메뉴 건너뛰기




Volumn 4, Issue 2, 2010, Pages 263-273

Metagenomic analyses of the dominant bacterial community in the Fildes Peninsula, King George Island (South Shetland Islands)

Author keywords

Antarctica; Bacterial diversity; DGGE fingerprinting; Fildes Peninsula; Sediment; Soil

Indexed keywords

BACTERIUM; ELECTROKINESIS; GENETIC ANALYSIS; MICROBIAL COMMUNITY; POLYMERASE CHAIN REACTION; SAMPLING; SPECIES DIVERSITY;

EID: 77956439410     PISSN: 18739652     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.polar.2010.05.010     Document Type: Article
Times cited : (33)

References (44)
  • 2
    • 39549107332 scopus 로고    scopus 로고
    • Relation between soil classification and bacterial diversity in soils of the Ross Sea region, Antarctica
    • Aislabie J.M., Jordan S., Barker G.M. Relation between soil classification and bacterial diversity in soils of the Ross Sea region, Antarctica. Geoderma 2008, 144:9-20.
    • (2008) Geoderma , vol.144 , pp. 9-20
    • Aislabie, J.M.1    Jordan, S.2    Barker, G.M.3
  • 4
    • 0036202170 scopus 로고    scopus 로고
    • Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants
    • Boon N., De Windt W., Verstraete W., Top E.M. Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants. FEMS Microbiology Ecology 2002, 39:101-112.
    • (2002) FEMS Microbiology Ecology , vol.39 , pp. 101-112
    • Boon, N.1    De Windt, W.2    Verstraete, W.3    Top, E.M.4
  • 5
    • 0038369933 scopus 로고    scopus 로고
    • Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment
    • Bowman J.P., McCuaig R.D. Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment. Applied and Environmental Microbiology 2003, 69:2463-2483.
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 2463-2483
    • Bowman, J.P.1    McCuaig, R.D.2
  • 6
    • 0034554802 scopus 로고    scopus 로고
    • Diversity and community structure within anoxic sediment from marine salinity meromitic lakes and a coastal meromitic marine basin, Vestfold Hills, Eastern Antarctica
    • Bowman J.P., Rea S.M., McCammon S.A., McMeekin T.A. Diversity and community structure within anoxic sediment from marine salinity meromitic lakes and a coastal meromitic marine basin, Vestfold Hills, Eastern Antarctica. Environmental Microbiology 2000, 2:227-237.
    • (2000) Environmental Microbiology , vol.2 , pp. 227-237
    • Bowman, J.P.1    Rea, S.M.2    McCammon, S.A.3    McMeekin, T.A.4
  • 7
    • 0035257574 scopus 로고    scopus 로고
    • 16S rDNA diversity of cultured and uncultured prokaryotes of mat sample from Lake Fryxell, McMurdo Dry Valleys, Antarctica
    • Brambilla E., Hippe H., Hagelstein A., Tindall B.J., Stackebrandt E. 16S rDNA diversity of cultured and uncultured prokaryotes of mat sample from Lake Fryxell, McMurdo Dry Valleys, Antarctica. Extremophiles 2001, 5:23-33.
    • (2001) Extremophiles , vol.5 , pp. 23-33
    • Brambilla, E.1    Hippe, H.2    Hagelstein, A.3    Tindall, B.J.4    Stackebrandt, E.5
  • 8
    • 67349272096 scopus 로고    scopus 로고
    • DGGE fingerprinting of bacteria in soils from eight ecologically different sites around Casey Station, Antarctica
    • Chong C.W., Annie Tan G.Y., Wong R.C.S., Riddle M.J., Tan I.K.P. DGGE fingerprinting of bacteria in soils from eight ecologically different sites around Casey Station, Antarctica. Polar Biology 2009, 32:853-860.
    • (2009) Polar Biology , vol.32 , pp. 853-860
    • Chong, C.W.1    Annie Tan, G.Y.2    Wong, R.C.S.3    Riddle, M.J.4    Tan, I.K.P.5
  • 9
    • 70350604346 scopus 로고    scopus 로고
    • Environmental influences on bacterial diversity of soils on Signy Island, maritime Antarctic
    • Chong C.W., Dunn M.J., Convey P., Annie Tan G.Y., Wong R.C.S., Tan I.K.P. Environmental influences on bacterial diversity of soils on Signy Island, maritime Antarctic. Polar Biology 2009, 32:1571-1582.
    • (2009) Polar Biology , vol.32 , pp. 1571-1582
    • Chong, C.W.1    Dunn, M.J.2    Convey, P.3    Annie Tan, G.Y.4    Wong, R.C.S.5    Tan, I.K.P.6
  • 11
    • 59649107254 scopus 로고    scopus 로고
    • Fumarole - supported islands of biodiversity within a hyperarid, high-elevation landscape on Socompa Volcano, Puna de Atacama, Andes
    • Costello E.K., Halloy S.R.P., Reed S.C., Sowell P., Schmidt S.K. Fumarole - supported islands of biodiversity within a hyperarid, high-elevation landscape on Socompa Volcano, Puna de Atacama, Andes. Applied and Environmental Microbiology 2009, 75:735-747.
    • (2009) Applied and Environmental Microbiology , vol.75 , pp. 735-747
    • Costello, E.K.1    Halloy, S.R.P.2    Reed, S.C.3    Sowell, P.4    Schmidt, S.K.5
  • 12
    • 0032145986 scopus 로고    scopus 로고
    • Simple and rapid method for direct extraction of microbial DNA from soil for PCR
    • Cullen D.W., Hirsch P.R. Simple and rapid method for direct extraction of microbial DNA from soil for PCR. Soil Biology and Biochemistry 1998, 30:983-993.
    • (1998) Soil Biology and Biochemistry , vol.30 , pp. 983-993
    • Cullen, D.W.1    Hirsch, P.R.2
  • 13
    • 4644301880 scopus 로고    scopus 로고
    • Rapid estimation of numbers of fecal bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes
    • Dick L.K., Field K.G. Rapid estimation of numbers of fecal bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes. Applied and Environmental Microbiology 2004, 70:5695-5697.
    • (2004) Applied and Environmental Microbiology , vol.70 , pp. 5695-5697
    • Dick, L.K.1    Field, K.G.2
  • 14
    • 0038342846 scopus 로고    scopus 로고
    • Microbial composition and structure of a rotating biological contactor biofilm treating ammonium-rich wastewater without organic carbon
    • Egli K., Bosshard F., Werlen C., Lais P., Siegrist H., Zehnder A.J., van der Meer J.R. Microbial composition and structure of a rotating biological contactor biofilm treating ammonium-rich wastewater without organic carbon. Microbial Ecology 2003, 45:419-432.
    • (2003) Microbial Ecology , vol.45 , pp. 419-432
    • Egli, K.1    Bosshard, F.2    Werlen, C.3    Lais, P.4    Siegrist, H.5    Zehnder, A.J.6    van der Meer, J.R.7
  • 16
    • 0032418879 scopus 로고    scopus 로고
    • Freshwater protozoa: biodiversity and ecological function
    • Findlay B.J. Freshwater protozoa: biodiversity and ecological function. Biodiversity and Conservation 1998, 7:1163-1186.
    • (1998) Biodiversity and Conservation , vol.7 , pp. 1163-1186
    • Findlay, B.J.1
  • 17
    • 0037052531 scopus 로고    scopus 로고
    • Global dispersal of free-living microbial eukaryote species
    • Finlay B.J. Global dispersal of free-living microbial eukaryote species. Science 2002, 296:1061-11063.
    • (2002) Science , vol.296 , pp. 1061-11063
    • Finlay, B.J.1
  • 18
    • 34247882011 scopus 로고    scopus 로고
    • Interactions and competition within the microbial community of the human clone: links between diet and health
    • Flint H.J., Duncan S.H., Scott K.P., Louis P. Interactions and competition within the microbial community of the human clone: links between diet and health. Environmental Microbiology 2007, 9:1101-1111.
    • (2007) Environmental Microbiology , vol.9 , pp. 1101-1111
    • Flint, H.J.1    Duncan, S.H.2    Scott, K.P.3    Louis, P.4
  • 21
    • 33644952722 scopus 로고    scopus 로고
    • Minireviews: identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
    • Janssen P.H. Minireviews: identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Applied and Environmental Microbiology 2006, 72:1719-1728.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 1719-1728
    • Janssen, P.H.1
  • 22
    • 0033914692 scopus 로고    scopus 로고
    • Mathematical modeling of autotrophic denitrification in a nitrifying biofilm of a rotating biological contactor
    • Koch G., Egli K., van der Meer J.R., Siegrist H. Mathematical modeling of autotrophic denitrification in a nitrifying biofilm of a rotating biological contactor. Water Science and Technology 2000, 41:191-198.
    • (2000) Water Science and Technology , vol.41 , pp. 191-198
    • Koch, G.1    Egli, K.2    van der Meer, J.R.3    Siegrist, H.4
  • 23
    • 27144558632 scopus 로고    scopus 로고
    • Methods of microbial community profiling and their application to forest soils
    • Leckie S.E. Methods of microbial community profiling and their application to forest soils. Forest Ecology and Management 2005, 220:88-106.
    • (2005) Forest Ecology and Management , vol.220 , pp. 88-106
    • Leckie, S.E.1
  • 24
    • 33749820461 scopus 로고    scopus 로고
    • Bacterial community along a historic lake sediment core of Ardley Island, west Antarctica
    • Li S., Xiao X., Yin X., Wang F. Bacterial community along a historic lake sediment core of Ardley Island, west Antarctica. Extremophiles 2006, 10:461-467.
    • (2006) Extremophiles , vol.10 , pp. 461-467
    • Li, S.1    Xiao, X.2    Yin, X.3    Wang, F.4
  • 25
    • 54349107196 scopus 로고    scopus 로고
    • Bacterial diversity and community structure in polygonal tundra soils from Samoylov Island, Lena Delta, Siberia
    • Liebner S., Harder J., Wagner D. Bacterial diversity and community structure in polygonal tundra soils from Samoylov Island, Lena Delta, Siberia. International Microbiology 2008, 11:195-202.
    • (2008) International Microbiology , vol.11 , pp. 195-202
    • Liebner, S.1    Harder, J.2    Wagner, D.3
  • 26
    • 0029097821 scopus 로고
    • Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
    • Muyzer G., Teske A., Wirsen C.O., Jannasch H.W. Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Archives of Microbiology 1995, 164:165-172.
    • (1995) Archives of Microbiology , vol.164 , pp. 165-172
    • Muyzer, G.1    Teske, A.2    Wirsen, C.O.3    Jannasch, H.W.4
  • 27
    • 0042786707 scopus 로고    scopus 로고
    • Bacterioplankton community structure in a maritime Antarctic Oligotrophic Lake during a period of Holomixis, as determined by denaturing gradient gel electrophoresis (DGGE) and fluorescence in Situ hybridization (FISH)
    • Pearce D.A. Bacterioplankton community structure in a maritime Antarctic Oligotrophic Lake during a period of Holomixis, as determined by denaturing gradient gel electrophoresis (DGGE) and fluorescence in Situ hybridization (FISH). Microbial Ecology 2003, 46(1):92-105.
    • (2003) Microbial Ecology , vol.46 , Issue.1 , pp. 92-105
    • Pearce, D.A.1
  • 28
    • 0025740131 scopus 로고
    • Recovery of bulk DNA from soil by a rapid, small-scale extraction method
    • Porteous L.A., Armstrong J.L. Recovery of bulk DNA from soil by a rapid, small-scale extraction method. Current Microbiology 1991, 22:345-348.
    • (1991) Current Microbiology , vol.22 , pp. 345-348
    • Porteous, L.A.1    Armstrong, J.L.2
  • 29
    • 19544367285 scopus 로고    scopus 로고
    • Hydrocarbon-contamination changes the bacterial diversity of soil from around Scott Base, Antarctica
    • Saul D.J., Aislabie J.M., Brown C.E., Harris L., Foght J.M. Hydrocarbon-contamination changes the bacterial diversity of soil from around Scott Base, Antarctica. FEMS Microbiology Ecology 2005, 53:141-155.
    • (2005) FEMS Microbiology Ecology , vol.53 , pp. 141-155
    • Saul, D.J.1    Aislabie, J.M.2    Brown, C.E.3    Harris, L.4    Foght, J.M.5
  • 30
    • 0026585262 scopus 로고
    • Sphingobacterium antarcticus sp. nov. a psychrotrophic bacterium from the soils of Schirmacher Oasis, Antarctica
    • Shivaji S., Ray M.K., Rao N.S. Sphingobacterium antarcticus sp. nov. a psychrotrophic bacterium from the soils of Schirmacher Oasis, Antarctica. International Journal of Systematic Bacteriology 1991, 42:102-106.
    • (1991) International Journal of Systematic Bacteriology , vol.42 , pp. 102-106
    • Shivaji, S.1    Ray, M.K.2    Rao, N.S.3
  • 31
    • 2442637807 scopus 로고    scopus 로고
    • High 16S rDNA bacterial diversity in glacial meltwater lake sediment, Bratina Island, Antarctica
    • Sjoling S., Cowan D.A. High 16S rDNA bacterial diversity in glacial meltwater lake sediment, Bratina Island, Antarctica. Extremophiles 2003, 7:275-282.
    • (2003) Extremophiles , vol.7 , pp. 275-282
    • Sjoling, S.1    Cowan, D.A.2
  • 32
    • 33745487526 scopus 로고    scopus 로고
    • Bacterial diversity in three different Antarctica cold dessert mineral soils
    • Smith J.J., Tow L.A., Stafford W., Cary C., Cowan D.A. Bacterial diversity in three different Antarctica cold dessert mineral soils. Microbial Ecology 2006, 51:413-421.
    • (2006) Microbial Ecology , vol.51 , pp. 413-421
    • Smith, J.J.1    Tow, L.A.2    Stafford, W.3    Cary, C.4    Cowan, D.A.5
  • 33
    • 0032697215 scopus 로고    scopus 로고
    • Poles apart: biodiversity and biogeography of sea ice bacteria
    • Staley J.T., Gosink J.J. Poles apart: biodiversity and biogeography of sea ice bacteria. Annual Reviews of Microbiology 1999, 53:189-215.
    • (1999) Annual Reviews of Microbiology , vol.53 , pp. 189-215
    • Staley, J.T.1    Gosink, J.J.2
  • 34
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetic analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetic analysis (MEGA) software version 4.0. Molecular Biology and Evolution 2007, 24:1569-1599. http://www.kumarlab.net/publications.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1569-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 35
    • 0027202733 scopus 로고
    • Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and yeast
    • Tebbe C.C., Vahjen W. Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and yeast. Applied and Environmental Microbiology 1993, 59:2657-2665.
    • (1993) Applied and Environmental Microbiology , vol.59 , pp. 2657-2665
    • Tebbe, C.C.1    Vahjen, W.2
  • 36
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 1994, 22:4673-4680.
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 37
    • 0026597527 scopus 로고
    • Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction
    • Tsai Y.L., Olson B.H. Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction. Applied and Environmental Microbiology 1992, 58:754-757.
    • (1992) Applied and Environmental Microbiology , vol.58 , pp. 754-757
    • Tsai, Y.L.1    Olson, B.H.2
  • 38
    • 0034667173 scopus 로고    scopus 로고
    • Microbial mats of twenty-six lakes from Potter Peninsula, King George Island, Antarctica
    • Vinocur A., Pizarro H. Microbial mats of twenty-six lakes from Potter Peninsula, King George Island, Antarctica. Hydrobiologia 2000, 437:171-185.
    • (2000) Hydrobiologia , vol.437 , pp. 171-185
    • Vinocur, A.1    Pizarro, H.2
  • 39
    • 0033800457 scopus 로고    scopus 로고
    • Evolutionary origins of Antarctic microbiota: invasion, selection and endemism
    • Vincent W.F. Evolutionary origins of Antarctic microbiota: invasion, selection and endemism. Antarctic Science 2000, 12:374-385.
    • (2000) Antarctic Science , vol.12 , pp. 374-385
    • Vincent, W.F.1
  • 40
    • 34548293679 scopus 로고    scopus 로고
    • Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q., Garrity G.M., Tiedje J.M., Cole J. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology 2007, 73:5261-5267.
    • (2007) Applied and Environmental Microbiology , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.4
  • 41
    • 34247535366 scopus 로고    scopus 로고
    • Bacterial communities inside and in the vicinity of the Chines Great Wall Station, King George Island, Antarctica
    • Xiao X., Li M., You Z., Wang F. Bacterial communities inside and in the vicinity of the Chines Great Wall Station, King George Island, Antarctica. Antarctic Science 2007, 19:11-16.
    • (2007) Antarctic Science , vol.19 , pp. 11-16
    • Xiao, X.1    Li, M.2    You, Z.3    Wang, F.4
  • 42


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.