DGGE fingerprinting of bacteria in soils from eight ecologically different sites around casey station, Antarctica

Polar Biology

Volumn 32, Issue 6, 2009, Pages 853-860

  Chong, C W ^a   Annie Tan, G Y ^a   Wong, Richard C S ^b   Riddle, Martin J ^c   Tan, Irene K P ^a  

^a UNIVERSITY OF MALAYA   (Malaysia)

^b UNIVERSITY OF MALAYA   (Malaysia)

^c AUSTRALIAN ANTARCTIC DIVISION   (Australia)

Author keywords

Antarctica; DGGE; Environmental factors; Soil bacterial community

Indexed keywords

BACTERIUM; COMMUNITY STRUCTURE; COMPARATIVE STUDY; ELECTRICAL CONDUCTIVITY; ELECTROKINESIS; ENVIRONMENTAL FACTOR; GEL; HUMAN ACTIVITY; OIL SPILL; PH; RNA; SOIL CARBON; SOIL MICROORGANISM;

ANTARCTICA; CASEY STATION; EAST ANTARCTICA;

BACTERIA (MICROORGANISMS); BACTEROIDES; BACTEROIDES (CLASS); CYTOPHAGA; FLEXIBACTER;

EID: 67349272096     PISSN: 07224060     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00300-009-0585-6     Document Type: Article

References (35)

1. JM Aislabie K Chhour DJ Saul S Miyauchi J Ayton RF Paetzold MR Balks 2006 Dominant bacteria in soils of Marble Point and Wright Valley, Victoria Land, Antarctica Soil Biol Biochem 38 3041 3056 10.1016/j.soilbio.2006.02.018 (Pubitemid 44402520)
2. JM Aislabie S Jordan GM Barker 2008 Relation between soil classification and bacterial diversity in soils of the Ross Sea region, Antarctica Geoderma 144 9 20 10.1016/j.geoderma.2007.10.006
3. L Beyer M Bolter 2000 Chemical and biological properties, formation, occurrence and classification of Spodic Cryosols in a terrestrial ecosystem of East Antarctica (Wilkes Land) Catena 39 95 119 10.1016/S0341-8162(99)00089-2 (Pubitemid 30168075)
4. M Bolter 1992 Environmental conditions and microbiological properties from soils and lichens from Antarctica (Casey Station, Wilkes Land) Polar Biol 11 591 599 10.1007/BF00237953 (Pubitemid 23396477)
5. GGC Claridge IB Campbell HKJ Powell ZH Amin MR Balks 1995 Heavy metal contamination in some soils of the McMurdo Sound region, Antarctica Ant Sci 7 1 9 14 10.1017/S0954102095000034
6. T Coenye S Laevens A Willems M Ohlén W Hannant JRW Govan M Gillis E Falsen P Vandamme 2001 Burkholderia fungorum sp nov. and Burkholderia caledonica sp. nov., two new species isolated from the environment, animals and human clinical samples J Syst Evol Microbiol 51 1099 1107 (Pubitemid 32499317)
7. U Dorigo L Volatier JF Humbert 2005 Molecular approaches to the assessment of biodiversity in aquatic microbial communities Water Res 39 2207 2218 10.1016/j.watres.2005.04.007 (Pubitemid 40840673)
8. GM Gadd AJ Griffiths 1978 Microorganisms and heavy metal toxicity Microb Ecol 4 303 317 10.1007/BF02013274 (Pubitemid 9114451)
9. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackerbrandt E, Goodfellow M (eds) Nucliec acid techniques in bacterial systematics. Wiley, New York, pp 115-175
10. MB Hinojosa JA Carreira R García-Ruíz RP Dick 2005 Microbial response to heavy metal-polluted soils: community analysis from phospholipid-linked fatty acids and ester-linked fatty acids extracts J Environ Qual 34 1789 1800 10.2134/jeq2004.0470 (Pubitemid 41395827)
11. A Konopka T Zakharova M Bischoff L Oliver C Nakatsu RF Turco 1999 Microbial biomass and activity in lead-contaminated soil Appl Environ Microbiol 65 5 2256 2259 (Pubitemid 129526232)
12. S Li X Xiao X Yin F Wang 2006 Bacterial community along a historic lake sediment core of Ardley Island, West Antarctica Extremophiles 10 461 467 10.1007/s00792-006-0523-2 (Pubitemid 44564009)
13. G Muyzer 1999 DGGE/TGGE a method for identifying genes from natural ecosystems Curr Opin Microbiol 2 317 322 10.1016/S1369-5274(99)80055-1 (Pubitemid 29260154)
14. CJ Newberry G Webster BA Cragg RJ Parkes AJ Weightman JC Fry 2004 Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190 Environ Microbiol 6 3 274 287 10.1111/j.1462-2920.2004.00568.x (Pubitemid 38261026)
15. DA Pearce 2003 Bacterioplankton community structure in a Maritime Antarctic oligotrophic lake during period of Holomixis, as determined by denaturing gradient gel electrophoresis (DGGE) and fluorescence in situ hydridization (FISH) Microb Ecol 46 92 105 10.1007/s00248-002-2039-3 (Pubitemid 37105894)
16. SM Powell JP Bowman I Snape JS Stark 2003 Microbial community in pristine and polluted nearshore Antarctic sediments FEMS Microbiol Ecol 45 135 145 10.1016/S0168-6496(03)00135-1 (Pubitemid 36859783)
17. SM Powell I Snape JP Bowman BAW Thompson JS Stark SA McCammon MJ Riddle 2004 A comparison of the short term effects of diesel fuel and lubricant oils on Antarctic benthic microbial communities J Exp Mar Biol Ecol 322 53 65 10.1016/j.jembe.2005.02.005
18. AT Revill I Snape A Lucieer D Guille 2007 Constraints on transport and weathering of petroleum contamination at Casey Station, Antarctica Cold Regions Sci Technol 48 154 167
19. DJ Roser RD Seppelt N Ashbolt 1993 Microbiology of ornithogenic soils from the windmill islands, budd coast, continental Antarctica: Microbial biomass distribution Soil Biol Biochem 25 2 165 175 10.1016/0038-0717(93)90023-5 (Pubitemid 24408610)
20. IR Santos EV Silva-Filho CEGR Schaefer MR Albuquerque-Filho LS Campos 2005 Heavy metal contamination in coastal sediments and soils near the Brazilian Antarctic Station, King George Island Mar Pollut Bull 50 185 194 10.1016/j.marpolbul.2004.10.009 (Pubitemid 40298993)
21. DJ Saul JM Aislabie CE Brown L Harris JM Foght 2005 Hydrocarbon contamination changes the bacterial diversity of soil from around Scott Base, Antarctica FEMS Microbiol Ecol 53 141 155 10.1016/j.femsec.2004.11.007 (Pubitemid 40733516)
22. RC Scouller I Snape JS Stark DB Gore 2006 Evaluation of geochemical methods for discrimination of metal contamination in Antarctic marine sediments: a case study from Casey Station Chemosphere 65 294 309 10.1016/j.chemosphere. 2006.02.062 (Pubitemid 44163355)
23. T Shigematsu K Yumihara Y Ueda M Numaguchi S Morimura K Kida 2003 Delftia tsuruhatensis sp. nov., a terephthalate-assimilating bacterium isolated from activated sludge Int J Syst Evol Microbiol 53 1479 1483 10.1099/ijs.0.02285-0 (Pubitemid 37184979)
24. I Snape RC Scouller SC Stark J Stark MJ Riddle JB Gore 2004 Characterisation of the dilute HCl extraction method for the identification of metal contamination in Antarctic marine sediments Chemosphere 57 491 504 10.1016/j.chemosphere.2004.05.042 (Pubitemid 39179768)
25. I Snape SH Ferguson PM Harvey MJ Riddle 2006 Investigation of evaporation and biodegradation of fuel spills in Antarctica: II-Extent of natural attenuation at Casey Station Chemosphere 63 89 98 10.1016/j.chemosphere.2005.07. 040
26. JS Stark 2000 The distribution and abundance of soft-sediment macrobenthos around Casey Station, East Antarctica Polar Biol 23 840 850 10.1007/s003000000162
27. JS Stark MJ Riddle I Snape RC Scouller 2003 Human impacts in Antartic marine soft-sediment assemblages: correlations between multivariate biological patterns and environmental variables at Casey Station Estuar Coast Shelf Sci 56 717 734 10.1016/S0272-7714(02)00291-3 (Pubitemid 36647040)
28. JS Stark I Snape MJ Riddle SC Stark 2005 Constraints on spatial variability in soft-sediment communities affected by contamination from an Antarctic waste disposal site Mar Pollut Bull 50 276 290 10.1016/j.marpolbul. 2004.10.015 (Pubitemid 40332378)
29. K Thangaraj A Kapley HJ Purohit 2008 Characterization of diverse Acinetobacter isolates for utilization of multiple aromatic compounds Bioresour Technol 99 2488 2494 10.1016/j.biortech.2007.04.053
30. AT Townsend I Snape 2008 Multiple Pb sources in marine sediments near the Australian Antarctic Station, Casey Sci Total Environ 389 466 474 10.1016/j.scitotenv.2007.09.022 (Pubitemid 350101763)
31. Wasley J (2004) The effect of climate change on Antarctic terrestrial flora. Ph.D. thesis, University of Wollongong
32. G Webster M Embley JI Prosser 2002 Grassland management regimens reduce small-scale heterogeneity and species diversity of proteobacterial ammonia oxidizer Populations Appl Environ Microbiol 68 20 30 10.1128/AEM.68.1.20-30.2002 (Pubitemid 34031158)
33. G Webster GJ Newberry JC Fry AJ Weightman 2003 Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale J Microbiol Methods 55 155 164 10.1016/S0167-7012(03)00140-4 (Pubitemid 37297655)
34. X Xiao M Li Z You F Wang 2007 Bacterial communities inside and in the vicinity of the Chinese Great Wall Station, King George Island, Antarctica Antarct Sci 19 11 16 10.1017/S095410200700003X (Pubitemid 46662187)
35. E Yergeau S Bokhorst AHL Huiskes HTS Boschker R Aerts GA Kowalchuk 2007 Size and structure of bacterial, fungal and nematode communities along an Antarctic environmental gradient FEMS Microbiol Ecol 59 436 451 10.1111/j.1574-6941.2006.00200.x (Pubitemid 46105882)