Transcriptional analysis of the pre-erythrocytic stages of the rodent malaria parasite, Plasmodium yoelii

PLoS ONE

Volumn 5, Issue 4, 2010, Pages

  Williams, Calvin T ^a   Azad, Abdu F ^a  

^a UNIVERSITY OF MARYLAND SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ANOPHELES STEPHENSI; ARTICLE; CONTROLLED STUDY; FEMALE; GENE EXPRESSION PROFILING; GENETIC TRANSCRIPTION; LASER CAPTURE MICRODISSECTION; LIVER PARENCHYMA; MICROARRAY ANALYSIS; MOUSE; NONHUMAN; PATHOPHYSIOLOGY; PLASMODIUM YOELII; PLASMODIUM YOELII INFECTION; SALIVARY GLAND; SCHIZONT; SPOROZOITE; WILD TYPE; ANIMAL; GENE; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; LIFE CYCLE; LIVER; MALARIA; PARASITOLOGY; TIME;

MAMMALIA; MUS; PLASMODIUM YOELII; RODENTIA;

ANIMALS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENES, PROTOZOAN; LIFE CYCLE STAGES; LIVER; MALARIA; MICE; PLASMODIUM YOELII; SCHIZONTS; SPOROZOITES; TIME FACTORS;

EID: 77956304481     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0010267     Document Type: Article

References (43)

1. Hoffman SL, Oster CN, Plowe CV, Woollett GR, Beier JC, et al. (1987) Naturally acquired antibodies to sporozoites do not prevent malaria: vaccine development implications. Science 237: 639-642.
2. Greenwood BM (1990) Immune responses to sporozoite antigens and their relationship to naturally acquired immunity to malaria. Bull World Health Organ 68(Suppl): 184-190.
3. Richards WHG (1966) Active immunization of chicks against Plasmodium gallinaceum by inactivated homologous sporozoites and erythrocytic parasites. Nature 212: 1492-1494.
4. Nussenzweig RS, Vanderberg J, Most H, Orton C (1967) Protective immunity produced by the injection of x-irradiated sporozoites of Plasmodium berghei. Nature 216: 160-162.
5. Clyde DF, McCarthy VC, Miller RM, Woodward WE (1973) Immunization of man against sporozite-induced falciparum malaria. Am J Med Sci 266: 169-177.
6. Clyde, DF (1975) Immunization of man against falciparum and vivax malaria by use of attenuated sporozoites. Am J Trop Med Hyg 24: 397-401.
7. Clyde DF, McCarthy VC, Miller RM, Hornick RB (1973) Specificity of protection of man immunized against sporozoite-induced falciparum malaria. Am J Med Sci 266: 398-403.
8. Hoffman SL, Goh LM, Luke TC, Schneider I, Le TP, et al. (2002) Protection of humans against malaria by immunization with radiation-attenuated Plasmodium falciparum sporozoites. J Infect Dis 185: 1155-1164.
9. Chakravarty S, Cockburn IA, Kuk K, Overstreet MG, Sacci JB, et al. (2007) CD8+ T lymphocytes protective against malaria liver stages are primed in skindraining lymph nodes. Nat Med 13: 1035-1041.
10. Hoffman SL, Isenbarger D, Long GW, Sedegah M, Szarfman A, et al. (1989) Sporozoite vaccine induces genetically restricted T cell elimination of malaria from hepatocytes. Science 244: 1078-1081.
11. Silvie O, Semblat JP, Franetich JF, Hannoun L, Eling W, et al. (2002) Effects of irradiation on Plasmodium falciparum sporozoite hepatic development: implications for the design of pre-erythrocytic malaria vaccines. Parasite Immunol 24: 221-223.
12. Roxas B, Li Q (2008) Significance analysis of microarray for relative quantitation of LC/MS data in proteomics. BMC Bioinformatics 9: 187.
13. Storey JD (2003) The positive discovery rate: a Bayesian interpretation and the q-value. The Annuals of Statistics 31: 2013-2035.
14. Tusher VG, Tibshirani R, Chu G (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 98: 5116-21.
15. Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 95: 14863-14868.
16. Weinstein JN, Myers TG, O'Connor PM, Friend SH, Fornace Jr. AJ, et al. (1997) An information-intensive approach to the molecular pharmacology of cancer. Science 275: 343-349.
17. Wen X, Fuhrman S, Michaels GS, Carr DB, Smith S, et al. (1998) Large-scale temporal gene expression mapping of central nervous system development. Proc Natl Acad Sci USA 95: 334-339.
18. Sultan AA, Thathy V, Frevert U, Robson KJ, Crisanti A, et al. (1997) TRAP is necessary for gliding motility and infectivity of Plasmodium sporozoites. Cell 90: 511-522.
19. Mueller AK, Camargo N, Kaiser K, Andorfer C, Frevert U, et al. (2005) Plasmodium liver stage developmental arrest by depletion of a protein at the parasite-host interface. Proc Natl Acad Sci USA 102: 3022-3027.
20. Mueller AK, Labaied M, Kappe SH, Matuschewski K (2005) Genetically modified Plasmodium parasites as a protective experimental malaria vaccine. Nature 433: 164-167.
21. Coppi A, Pinzon-Ortiz C, Hutter C, Sinnis P (2005) The Plasmodium circumsporozoite protein is proteolytically processed during cell invasion. J Exp Med 201: 27-33.
22. Aly AS, Mikolajczak SA, Rivera HS, Camargo N, Jacobs-Lorena V, et al. (2008) Targeted deletion of SAP1 abolishes the expression of infectivity factors necessary for successful malaria parasite liver infection. Mol Microbiol 69: 152-163.
23. Tarun AS, Peng X, Dumpit RF, Ogata Y, Silva-Rivera H, et al. (2008) A combined transcriptome and proteome survey of malaria parasite liver stages. Proc Natl Acad Sci USA 105: 305-310.
24. Zhou Y, Ramachandran V, Kumar KA, Westenberger S, Refour P, et al. (2008) Evidence-based annotation of the malaria parasite's genome using comparative expression profiling. PLoS One 3: e1570.
25. Janssen CS, Barrett MP, Turner CM, Phillips RS (2002) A large gene family for putative variant antigens shared by human and rodent malaria parasites. Proc Biol Sci 269: 431-436.
26. Bodescot M, Silvie O, Siau A, Refour P, Pino P, et al. (2004) Transcription status of vaccine candidate genes of Plasmodium falciparum during the hepatic phase of its life cycle. Parasitol Res 92: 449-452.
27. Fiscella M, Perry JW, Teng B, Bloom M, Zhang C, et al. (2003) TIP, a T-cell factor identified using high-throughput screening increases survival in a graftversus- host disease model. Nat Biotechnol 21: 302-307.
28. Hoffman BU, Chattopadhyay R (2008) Plasmodium falciparum: effect of radiation on levels of gene transcripts in sporozoites. Exp Parasitol 118: 247-252.
29. Siau A, Silvie O, Franetich JF, Yalaoui S, Marinach C, et al. (2008) Temperature shift and host cell contact up-regulate sporozoite expression of Plasmodium falciparum genes involved in hepatocyte infection. PLoS Pathog, 4: e1000121.
30. Sacci Jr. JB, Ribeiro JM, Huang F, Alam U, Russell JA, et al. (2005) Transcriptional analysis of in vivo Plasmodium yoelii liver stage gene expression. Mol Biochem Parasitol 142: 177-183.
31. Yu M, Kumar TR, Nkrumah LJ, Coppi A, Retzlaff S, et al. (2008) The fatty acid biosynthesis enzyme FabI plays a key role in the development of liver-stage malarial parasites. Cell Host Microbe 4: 567-78.
32. Vaughan AM, O'Neill MT, Tarun AS, Camargo N, Phuong TM, et al. (2009) Type II fatty acid synthesis is essential only for malaria parasite late liver stage development. Cell Microbiology 11: 506-520.
33. Sharma SK, Kapoor M, Ramya TN, Kumar S, Kumar G, et al. (2003) Identification, characterization, and inhibition of Plasmodium falciparum betahydroxyacyl- acyl carrier protein dehydratase (FabZ). J Biol Chem 278: 45661-45671.
34. Ralph SA, van Dooren GG, Waller RF, Crawford MJ, Fraunholz MJ, et al. (2004) Tropical infectious diseases: metabolic maps and functions of the Plasmodium falciparum apicoplast. Nat Rev Microbiol 2: 203-216.
35. Pei Y, Tarun AS, Vaughan AM, Herman RW, Soliman JM, et al. (2010) Plasmodium pyruvate dehydrogenase activity is only essential for the parasite's progression from liver infection to blood infection. Molecular Microbiology;doi: 10.1111/j.1365-2958.2009.07034.x.
36. Kuo WP, Jenssen TK, Butte AJ, Ohno-Machado L, Kohane IS (2002) Analysis of matched mRNA measurements from two different microarray technologies. Bioinformatics 18: 405-412.
37. Järvinen AK, Hautaniemi S, Edgren H, Auvinen P, Saarela J, et al. (2004) Are data from different gene expression microarray platforms comparable? Genomics 83: 1164-1168.
38. Hardiman G (2004) Microarray platforms-comparisons and contrasts Pharmacogenomics 5: 487-502.
39. Zhang M, Yao C, Guo Z, Zou J, Zhang L, et al. (2008) Apparently low reproducibility of true differential expression discoveries in microarray studies. Bioinformatics 24: 2057-2063.
40. Doolan DL, Hedstrom RC, Rogers WO, Charoenvit Y, Rogers M, et al. (1996) Identification and characterization of the protective hepatocyte erythrocyte protein 17 kDa gene of Plasmodium yoelii, homolog of Plasmodium falciparum exported protein 1. J Biol Chem 271: 17861-17868.
41. Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, et al. (2002) Genome sequence and comparative analysis of the model rodent malaria parasite. Plasmodium yoelii yoelii. Nature 419: 512-519.
42. Sturn A, Quackenbush J, Trajanoski Z (2002) Genesis: cluster analysis of microarray data. Bioinformatics 18: 207-208.
43. Pfaffl MW (2001) A new mathematical model for relative quantification in realtime RT-PCR. Nucleic Acids Res 29: e45.