Quantitative FRET measurement by high-speed Fluorescence Excitation and Emission spectrometer

Optics Express

Volumn 18, Issue 18, 2010, Pages 18839-18851

  Yuan, Jing ^a,b   Peng, Leilei ^a,c   Bouma, Brett E ^a   Tearney, Guillermo J ^a  

^a MASSACHUSETTS GENERAL HOSPITAL   (United States)

^b HUAZHONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^c UNIVERSITY OF ARIZONA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; ENERGY TRANSFER; SPECTROMETERS; SPECTROMETRY;

CROSS CORRELATIONS; EMISSION PROPERTIES; EMISSION SPECTROMETERS; EXCITATION EMISSION MATRICES; FLUORESCENCE EXCITATION; FLUORESCENCE INTENSITIES; FLUORESCENT SIGNALS; FOURIER; HIGH-SPEED; LINEAR UNMIXING; REACTION STUDIES; RESONANCE ENERGY TRANSFER;

FLUORESCENCE;

ALGORITHM; ANIMAL; ARTICLE; BIOCHEMISTRY; CALIBRATION; EQUIPMENT DESIGN; FLUORESCENCE RESONANCE ENERGY TRANSFER; FOURIER ANALYSIS; METHODOLOGY; MOUSE; OPTICS; RABBIT; SPECTROFLUOROMETRY; STATISTICAL MODEL; TIME;

ALGORITHMS; ANIMALS; BIOCHEMISTRY; CALIBRATION; EQUIPMENT DESIGN; FLUORESCENCE RESONANCE ENERGY TRANSFER; FOURIER ANALYSIS; MICE; MODELS, STATISTICAL; OPTICS AND PHOTONICS; RABBITS; SPECTROMETRY, FLUORESCENCE; TIME FACTORS;

EID: 77956367868     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.18.018839     Document Type: Article

References (43)

1. T. Förster, "Zwischenmolekulare energiewanderung und fluoreszenz," Ann. Phys. 437(1-2), 55-75 (1948).
2. J. R. Lakowicz, Principles of fluorescence spectroscopy (Kluwer Academic/Plenum Publishers, 1999).
3. D. W. Piston, and G. J. Kremers, "Fluorescent protein FRET: the good, the bad and the ugly," Trends Biochem. Sci. 32(9), 407-414 (2007).
4. E. A. Jares-Erijman, and T. M. Jovin, "Imaging molecular interactions in living cells by FRET microscopy," Curr. Opin. Chem. Biol. 10(5), 409-416 (2006).
5. C. Berney, and G. Danuser, "FRET or no FRET: a Quantitative Comparison," Biophys. J. 84(6), 3992-4010 (2003).
6. B. A. Pollok, and R. Heim, "Using GFP in FRET-based applications," Trends Cell Biol. 9(2), 57-60 (1999).
7. A. Miyawaki, "Visualization of the Spatial and Temporal Dynamics of Intracellular Signaling," Dev. Cell 4(3), 295-305 (2003).
8. K. Truong, and M. Ikura, "The use of FRET imaging microscopy to detect protein-protein interactions and protein conformational changes in vivo," Curr. Opin. Struct. Biol. 11(5), 573-578 (2001).
9. R. Roy, S. Hohng, and T. Ha, "A practical guide to single-molecule FRET," Nat. Methods 5(6), 507-516 (2008).
10. X. Zhuang, "Single-molecule RNA science," Annu. Rev. Biophys. Biomol. Struct. 34(1), 399-414 (2005).
11. R. Seidel, and C. Dekker, "Single-molecule studies of nucleic acid motors," Curr. Opin. Struct. Biol. 17(1), 80-86 (2007).
12. X. Michalet, S. Weiss, and M. Jäger, "Single-Molecule Fluorescence Studies of Protein Folding and Conformational Dynamics," Chem. Rev. 106(5), 1785 - 1813 (2006).
13. R. D. Smiley, and G. G. Hammes, "Single molecule studies of enzyme mechanisms," Chem. Rev. 106(8), 3080-3094 (2006).
14. M. Margittai, J. Widengren, E. Schweinberger, G. F. Schröder, S. Felekyan, E. Haustein, M. König, D. Fasshauer, H. Grubmüller, R. Jahn, and C. A. M. Seidel, "Single-molecule fluorescence resonance energy transfer reveals a dynamic equilibrium between closed and open conformations of syntaxin 1," Proc. Natl. Acad. Sci. U.S.A. 100(26), 15516-15521 (2003).
15. E. A. Lipman, B. Schuler, O. Bakajin, and W. A. Eaton, "Single-molecule measurement of protein folding kinetics," Science 301(5637), 1233-1235 (2003).
16. T. Zal, and N. R. J. Gascoigne, "Photobleaching-Corrected FRET Efficiency Imaging of Live Cells," Biophys. J. 86(6), 3923-3939 (2004).
17. 2+ Channels Revealed by FRET in Single Living Cells," Neuron 31(6), 973-985 (2001).
18. G. W. Gordon, G. Berry, X. H. Liang, B. Levine, and B. Herman, "Quantitative Fluorescence Resonance Energy Transfer Measurements Using Fluorescence Microscopy," Biophys. J. 74(5), 2702-2713 (1998).
19. R. D. Mitra, C. M. Silva, and D. C. Youvan, "Fluorescence resonance energy transfer between blue-emitting and red-shifted excitation derivatives of the green fluorescent protein," Gene 173(1 1 Spec No), 13-17 (1996).
20. R. A. Neher, and E. Neher, "Applying spectral fingerprinting to the analysis of FRET images," Microsc. Res. Tech. 64(2), 185-195 (2004).
21. Y. Chen, J. P. Mauldin, R. N. Day, and A. Periasamy, " Characterization of spectral FRET imaging microscopy for monitoring nuclear protein interactions," J. Microsc. 228(2), 139-152 (2007).
22. E. B. Van Munster, G. J. Kremers, M. J. Adjobo-Hermans, and T. W. Gadella, Jr., "Fluorescence resonance energy transfer (FRET) measurement by gradual acceptor photobleaching," J. Microsc. 218(3), 253-262 (2005).
23. A. K. Kenworthy, "Imaging Protein-Protein Interactions Using Fluorescence Resonance Energy Transfer Microscopy," Methods 24(3), 289-296 (2001).
24. V. M. Mekler, A. Z. Averbakh, A. B. Sudarikov, and O. V. Kharitonova, "Fluorescence energy transfersensitized photobleaching of a fluorescent label as a tool to study donor-acceptor distance distributions and dynamics in protein assemblies: studies of a complex of biotinylated IgM with streptavidin and aggregates of concanavalin A," J. Photochem. Photobiol. B 40(3), 278-287 (1997).
25. G. Valentin, C. Verheggen, T. Piolot, H. Neel, M. Coppey-Moisan, and E. Bertrand, "Photoconversion of YFP into a CFP-like species during acceptor photobleaching FRET experiments," Nat. Methods 2(11), 801 (2005).
26. R. M. Clegg, "Fluorescence resonance energy transfer," Curr. Opin. Biotechnol. 6(1), 103-110 (1995).
27. J. Wlodarczyk, A. Woehler, F. Kobe, E. Ponimaskin, A. Zeug, and E. Neher, "Analysis of FRET signals in the presence of free donors and acceptors," Biophys. J. 94(3), 986-1000 (2008).
28. S. Padilla-Parra, N. Audugé, M. Coppey-Moisan, and M. Tramier, "Quantitative FRET analysis by fast acquisition time domain FLIM at high spatial resolution in living cells," Biophys. J. 95(6), 2976-2988 (2008).
29. A. R. Muroski, K. S. Booksh, and M. L. Myrick, "Single-Measurement Excitation/Emission Matrix Spectrofluorometer for Determination of Hydrocarbons in Ocean Water. 1. Instrumentation and Background Correction," Anal. Chem. 68(20), 3534-3538 (1996).
30. R. A. Zângaro, L. Silveira, R. Manoharan, G. Zonios, I. Itzkan, R. R. Dasari, J. Van Dam, and M. S. Feld, "Rapid multiexcitation fluorescence spectroscopy system for in vivo tissue diagnosis," Appl. Opt. 35(25), 5211-5219 (1996).
31. A. F. Zuluaga, U. Utzinger, A. Durkin, H. Fuchs, A. Gillenwater, R. Jacob, B. Kemp, J. Fan, and R. Richards- Kortum, "Fluorescence Excitation Emission Matrices of Human Tissue: A System for in Vivo Measurement and Method of Data Analysis," Appl. Spectrosc. 53(3), 302-311 (1999).
32. M. G. Müller, A. Wax, I. Georgakoudi, R. R. Dasari, and M. S. Feld, "A reflectance spectrofluorimeter for realtime spectral diagnosis of disease," Rev. Sci. Instrum. 73(11), 3933-3937 (2002).
33. A. Muñoz-Losa, C. Curutchet, B. P. Krueger, L. R. Hartsell, and B. Mennucci, "Fretting about FRET: failure of the ideal dipole approximation," Biophys. J. 96(12), 4779-4788 (2009).
34. M. Gouzman, N. Lifshitz, S. Luryi, O. Semyonov, D. Gavrilov, and V. Kuzminskiy, "Excitation-Emission Fluorimeter Based on Linear Interference Filters," Appl. Opt. 43(15), 3066-3072 (2004).
35. C. D. Tran, and R. J. Furlan, "Spectrofluorometer based on acousto-optic tunable filters for rapid scanning and multicomponent sample analyses," Anal. Chem. 65(13), 1675-1681 (1993).
36. J. G. Hirschberg, G. Vereb, C. K. Meyer, A. K. Kirsch, E. Kohen, and T. M. Jovin, "Interferometric measurement of fluorescence excitation spectra," Appl. Opt. 37(10), 1953-1957 (1998).
37. L. Peng, J. T. Motz, R. W. Redmond, B. E. Bouma, and G. J. Tearney, "Fourier transform emission lifetime spectrometer," Opt. Lett. 32(4), 421-423 (2007).
38. L. Peng, J. A. Gardecki, B. E. Bouma, and G. J. Tearney, "Fourier fluorescence spectrometer for excitation emission matrix measurement," Opt. Express 16(14), 10493-10500 (2008).
39. A. D. Hoppe, S. L. Shorte, J. A. Swanson, and R. Heintzmann, "Three-dimensional FRET reconstruction microscopy for analysis of dynamic molecular interactions in live cells," Biophys. J. 95(1), 400-418 (2008).
40. J. G. Hirschberg, and E. Kohen, "Pentaferometer: a solid Sagnac interferometer," Appl. Opt. 38(1), 136-138 (1999).
41. P. R. Griffiths, B. L. Hirsche, and C. J. Manning, "Ultra-rapid- scanning Fourier transform infrared spectrometry," Vib. Spectrosc. 19(1), 165-176 (1999).
42. V. Saptari, Fourier-Transform Spectroscopy Instrumentation Engineering, Tutorial texts in optical engineering (SPIE Press, 3 November 2003), Vol.TT61, p. 118.
43. X. Liu, M. J. Cobb, and X. Li, "Rapid scanning all-reflective optical delay line for real-time optical coherence tomography," Opt. Lett. 29(1), 80-82 (2004).