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Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors
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A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling
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Blagoev B, Kratchmarova I, Ong S-E, Nielsen M, Foster LJ, Mann M. 2003. A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling. Nat Biotechnol 21: 315-318.
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Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
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Blagoev B, Ong S-E, Kratchmarova I, Mann M. 2004. Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nat Biotechnol 22: 1139-1145.
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Unbiased RNA-protein interaction screen by quantitative proteomics
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Butter F, Scheibe M, Mörl M, Mann M. 2009. Unbiased RNA-protein interaction screen by quantitative proteomics. Proc Natl Acad Sci 106: 10626-10631.
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Blue silver: A very sensitive colloidal Coomassie G-250 staining for proteome analysis
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Candiano G, Bruschi M, Musante L, Santucci L, Ghiggeri GM, Carnemolla B, Orecchia P, Zardi L, Righetti P. 2004. Blue silver: A very sensitive colloidal Coomassie G-250 staining for proteome analysis. Electrophoresis 25: 1327-1333.
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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
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Cox J, Mann M. 2008. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol 26: 1367-1372.
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Mass spectrometry and protein analysis
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Domon B, Aebersold R. 2006. Mass spectrometry and protein analysis. Science 312: 212-217.
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A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements
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Mittler G, Butter F, Mann M. 2009. A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements. Genome Res 19: 284-293.
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Genome Res
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MSQuant, an open source platform for mass spectrometry-based quantitative proteomics
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Mortensen P, Gouw JW, Olsen JV, Ong S-E, Rigbolt KTG, Bunkenborg J, Cox J, Foster LJ, Heck AJR, Blagoev B, et al. 2009. MSQuant, an open source platform for mass spectrometry-based quantitative proteomics. J Proteome Res doi: 10.1021/pr900721e.
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Quantitative chemical proteomics for identifying candidate drug targets
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Oda Y, Owa T, Sato T, Boucher B, Daniels S, Yamanaka H, Shinohara Y, Yokoi A, Kuromitsu J, Nagasu T. 2003. Quantitative chemical proteomics for identifying candidate drug targets. Anal Chem 75: 2159-2165.
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Mass spectrometry-based proteomics turns quantitative
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Ong S-E, Mann M. 2005. Mass spectrometry-based proteomics turns quantitative. Nat Chem Biol 1: 252-262.
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A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)
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Ong S-E, Mann M. 2006. A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nature Protoc 1: 2650-2660.
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Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
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Ong S-E, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, Mann M. 2002. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1: 376-386.
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Identifying and quantifying in vivo methylation sites by heavy methyl SILAC
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Ong S-E, Mittler G, Mann M. 2004. Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. Nat Methods 1: 119-126.
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Identifying the proteins to which small-molecule probes and drugs bind in cells
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Ong S-E, Schenone M, Margolin AA, Li X, Do K, Doud MK, Mani DR, Kuai L, Wang X, Wood JL, et al. 2009. Identifying the proteins to which small-molecule probes and drugs bind in cells. Proc Natl Acad Sci 106: 4617-4622.
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The study of macromolecular complexes by quantitative proteomics
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Ranish JA, Yi EC, Leslie DM, Purvine SO, Goodlett DR, Eng J, Aebersold R. 2003. The study of macromolecular complexes by quantitative proteomics. Nat Genet 33: 349-355.
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Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
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Rappsilber J, Mann M, Ishihama Y. 2007. Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips. Nat Protoc 2: 1896-1906.
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A novel proteomic screen for peptide-protein interactions
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Schulze WX, Mann M. 2004. A novel proteomic screen for peptide-protein interactions. J Biol Chem 279: 10756-10764.
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In-gel digestion for mass spectrometric characterization of proteins and proteomes
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Shevchenko A, Tomas H, Havlis J, Olsen JV, Mann M. 2007. In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat Protoc 1: 2856-2860.
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