Subunits fold at position-dependent rates during maturation of a eukaryotic RNA virus

Proceedings of the National Academy of Sciences of the United States of America

Volumn 107, Issue 32, 2010, Pages 14111-14115

  Matsui, Tsutomu ^a   Lander, Gabriel C ^a,b   Khayat, Reza ^a   Johnson, John E ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Protein folding; Quasi equivalence; Single particle reconstruction; Time resolved; Virus maturation

Indexed keywords

ARTICLE; CATALYSIS; CONFORMATIONAL TRANSITION; ELECTRON MICROSCOPY; EUKARYOTE; IN VITRO STUDY; IN VIVO STUDY; MATURATION; NONHUMAN; PH; PRIORITY JOURNAL; PROTEIN FOLDING; RNA VIRUS; VIRUS CAPSID; X RAY; CRYOELECTRON MICROSCOPY; KINETICS; PARTICLE SIZE; PHYSIOLOGY; VIROLOGY; VIRUS ASSEMBLY;

CAPSID; CRYOELECTRON MICROSCOPY; EUKARYOTA; KINETICS; PARTICLE SIZE; RNA VIRUSES; VIRUS ASSEMBLY;

EUKARYOTA; MIRIDAE; NUDAURELIA CAPENSIS OMEGA VIRUS; RNA VIRUSES;

EID: 77956269342     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1004221107     Document Type: Article

References (23)

1. Kielian M (2006) Class II virus membrane fusion proteins. Virology 344(1):38-47.
2. Li L, et al. (2008) The flavivirus precursor membrane-envelope protein complex: Structure and maturation. Science 319(5871):1830-1834.
3. Skehel JJ, Wiley DC (2000) Receptor binding and membrane fusion in virus entry: The influenza hemagglutinin. Annu Rev Biochem 69:531-569.
4. Banerjee M, Johnson JE (2008) Activation, exposure and penetration of virally encoded, membrane-active polypeptides during non-enveloped virus entry. Curr Protein Pept Sci 9(1):16-27.
5. Tsai B (2007) Penetration of nonenveloped viruses into the cytoplasm. Annu Rev Cell Dev Biol 23:23-43.
6. Canady MA, Tihova M, Hanzlik TN, Johnson JE, Yeager M (2000) Large conformational changes in the maturation of a simple RNA virus, nudaurelia capensis omega virus (NomegaV). J Mol Biol 299(3):573-584.
7. Matsui T, Lander G, Johnson JE (2009) Characterization of large conformational changes and autoproteolysis in the maturation of a T = 4 virus capsid. J Virol 83(2):1126-1134.
8. Taylor DJ, Johnson JE (2005) Folding and particle assembly are disrupted by single-point mutations near the autocatalytic cleavage site of Nudaurelia capensis omega virus capsid protein. Protein Sci 14(2):401-408.
9. Taylor DJ, Krishna NK, Canady MA, Schneemann A, Johnson JE (2002) Large-scale, pH-dependent, quaternary structure changes in an RNA virus capsid are reversible in the absence of subunit autoproteolysis. J Virol 76(19):9972-9980. (Pubitemid 35006535)
10. Caspar DL, Klug A (1962) Physical principles in the construction of regular viruses. Cold Spring Harb Sym 27:1-24.
11. Helgstrand C, Munshi S, Johnson JE, Liljas L (2004) The refined structure of Nudaurelia capensis omega virus reveals control elements for a T = 4 capsid maturation. Virology 318(1):192-203.
12. Munshi S, et al. (1996) The 2.8 A structure of a T = 4 animal virus and its implications for membrane translocation of RNA. J Mol Biol 261(1):1-10.
13. Walukiewicz HE, Banerjee M, Schneemann A, Johnson JE (2008) Rescue of maturation-defective flock house virus infectivity with noninfectious, mature, viruslike particles. J Virol 82(4):2025-2027. (Pubitemid 351206947)
14. Matsui T, Tsuruta H, Johnson JE (2010) Balanced electrostatic and structural forces guide the large conformational change associated with maturation of T = 4 virus. Biophys J 98(7):1337-1343.
15. Tang J, et al. (2009) Dynamics and stability in maturation of a t = 4 virus. J Mol Biol 392(3):803-812.
16. Canady MA, Tsuruta H, Johnson JE (2001) Analysis of rapid, large-scale protein quaternary structural changes: Time-resolved X-ray solution scattering of Nudaurelia capensis omega virus (NomegaV) maturation. J Mol Biol 311(4):803-814.
17. Carragher B, et al. (2000) Leginon: An automated system for acquisition of images from vitreous ice specimens. J Struct Biol 132(1):33-45.
18. Mallick SP, Carragher B, Potter CS, Kriegman DJ (2005) ACE: Automated CTF estimation. Ultramicroscopy 104(1):8-29.
19. Ludtke SJ, Baldwin PR, Chiu W (1999) EMAN: Semiautomated software for high-resolution single-particle reconstructions. J Struct Biol 128(1):82-97.
20. Zhu Y, Carragher B, Mouche F, Potter CS (2003) Automatic particle detection through efficient Hough transforms. IEEE T Med Imaging 22(9):1053-1062.
21. Lander GC, et al. (2009) Appion: An integrated, database-driven pipeline to facilitate EM image processing. J Struct Biol 166(1):95-102.
22. Frank J, et al. (1996) SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields. J Struct Biol 116(1):190-199. (Pubitemid 26093143)
23. Pettersen EF, et al. (2004) UCSF Chimera - A visualization system for exploratory research and analysis. J Comput Chem 25(13):1605-1612.