprecipitation technique. Cancer Res., 63, 1470-1474, 2003.
-
(2003)
Cancer Res.
, vol.63
, pp. 1470-1474
-
-
Liang, Z.1
Lippman, S.M.2
Kawabe, A.3
Shimada, Y.4
Xu, X.C.5
-
5
-
-
17344371740
-
High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays
-
Pinkel, D., Segraves, R., Sudar, D., Clark, S., Poole, I., Kowbel, D., Collins, C., Kuo, W.L., Chen, C., Zhai, Y., Dairkee, S.H., Ljung, B.M., Gray, J.W., and Albertson, D.G.: High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nat. Genet., 20, 207-211, 1998.
-
(1998)
Nat. Genet.
, vol.20
, pp. 207-211
-
-
Pinkel, D.1
Segraves, R.2
Sudar, D.3
Clark, S.4
Poole, I.5
Kowbel, D.6
Collins, C.7
Kuo, W.L.8
Chen, C.9
Zhai, Y.10
Dairkee, S.H.11
Ljung, B.M.12
Gray, J.W.13
Albertson, D.G.14
-
6
-
-
33846467191
-
Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
-
Gardina, P.J., Clark, T.A., Shimada, B., Staples, M.K., Yang, Q., Veitch, J., Schweitzer, A., Awad, T., Sugnet, C., Dee, S., Davies, C., Williams, A., and Turpaz, Y.: Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array. BMC Genomics, 7, 325, 2006.
-
(2006)
BMC Genomics
, vol.7
, pp. 325
-
-
Gardina, P.J.1
Clark, T.A.2
Shimada, B.3
Staples, M.K.4
Yang, Q.5
Veitch, J.6
Schweitzer, A.7
Awad, T.8
Sugnet, C.9
Dee, S.10
Davies, C.11
Williams, A.12
Turpaz, Y.13
-
7
-
-
33747887038
-
Analyzing micro-RNA expression using microarrays
-
Davison, T.S., Johnson, C.D., and Andruss, B.F.: Analyzing micro-RNA expression using microarrays. Methods Enzymol., 411, 14-34, 2006.
-
(2006)
Methods Enzymol.
, vol.411
, pp. 14-34
-
-
Davison, T.S.1
Johnson, C.D.2
Andruss, B.F.3
-
8
-
-
23744484912
-
Profiling DNA methylation patterns using genomic tiling microarrays
-
Lippman, Z., Gendrel, A.V., Colot, V., and Martienssen, R.: Profiling DNA methylation patterns using genomic tiling microarrays. Nat. Methods, 2, 219-224, 2005.
-
(2005)
Nat. Methods
, vol.2
, pp. 219-224
-
-
Lippman, Z.1
Gendrel, A.V.2
Colot, V.3
Martienssen, R.4
-
9
-
-
10744221619
-
Large-scale genotyping of complex DNA
-
Kennedy, G.C., Matsuzaki, H., Dong, S., Liu, W.M., Huang, J., Liu, G., Su, X., Cao, M., Chen, W., Zhang, J., Liu, W., Yang, G., Di, X., Ryder, T., He, Z., Surti, U., Phillips, M.S., Boyce-Jacino, M.T., Fodor, S.P., and Jones, K.W.: Large-scale genotyping of complex DNA. Nat. Biotechnol., 21, 1233-1237, 2003.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 1233-1237
-
-
Kennedy, G.C.1
Matsuzaki, H.2
Dong, S.3
Liu, W.M.4
Huang, J.5
Liu, G.6
Su, X.7
Cao, M.8
Chen, W.9
Zhang, J.10
Liu, W.11
Yang, G.12
Di, X.13
Ryder, T.14
He, Z.15
Surti, U.16
Phillips, M.S.17
Boyce-Jacino, M.T.18
Fodor, S.P.19
Jones, K.W.20
more..
-
10
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M., Shalon, D., Davis, R.W., and Brown, P.O.: Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467-470, 1995.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
11
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart, D.J., Dong, H., Byrne, M.C., Follettie, M.T., Gallo, M.V., Chee, M.S., Mittmann, M., Wang, C., Kobayashi, M., Horton, H., and Brown, E.L.: Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol., 14, 1675-1680, 1996.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.L.11
-
12
-
-
30744475461
-
Allelic imbalance analysis of oral tongue squamous cell carcinoma by high-density single nucleotide polymorphism arrays using whole-genome amplified DNA
-
Zhou, X., Temam, S., Chen, Z., Ye, H., Mao, L., and Wong, D.T.: Allelic imbalance analysis of oral tongue squamous cell carcinoma by high-density single nucleotide polymorphism arrays using whole-genome amplified DNA. Hum. Genet., 118, 504-507, 2005.
-
(2005)
Hum. Genet.
, vol.118
, pp. 504-507
-
-
Zhou, X.1
Temam, S.2
Chen, Z.3
Ye, H.4
Mao, L.5
Wong, D.T.6
-
13
-
-
33751260934
-
TMPRSS2 fusions with oncogenic ETS factors in prostate cancer involve unbalanced genomic rearrangements and are associated with HDAC1 and epigenetic reprogramming
-
Iljin, K., Wolf, M., Edgren, H., Gupta, S., Kilpinen, S., Skotheim, R.I., Peltola, M., Smit, F., Verhaegh, G., Schalken, J., Nees, M., and Kallioniemi, O.: TMPRSS2 fusions with oncogenic ETS factors in prostate cancer involve unbalanced genomic rearrangements and are associated with HDAC1 and epigenetic reprogramming. Cancer Res., 66, 10242-10246, 2006.
-
(2006)
Cancer Res.
, vol.66
, pp. 10242-10246
-
-
Iljin, K.1
Wolf, M.2
Edgren, H.3
Gupta, S.4
Kilpinen, S.5
Skotheim, R.I.6
Peltola, M.7
Smit, F.8
Verhaegh, G.9
Schalken, J.10
Nees, M.11
Kallioniemi, O.12
-
14
-
-
23044514626
-
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
-
Weber, M., Davies, J.J., Wittig, D., Oakeley, E.J., Haase, M., Lam, W.L., and Schübeler, D.: Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat. Genet., 37, 853-862, 2005.
-
(2005)
Nat. Genet.
, vol.37
, pp. 853-862
-
-
Weber, M.1
Davies, J.J.2
Wittig, D.3
Oakeley, E.J.4
Haase, M.5
Lam, W.L.6
Schübeler, D.7
-
15
-
-
0036024955
-
Identification of unknown target genes of human transcription factors using chromatin immunoprecipitation
-
Weinmann, A.S. and Farnham, P.J.: Identification of unknown target genes of human transcription factors using chromatin immunoprecipitation. Methods, 26, 37-47, 2002.
-
(2002)
Methods
, vol.26
, pp. 37-47
-
-
Weinmann, A.S.1
Farnham, P.J.2
-
16
-
-
1042276981
-
Analysis of genome-wide histone acetylation state and enzyme binding using DNA microarrays
-
Robyr, D., Kurdistani, S.K., and Grunstein, M.: Analysis of genome-wide histone acetylation state and enzyme binding using DNA microarrays. Methods Enzymol., 376, 289-304, 2004.
-
(2004)
Methods Enzymol.
, vol.376
, pp. 289-304
-
-
Robyr, D.1
Kurdistani, S.K.2
Grunstein, M.3
-
17
-
-
1042288539
-
Use of chromatin immunoprecipitation assays in genome-wide location analysis of mammalian transcription factors
-
Ren, B. and Dynlacht, B.D.: Use of chromatin immunoprecipitation assays in genome-wide location analysis of mammalian transcription factors. Methods Enzymol., 376, 304-315, 2004.
-
(2004)
Methods Enzymol.
, vol.376
, pp. 304-315
-
-
Ren, B.1
Dynlacht, B.D.2
-
18
-
-
0031080378
-
Analysis of chromatin structure by in vivo formaldehyde cross-linking
-
Orlando, V., Strutt, H., and Paro, R.: Analysis of chromatin structure by in vivo formaldehyde cross-linking. Methods, 11, 205-214, 1997.
-
(1997)
Methods
, vol.11
, pp. 205-214
-
-
Orlando, V.1
Strutt, H.2
Paro, R.3
-
19
-
-
0036024957
-
Characterizing transcription factor binding sites using formaldehyde crosslinking and immunoprecipitation
-
Wells, J. and Farnham, P.J.: Characterizing transcription factor binding sites using formaldehyde crosslinking and immunoprecipitation. Methods, 26, 48-56, 2002.
-
(2002)
Methods
, vol.26
, pp. 48-56
-
-
Wells, J.1
Farnham, P.J.2
-
20
-
-
33646882068
-
Polycomb complexes repress developmental regulators in murine embryonic stem cells
-
Boyer, L.A., Plath, K., Zeitlinger, J., Brambrink, T., Medeiros, L.A., Lee, T.I., Levine, S.S., Wernig, M., Tajonar, A., Ray, M.K., Bell, G.W., Otte, A.P., Vidal, M., Gifford, D.K., Young, R.A., and Jaenisch, R.: Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature, 441, 349-353, 2006.
-
(2006)
Nature
, vol.441
, pp. 349-353
-
-
Boyer, L.A.1
Plath, K.2
Zeitlinger, J.3
Brambrink, T.4
Medeiros, L.A.5
Lee, T.I.6
Levine, S.S.7
Wernig, M.8
Tajonar, A.9
Ray, M.K.10
Bell, G.W.11
Otte, A.P.12
Vidal, M.13
Gifford, D.K.14
Young, R.A.15
Jaenisch, R.16
-
21
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B.E., Mikkelsen, T.S., Xie, X., Kamal, M., Huebert, D.J., Cuff, J., Fry, B., Meissner, A., Wernig, M., Plath, K., Jaenisch, R., Wagschal, A., Feil, R., Schreiber, S.L., and Lander, E.S.: A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell, 125, 315-326, 2006.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
Jaenisch, R.11
Wagschal, A.12
Feil, R.13
Schreiber, S.L.14
Lander, E.S.15
-
22
-
-
33646748283
-
A systems approach to mapping DNA damage response pathways
-
Workman, C.T., Mak, H.C., McCuine, S., Tagne, J.B., Agarwal, M., Ozier, O., Begley, T.J., Samson, L.D., and Ideker, T.: A systems approach to mapping DNA damage response pathways. Science, 312, 1054-1059, 2006.
-
(2006)
Science
, vol.312
, pp. 1054-1059
-
-
Workman, C.T.1
Mak, H.C.2
McCuine, S.3
Tagne, J.B.4
Agarwal, M.5
Ozier, O.6
Begley, T.J.7
Samson, L.D.8
Ideker, T.9
-
23
-
-
33646912186
-
A role for TFIIIC transcription factor complex in genome organization
-
Noma, K., Cam, H.P., Maraia, R.J., and Grewal, S.I.: A role for TFIIIC transcription factor complex in genome organization. Cell, 125, 859-872, 2006.
-
(2006)
Cell
, vol.125
, pp. 859-872
-
-
Noma, K.1
Cam, H.P.2
Maraia, R.J.3
Grewal, S.I.4
-
24
-
-
34249989400
-
Spreading of mammalian DNA-damage response factors studied by ChIP-chip at damaged telomeres
-
Meier, A., Fiegler, H., Muñoz, P., Ellis, P., Rigler, D., Langford, C., Blasco, M.A., Carter, N., and Jackson, S.P.: Spreading of mammalian DNA-damage response factors studied by ChIP-chip at damaged telomeres. EMBO J., 26, 2707-2718, 2007.
-
(2007)
EMBO J.
, vol.26
, pp. 2707-2718
-
-
Meier, A.1
Fiegler, H.2
Muñoz, P.3
Ellis, P.4
Rigler, D.5
Langford, C.6
Blasco, M.A.7
Carter, N.8
Jackson, S.P.9
-
25
-
-
34249307315
-
Nuclear organization of the genome and the potential for gene regulation
-
Fraser, P. and Bickmore, W.: Nuclear organization of the genome and the potential for gene regulation. Nature, 447, 413-417, 2007.
-
(2007)
Nature
, vol.447
, pp. 413-417
-
-
Fraser, P.1
Bickmore, W.2
-
26
-
-
0032559794
-
Replicon clusters are stable units of chromosome structure: Evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells
-
Jackson, D.A. and Pombo, A.: Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells. J. Cell Biol., 140, 1285-1295, 1998.
-
(1998)
J. Cell Biol.
, vol.140
, pp. 1285-1295
-
-
Jackson, D.A.1
Pombo, A.2
-
27
-
-
0033369515
-
The spatial position and replication timing of chromosomal domains are both established in early G1 phase
-
Dimitrova, D.S. and Gilbert, D.M.: The spatial position and replication timing of chromosomal domains are both established in early G1 phase. Mol. Cell, 4, 983-993, 1999.
-
(1999)
Mol. Cell
, vol.4
, pp. 983-993
-
-
Dimitrova, D.S.1
Gilbert, D.M.2
-
28
-
-
0442329154
-
Multicolor chromosome painting in diagnostic and research applications
-
Langer, S., Kraus, J., Jentsch, I., and Speicher, M.R.: Multicolor chromosome painting in diagnostic and research applications. Chromosome Res., 12, 15-23, 2004.
-
(2004)
Chromosome Res.
, vol.12
, pp. 15-23
-
-
Langer, S.1
Kraus, J.2
Jentsch, I.3
Speicher, M.R.4
-
29
-
-
21844444077
-
Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes
-
Bolzer, A., Kreth, G., Solovei, I., Koehler, D., Saracoglu, K., Fauth, C., Müller, S., Eils, R., Cremer, C., Speicher, M.R., and Cremer, T.: Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes. PLos Biol., 3, e157, 2005.
-
(2005)
PLos Biol.
, vol.3
-
-
Bolzer, A.1
Kreth, G.2
Solovei, I.3
Koehler, D.4
Saracoglu, K.5
Fauth, C.6
Müller, S.7
Eils, R.8
Cremer, C.9
Speicher, M.R.10
Cremer, T.11
-
30
-
-
33947167388
-
Histone H2AX and Fanconi anemia FANCD2 function in the same pathway to maintain chromosome stability
-
Bogliolo, M., Lyakhovich, A., Callén, E., Castellà, M., Cappelli, E., Ramírez, M.J., Creus, A., Marcos, R., Kalb, R., Neveling, K., Schindler, D., and Surrallés, J.: Histone H2AX and Fanconi anemia FANCD2 function in the same pathway to maintain chromosome stability. EMBO J., 26, 1340-1351, 2007.
-
(2007)
EMBO J.
, vol.26
, pp. 1340-1351
-
-
Bogliolo, M.1
Lyakhovich, A.2
Callén, E.3
Castellà, M.4
Cappelli, E.5
Ramírez, M.J.6
Creus, A.7
Marcos, R.8
Kalb, R.9
Neveling, K.10
Schindler, D.11
Surrallés, J.12
-
31
-
-
22444442369
-
-
Cold Spring Harbor Laboratory Press, New York
-
Goldman, R.D., Swedlow, J.R., and Spector, D.L.: Live Cell Imaging: A Laboratory Manual, Cold Spring Harbor Laboratory Press, New York, 2005.
-
(2005)
Live Cell Imaging: A Laboratory Manual
-
-
Goldman, R.D.1
Swedlow, J.R.2
Spector, D.L.3
-
32
-
-
33745173497
-
A genome-wide distribution of 8-oxoguanine correlates with the preferred regions for recombination and single nucleotide polymorphism in the human genome
-
Ohno, M., Miura, T., Furuichi, M., Tominaga, Y., Tsuchimoto, D., Sakumi, K., and Nakabeppu, Y.: A genome-wide distribution of 8-oxoguanine correlates with the preferred regions for recombination and single nucleotide polymorphism in the human genome. Genome Res., 16, 567-575, 2006.
-
(2006)
Genome Res.
, vol.16
, pp. 567-575
-
-
Ohno, M.1
Miura, T.2
Furuichi, M.3
Tominaga, Y.4
Tsuchimoto, D.5
Sakumi, K.6
Nakabeppu, Y.7
-
33
-
-
0036679004
-
Clusters of transcription-coupled repair in the human genome
-
Surrallés, J., Ramírez, M.J., Marcos, R., Natarajan, A.T., and Mullenders, L.H.: Clusters of transcription-coupled repair in the human genome. Proc. Natl. Acad. Sci. U.S.A., 99, 10571-10574, 2002.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 10571-10574
-
-
Surrallés, J.1
Ramírez, M.J.2
Marcos, R.3
Natarajan, A.T.4
Mullenders, L.H.5
-
34
-
-
0035316574
-
Chromosome territories, nuclear architecture and gene regulation in mammalian cells
-
Cremer, T. and Cremer, C.: Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat. Rev. Genet., 2, 292-301, 2001.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 292-301
-
-
Cremer, T.1
Cremer, C.2
-
35
-
-
0037007044
-
Evolutionary conservation of chromosome territory arrangements in cell nuclei from higher primates
-
Tanabe, H., Müller, S., Neusser, M., von Hase, J., Calcagno, E., Cremer, M., Solovei, I., Cremer, C., and Cremer, T.: Evolutionary conservation of chromosome territory arrangements in cell nuclei from higher primates. Proc. Natl. Acad. Sci. U.S.A., 99, 4424-4429, 2002.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 4424-4429
-
-
Tanabe, H.1
Müller, S.2
Neusser, M.3
Von Hase, J.4
Calcagno, E.5
Cremer, M.6
Solovei, I.7
Cremer, C.8
Cremer, T.9
-
36
-
-
4844223232
-
Tissue-specific spatial organization of genomes
-
Parada, L.A., McQueen, P.G., and Misteli, T.: Tissue-specific spatial organization of genomes. Genome Biol., 5, R44, 2004.
-
(2004)
Genome Biol.
, vol.5
-
-
Parada, L.A.1
McQueen, P.G.2
Misteli, T.3
|