Overexpression of the polynucleotide phosphorylase gene (pnp) of Streptomyces antibioticus affects mRNA stability and poly(A) tail length but not ppGpp levels

Microbiology

Volumn 149, Issue 8, 2003, Pages 2173-2182

  Bralley, Patricia ^a   Jones, George H ^a  

^a EMORY UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DACTINOMYCIN; MESSENGER RNA; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; THIOSTREPTON;

BACTERIAL GROWTH; BACTERIAL STRAIN; CHROMOSOME ANALYSIS; CONTROLLED STUDY; DNA FLANKING REGION; ENZYME ACTIVITY; ESCHERICHIA COLI; GENE OVEREXPRESSION; GROWTH RATE; HALF LIFE TIME; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; PROMOTER REGION; REVIEW; RNA STABILITY; STREPTOMYCES ANTIBIOTICUS;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; PROKARYOTA; PTEROGYNE NITENS; STREPTOMYCES; STREPTOMYCES ANTIBIOTICUS; STREPTOMYCINEAE; UNCULTURED ACTINOMYCETE;

EID: 0041923884     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.26334-0     Document Type: Review

References (47)

1. Adamis, T. & Champness, W. (1992). Genetic analysis of absB, a Streptomyces coelicolor locus involved in global antibiotic regulation. J Bacteriol 174, 4622-4628.
2. Bralley, P. & Jones, G. H. (2001). Poly(A) polymerase activity and RNA polyadenylation in Streptomyces coelicolor A3(2). Mol Microbiol 40, 1155-1164.
3. Bralley, P. & Jones, G. H. (2002). cDNA cloning confirms the polyadenylation of RNA decay intermediates in Streptomyces coelicolor. Microbiology 148, 1421-1425.
4. Cao, G. J. & Sarkar, N. (1992). Identification of the gene for an Escherichia coli poly(A) polymerase. Proc Natl Acad Sci U S A 89, 10380-10384.
5. Cashel, M., Gentry, D. R., Hernandez, V. J. & Vinella, D. (1996). The stringent response. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 1458-1496. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
6. Chakraburtty, R. & Bibb, M. J. (1997). The ppGpp synthetase gene (relA) of Streptomyces coelicolor A3(2) plays a conditional role in antibiotic production and morphological differentiation. J Bacteriol 179, 5854-5864.
7. Chakraburtty, R., White, J., Takano, E. & Bibb, M. J. (1996). Cloning and characterization and disruption of a (p)ppGpp synthetase gene (relA) of Streptomyces coelicolor A3(2). Mol Microbiol 19, 357-368.
8. Coburn, G. A. & Mackie, G. A. (1999). Degradation of mRNA in Escherichia coli: an old problem with some new twists. Prog Nucleic Acids Res Mol Biol 62, 55-105.
9. Combes, P., Till, R., Bee, S. & Smith, M. C. M. (2002). The Streptomyces genome contains multiple pseudo-attB sites for the φC-31-encoded site-specific recombination system. J Bacteriol 184, 5746-5752.
10. Deutscher, M. & Reuven, N. B. (1991). Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis. Proc Natl Acad Sci U S A 88, 3277-3280.
11. Farr, G. A., Oussenko, I. A. & Bechhofer, D. H. (1999). Protection against 3′-to-5′-RNA decay in Bacillus subtilis. J Bacteriol 181, 7323-7330.
12. Gallo, M. & Katz, E. (1972). Regulation of secondary metabolite biosynthesis: catabolite repression of phenoxazinone synthase and actinomycin production by glucose. J Bacteriol 109, 659-667.
13. Ghosh, S. & Deutscher, M. (1999). Oligoribonuclease is an essential component of the mRNA degradation pathway. Proc Natl Acad Sci U S A 96, 4372-4377.
14. Godefroy-Colburn, T. & Grunberg-Manago, M. (1972). Polynucleotide phosphorylase. In The Enzymes vol. 7, pp. 533-574. Edited by H. D. Boyer. New York: Academic Press.
15. Grunberg-Manago, M. (1999). Messenger RNA stability and its role in control of gene expression in bacteria and phages. Annu Rev Genet 33, 193-227.
16. Grunberg-Manago, M. & Ochoa, S. (1955). Enzymatic synthesis and breakdown of polynucleotides: polynucleotide phosphorylase. J Am Chem Soc 77, 3165-3166.
17. Hagege, J. M. & Cohen, S. N. (1997). A developmentally regulated Streptomyces endoribonuclease resembles ribonuclease of Escherichia coli. Mol Microbiol 25, 1077-1090.
18. Herskovitz, M. A. & Bechhofer, D. H. (2000). Endoribonuclease RNase III is essential in Bacillus subtilis. Mol Microbiol 38, 1027-1033.
19. Hesketh, A., Sun, J. & Bibb, M. J. (2001). Induction of ppGpp synthesis in Streptomyces coelicolor A3(2) grown under conditions of nutritional sufficiency elicits actII-orf4 transcription and actinorhodin biosynthesis. Mol Microbiol 39, 136-141.
20. Holmes, D. J., Caso, J. & Thompson, C. (1993). Autogenous transcriptional activation of a thiostrepton-induced gene in Streptomyces lividans. EMBO J 12, 3183-3191.
21. Hoyt, S. & Jones, G. H. (1999). relA is required for actinomycin production in Streptomyces antibioticus. J Bacteriol 181, 3824-3829.
22. Hsieh, C.-J. & Jones, G. H. (1995). Nucleotide sequence, transcriptional analysis and glucose regulation of the phenoxazinone synthase gene from Streptomyces, antibioticus. J Bacteriol 177, 5740-5747.
23. Huang, J., Lih, C.-J., Pan, K.-H. & Cohen, S. N. (2001). Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in Streptomyces coelicolor using DNA microarrays. Genes Dev 15, 3183-3192.
24. Jarrige, A.-C., Mathy, N. & Portier, C. (2001). PNPase autocontrols its expression by degrading a double-stranded structure in the pnp mRNA leader. EMBO J 20, 6845-6855.
25. Jarrige, A.-C., Bréchemier-Baey, D., Mathy, N., Duché, O. & Portier, C. (2002). Mutational analysis of polynucleotide phosphorylase from Escherichia coli. J Mol Biol 312, 397-409.
26. Jones, G. H. (1994a). Purification and properties of ATP:GTP 3′-pyrophosphotransferase (guanosine pentaphosphate synthetase) from Streptomyces antibioticus. J Bacteriol 176, 1475-1481.
27. Jones, G. H. (1994b). Activation of ATP-GTP 3′-pyrophosphotransferase (guanosine pentaphosphate synthetase) in Streptomyces antibioticus. J Bacteriol 176, 1482-1487.
28. Jones, G. H. (2000). Actinomycin synthesis persists in a strain of Streptomyces antibioticus lacking phenoxazinone synthase. Antimicrob Agents Chemother 44, 1322-1327.
29. Jones, G. H. & Bibb, M. J. (1996). Guanosine pentaphosphate synthetase from Streptomyces antibioticus is also a polynucleotide phosphorylase. J Bacteriol 178, 4281-4288.
30. Jones, G. H., Paget, M. S. B., Chamberlin, L. & Buttner, M. J. (1997). Sigma-E is required for the production of the antibiotic actinomycin in Streptomyces antibioticus. Mol Microbiol 23, 169-178.
31. Kieser, Y., Bibb, M. J., Buttner, M. J., Chater, K. F. & Hopwood, D. A. (2000). Practical Streptomyces Genetics. Norwich, UK: John Innes Foundation.
32. Lisitsky, I., Klaff, P. & Schuster, G. (1996). Addition of destabilizing poly(A) rich sequences to endonuclease cleavage sites during the degradation of chloroplast RNA. Proc Natl Acad Sci U S A 93, 13398-13403.
33. Littauer, U. Z. & Soreq, H. (1982). Polynucleotide phosphorylase. In The Enzymes vol. 15, pp. 517-553. Edited by H. D. Boyer. New York: Academic Press.
34. Luttinger, A., Hahn, J. & Dubnau, D. (1996). Polynucleotide phosphorylase is necessary for competence development in Bacillus subtilis. Mol Microbiol 19, 343-356.
35. Mohanty, B. K. & Kushner, S. R. (2000a). Polynucleotide phosphorylase, RNase II and RNase E play different roles in the in vivo modulation of polyadenylation in Escherichia coli. Mol Microbiol 36, 982-994.
36. Mohanty, B. K. & Kushner, S. R. (2000b). Polynucleotide phosphorylase functions both as a 3′-5′ exonuclease and a poly(A) polymerase in Escherichia coli. Proc Natl Acad Sci U S A 97, 11966-11971.
37. Ohnishi, Y., Nishiyama, Y., Sato, R., Kameyama, S. & Horinouchi, S. (2000). An oligoribonuclease gene in Streptomyces griseus. J Bacteriol 182, 4647-4653.
38. Price, B., Adamis, T. & Champness, W. (1999). A Streptomyces coelicolor antibiotic regulatory gene, absB, encodes an RNase III homolog. J Bacteriol 181, 6142-6151.
39. Rauhut, R. & Klug, G. (1999). mRNA degradation in bacteria. FEMS Microbiol Rev 23, 353-370.
40. Regnier, P. & Arraiano, C. M. (2000). Degradation of mRNA in bacteria: emergence of ubiquitous features. Bioessays 22, 235-244.
41. Rott, R., Zipor, G., Portnoy, V., Liveanu, V. & Schuster, G. (2003). RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from E. coli. J Biol Chem 278, 15771-15777.
42. Sun, J., Kelemen, G. H., Fernandez-Abalos, J. M. & Bibb, M. J. (1999). Green fluorescent protein as a reporter for spatial and temporal gene expression in Streptomyces coelicolor A3(2). Microbiology 145, 2221-2227.
43. Symmons, M., Jones, G. H. & Luisi, B. (2000). A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity and regulation. Structure 8, 1215-1226.
44. Takano, E., Gramajo, H. C., Strauch, E., Andres, N., White, J. & Bibb, M. J. (1992). Transcriptional regulation of the redD transcriptional activator gene accounts for growth-phase dependent production of the antibiotic undecylprodigiosin in Streptomyces coelicolor A3(2). Mol Microbiol 6, 2797-2804.
45. Vohradsky, J., Li, X. M., Dale, G., Folcher, M., Nguyen, L., Viollier, P. H. & Thompson, C. J. (2000). Developmental control of stress stimulons in Streptomyces coelicolor revealed by statistical analysis of global gene expression patterns. J Bacteriol 182, 4979-4986.
46. Yehudai-Resheff, S., Hirsh, M. & Schuster, G. (2001). Polynucleotide phosphorylase functions as both an exonuclease and a poly(A) polymerase in spinach chloroplasts. Mol Cell Biol 21, 5408-5416.
47. Zuo, Y. & Deutscher, M. (2001). Exuribonuclease superfamilies: structural analysis and phylogenetic distribution. Nucleic Acids Res 29, 1017-1026.