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Volumn 5, Issue 4, 2010, Pages

Analysis of multiple sarcoma expression datasets: Implications for classification, oncogenic pathway activation and chemotherapy resistance

Author keywords

[No Author keywords available]

Indexed keywords

CYCLOPHOSPHAMIDE; DOCETAXEL; DOXORUBICIN;

EID: 77956299890     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0009747     Document Type: Article
Times cited : (16)

References (42)
  • 1
    • 0031303021 scopus 로고    scopus 로고
    • Soft tissue tumours: The impact of cytogenetics and molecular genetics
    • Fletcher CD (1997) Soft tissue tumours: the impact of cytogenetics and molecular genetics. Verh Dtsch Ges Pathol 81: 318-326.
    • (1997) Verh Dtsch Ges Pathol , vol.81 , pp. 318-326
    • Fletcher, C.D.1
  • 2
    • 40549134987 scopus 로고    scopus 로고
    • Diagnosis and management of pleomorphic sarcomas (so-called "MFH") in adults
    • Nascimento AF, Raut CP (2008) Diagnosis and management of pleomorphic sarcomas (so-called "MFH") in adults. J Surg Oncol 97: 330-339.
    • (2008) J Surg Oncol , vol.97 , pp. 330-339
    • Nascimento, A.F.1    Raut, C.P.2
  • 3
    • 33846783041 scopus 로고    scopus 로고
    • Soft tissue sarcoma: An overview
    • quiz 12-13
    • Goldberg BR (2007) Soft tissue sarcoma: An overview. Orthop Nurs 26: 4-11; quiz 12-13.
    • (2007) Orthop Nurs , vol.26 , pp. 4-11
    • Goldberg, B.R.1
  • 4
    • 39149127634 scopus 로고    scopus 로고
    • Phase III randomized, intergroup trial assessing imatinib mesylate at two dose levels in patients with unresectable or metastatic gastrointestinal stromal tumors expressing the kit receptor tyrosine kinase: S0033
    • Blanke CD, Rankin C, Demetri GD, Ryan CW, von Mehren M, et al. (2008) Phase III randomized, intergroup trial assessing imatinib mesylate at two dose levels in patients with unresectable or metastatic gastrointestinal stromal tumors expressing the kit receptor tyrosine kinase: S0033. J Clin Oncol 26: 626-632.
    • (2008) J Clin Oncol , vol.26 , pp. 626-632
    • Blanke, C.D.1    Rankin, C.2    Demetri, G.D.3    Ryan, C.W.4    von Mehren, M.5
  • 6
    • 34249946843 scopus 로고    scopus 로고
    • Molecular pathology in sarcomas
    • de Alava E (2007) Molecular pathology in sarcomas. Clin Transl Oncol 9: 130-144.
    • (2007) Clin Transl Oncol , vol.9 , pp. 130-144
    • de Alava, E.1
  • 7
    • 0023243237 scopus 로고
    • Adult soft tissue sarcomas. A pattern of care survey of the American College of Surgeons
    • Lawrence W, Jr., Donegan WL, Natarajan N, Mettlin C, Beart R, et al. (1987) Adult soft tissue sarcomas. A pattern of care survey of the American College of Surgeons. Ann Surg 205: 349-359.
    • (1987) Ann Surg , vol.205 , pp. 349-359
    • Lawrence Jr., W.1    Donegan, W.L.2    Natarajan, N.3    Mettlin, C.4    Beart, R.5
  • 8
    • 1242338945 scopus 로고    scopus 로고
    • Current soft-tissue sarcoma classifications
    • Daugaard S (2004) Current soft-tissue sarcoma classifications. Eur J Cancer 40: 543-548.
    • (2004) Eur J Cancer , vol.40 , pp. 543-548
    • Daugaard, S.1
  • 9
    • 0035063789 scopus 로고    scopus 로고
    • Molecular profiling of breast cancer: Portraits but not physiognomy
    • Brenton JD, Aparicio SA, Caldas C (2001) Molecular profiling of breast cancer: portraits but not physiognomy. Breast Cancer Res 3: 77-80.
    • (2001) Breast Cancer Res , vol.3 , pp. 77-80
    • Brenton, J.D.1    Aparicio, S.A.2    Caldas, C.3
  • 10
    • 0035347332 scopus 로고    scopus 로고
    • Gene expression profiling of lymphomas
    • Hegde U, Wilson WH (2001) Gene expression profiling of lymphomas. Curr Oncol Rep 3: 243-249.
    • (2001) Curr Oncol Rep , vol.3 , pp. 243-249
    • Hegde, U.1    Wilson, W.H.2
  • 11
    • 0034303643 scopus 로고    scopus 로고
    • Molecular profiling of human cancer
    • Liotta L, Petricoin E (2000) Molecular profiling of human cancer. Nat Rev Genet 1: 48-56.
    • (2000) Nat Rev Genet , vol.1 , pp. 48-56
    • Liotta, L.1    Petricoin, E.2
  • 12
    • 27144523169 scopus 로고    scopus 로고
    • Gene expression profiling of human sarcomas: Insights into sarcoma biology
    • Baird K, Davis S, Antonescu CR, Harper UL, Walker RL, et al. (2005) Gene expression profiling of human sarcomas: insights into sarcoma biology. Cancer Res 65: 9226-9235.
    • (2005) Cancer Res , vol.65 , pp. 9226-9235
    • Baird, K.1    Davis, S.2    Antonescu, C.R.3    Harper, U.L.4    Walker, R.L.5
  • 14
    • 43149108659 scopus 로고    scopus 로고
    • Subclass mapping: Identifying common subtypes in independent disease data sets
    • Hoshida Y, Brunet JP, Tamayo P, Golub TR, Mesirov JP (2007) Subclass mapping: identifying common subtypes in independent disease data sets. PLoS ONE 2: e1195.
    • (2007) PLoS ONE , vol.2
    • Hoshida, Y.1    Brunet, J.P.2    Tamayo, P.3    Golub, T.R.4    Mesirov, J.P.5
  • 16
    • 0036795899 scopus 로고    scopus 로고
    • Approval summary: Imatinib mesylate in the treatment of metastatic and/or unresectable malignant gastrointestinal stromal tumors
    • Dagher R, Cohen M, Williams G, Rothmann M, Gobburu J, et al. (2002) Approval summary: imatinib mesylate in the treatment of metastatic and/or unresectable malignant gastrointestinal stromal tumors. Clin Cancer Res 8: 3034-3038.
    • (2002) Clin Cancer Res , vol.8 , pp. 3034-3038
    • Dagher, R.1    Cohen, M.2    Williams, G.3    Rothmann, M.4    Gobburu, J.5
  • 17
    • 0026528224 scopus 로고
    • Pleomorphic malignant fibrous histiocytoma: Fact or fiction? A critical reappraisal based on 159 tumors diagnosed as pleomorphic sarcoma
    • Fletcher CD (1992) Pleomorphic malignant fibrous histiocytoma: fact or fiction? A critical reappraisal based on 159 tumors diagnosed as pleomorphic sarcoma. Am J Surg Pathol 16: 213-228.
    • (1992) Am J Surg Pathol , vol.16 , pp. 213-228
    • Fletcher, C.D.1
  • 18
    • 34250680520 scopus 로고    scopus 로고
    • Gene expression analysis of soft tissue sarcomas: Characterization and reclassification of malignant fibrous histiocytoma
    • Nakayama R, Nemoto T, Takahashi H, Ohta T, Kawai A, et al. (2007) Gene expression analysis of soft tissue sarcomas: characterization and reclassification of malignant fibrous histiocytoma. Mod Pathol 20: 749-759.
    • (2007) Mod Pathol , vol.20 , pp. 749-759
    • Nakayama, R.1    Nemoto, T.2    Takahashi, H.3    Ohta, T.4    Kawai, A.5
  • 19
    • 0037070754 scopus 로고    scopus 로고
    • Molecular characterisation of soft tissue tumours: A gene expression study
    • Nielsen TO, West RB, Linn SC, Alter O, Knowling MA, et al. (2002) Molecular characterisation of soft tissue tumours: a gene expression study. Lancet 359: 1301-1307.
    • (2002) Lancet , vol.359 , pp. 1301-1307
    • Nielsen, T.O.1    West, R.B.2    Linn, S.C.3    Alter, O.4    Knowling, M.A.5
  • 20
    • 33644688970 scopus 로고    scopus 로고
    • Roadmap for developing and validating therapeutically relevant genomic classifiers
    • Simon R (2005) Roadmap for developing and validating therapeutically relevant genomic classifiers. J Clin Oncol 23: 7332-7341.
    • (2005) J Clin Oncol , vol.23 , pp. 7332-7341
    • Simon, R.1
  • 21
    • 33744957443 scopus 로고    scopus 로고
    • Microarray analysis and tumor classification
    • Quackenbush J (2006) Microarray analysis and tumor classification.N Engl JMed 354: 2463-2472.
    • (2006) N Engl JMed , vol.354 , pp. 2463-2472
    • Quackenbush, J.1
  • 22
    • 21344445924 scopus 로고    scopus 로고
    • Analysis of hypoxia-related gene expression in sarcomas and effect of hypoxia on RNA interference of vascular endothelial cell growth factor A
    • Detwiller KY, Fernando NT, Segal NH, Ryeom SW, D'Amore PA, et al. (2005) Analysis of hypoxia-related gene expression in sarcomas and effect of hypoxia on RNA interference of vascular endothelial cell growth factor A. Cancer Res 65: 5881-5889.
    • (2005) Cancer Res , vol.65 , pp. 5881-5889
    • Detwiller, K.Y.1    Fernando, N.T.2    Segal, N.H.3    Ryeom, S.W.4    D'amore, P.A.5
  • 23
    • 43349088787 scopus 로고    scopus 로고
    • Targeting the type 1 insulin-like growth factor receptor as a treatment for cancer
    • Yuen JS, Macaulay VM (2008) Targeting the type 1 insulin-like growth factor receptor as a treatment for cancer. Expert Opin Ther Targets 12: 589-603.
    • (2008) Expert Opin Ther Targets , vol.12 , pp. 589-603
    • Yuen, J.S.1    MacAulay, V.M.2
  • 24
    • 3142514559 scopus 로고    scopus 로고
    • Targeting other abnormal signaling pathways in sarcoma: EGFR in synovial sarcomas, PPARgamma in liposarcomas
    • Blay JY, Ray-Coquard I, Alberti L, Ranchere D (2004) Targeting other abnormal signaling pathways in sarcoma: EGFR in synovial sarcomas, PPARgamma in liposarcomas. Cancer Treat Res 120: 151-167.
    • (2004) Cancer Treat Res , vol.120 , pp. 151-167
    • Blay, J.Y.1    Ray-Coquard, I.2    Alberti, L.3    Ranchere, D.4
  • 25
    • 39049102137 scopus 로고    scopus 로고
    • Nerve growth factor is a potential therapeutic target in breast cancer
    • Adriaenssens E, Vanhecke E, Saule P, Mougel A, Page A, et al. (2008) Nerve growth factor is a potential therapeutic target in breast cancer. Cancer Res 68: 346-351.
    • (2008) Cancer Res , vol.68 , pp. 346-351
    • Adriaenssens, E.1    Vanhecke, E.2    Saule, P.3    Mougel, A.4    Page, A.5
  • 26
    • 24344461320 scopus 로고    scopus 로고
    • Targeting the extracellular domain of fibroblast growth factor receptor 3 with human single-chain Fv antibodies inhibits bladder carcinoma cell line proliferation
    • Martinez-Torrecuadrada J, Cifuentes G, Lopez-Serra P, Saenz P, Martinez A, et al. (2005) Targeting the extracellular domain of fibroblast growth factor receptor 3 with human single-chain Fv antibodies inhibits bladder carcinoma cell line proliferation. Clin Cancer Res 11: 6280-6290.
    • (2005) Clin Cancer Res , vol.11 , pp. 6280-6290
    • Martinez-Torrecuadrada, J.1    Cifuentes, G.2    Lopez-Serra, P.3    Saenz, P.4    Martinez, A.5
  • 27
    • 0035876106 scopus 로고    scopus 로고
    • Clinicopathologic re-evaluation of 100 malignant fibrous histiocytomas: Prognostic relevance of subclassification
    • Fletcher CD, Gustafson P, Rydholm A, Willen H, Akerman M (2001) Clinicopathologic re-evaluation of 100 malignant fibrous histiocytomas: prognostic relevance of subclassification. J Clin Oncol 19: 3045-3050.
    • (2001) J Clin Oncol , vol.19 , pp. 3045-3050
    • Fletcher, C.D.1    Gustafson, P.2    Rydholm, A.3    Willen, H.4    Akerman, M.5
  • 28
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V (2004) The functions of animal microRNAs. Nature 431: 350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 30
    • 33747876113 scopus 로고    scopus 로고
    • MicroRNA-cancer connection: The beginning of a new tale
    • Calin GA, Croce CM (2006) MicroRNA-cancer connection: the beginning of a new tale. Cancer Res 66: 7390-7394.
    • (2006) Cancer Res , vol.66 , pp. 7390-7394
    • Calin, G.A.1    Croce, C.M.2
  • 32
    • 7244245443 scopus 로고    scopus 로고
    • Quantitative gene expression profiling in formalin-fixed, paraffin-embedded tissues using universal bead arrays
    • Bibikova M, Talantov D, Chudin E, Yeakley JM, Chen J, et al. (2004) Quantitative gene expression profiling in formalin-fixed, paraffin-embedded tissues using universal bead arrays. Am J Pathol 165: 1799-1807.
    • (2004) Am J Pathol , vol.165 , pp. 1799-1807
    • Bibikova, M.1    Talantov, D.2    Chudin, E.3    Yeakley, J.M.4    Chen, J.5
  • 33
    • 84934435242 scopus 로고    scopus 로고
    • Quantitative expression profiling of RNA from formalin-fixed, paraffin-embedded tissues using randomly assembled bead arrays
    • Bibikova M, Yeakley JM, Wang-Rodriguez J, Fan JB (2008) Quantitative expression profiling of RNA from formalin-fixed, paraffin-embedded tissues using randomly assembled bead arrays. Methods Mol Biol 439: 159-177.
    • (2008) Methods Mol Biol , vol.439 , pp. 159-177
    • Bibikova, M.1    Yeakley, J.M.2    Wang-Rodriguez, J.3    Fan, J.B.4
  • 34
    • 27944493276 scopus 로고    scopus 로고
    • Classification of microarrays to nearest centroids
    • Dabney AR (2005) Classification of microarrays to nearest centroids. Bioinformatics 21: 4148-4154.
    • (2005) Bioinformatics , vol.21 , pp. 4148-4154
    • Dabney, A.R.1
  • 35
    • 41549151596 scopus 로고    scopus 로고
    • Optimality driven nearest centroid classification from genomic data
    • Dabney AR, Storey JD (2007) Optimality driven nearest centroid classification from genomic data. PLoS ONE 2: e1002.
    • (2007) PLoS ONE , pp. 2
    • Dabney, A.R.1    Storey, J.D.2
  • 36
    • 33845432928 scopus 로고    scopus 로고
    • Adjusting batch effects in microarray expression data using empirical Bayes methods
    • Johnson WE, Li C, Rabinovic A (2007) Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics 8: 118-127.
    • (2007) Biostatistics , vol.8 , pp. 118-127
    • Johnson, W.E.1    Li, C.2    Rabinovic, A.3
  • 38
    • 31144459985 scopus 로고    scopus 로고
    • Oncogenic pathway signatures in human cancers as a guide to targeted therapies
    • Bild AH, Yao G, Chang JT, Wang Q, Potti A, et al. (2006) Oncogenic pathway signatures in human cancers as a guide to targeted therapies. Nature 439: 353-357.
    • (2006) Nature , vol.439 , pp. 353-357
    • Bild, A.H.1    Yao, G.2    Chang, J.T.3    Wang, Q.4    Potti, A.5
  • 39
    • 33750727368 scopus 로고    scopus 로고
    • Genomic signatures to guide the use of chemotherapeutics
    • Potti A, Dressman HK, Bild A, Riedel RF, Chan G, et al. (2006) Genomic signatures to guide the use of chemotherapeutics. Nat Med 12: 1294-1300.
    • (2006) Nat Med , vol.12 , pp. 1294-1300
    • Potti, A.1    Dressman, H.K.2    Bild, A.3    Riedel, R.F.4    Chan, G.5
  • 40
    • 41649092988 scopus 로고    scopus 로고
    • Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer
    • Acharya CR, Hsu DS, Anders CK, Anguiano A, Salter KH, et al. (2008) Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer. JAMA 299: 1574-1587.
    • (2008) JAMA , vol.299 , pp. 1574-1587
    • Acharya, C.R.1    Hsu, D.S.2    Anders, C.K.3    Anguiano, A.4    Salter, K.H.5
  • 41
    • 33947512381 scopus 로고    scopus 로고
    • An integrated genomic-based approach to individualized treatment of patients with advancedstage ovarian cancer
    • Dressman HK, Berchuck A, Chan G, Zhai J, Bild A, et al. (2007) An integrated genomic-based approach to individualized treatment of patients with advancedstage ovarian cancer. J Clin Oncol 25: 517-525.
    • (2007) J Clin Oncol , vol.25 , pp. 517-525
    • Dressman, H.K.1    Berchuck, A.2    Chan, G.3    Zhai, J.4    Bild, A.5
  • 42
    • 3142673366 scopus 로고    scopus 로고
    • Using the gene ontology for microarray data mining: A comparison of methods and application to age effects in human prefrontal cortex
    • Pavlidis P, Qin J, Arango V, Mann JJ, Sibille E (2004) Using the gene ontology for microarray data mining: a comparison of methods and application to age effects in human prefrontal cortex. Neurochem Res 29: 1213-1222.
    • (2004) Neurochem Res , vol.29 , pp. 1213-1222
    • Pavlidis, P.1    Qin, J.2    Arango, V.3    Mann, J.J.4    Sibille, E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.