Lack of genetic structure in the jellyfish Pelagia noctiluca (Cnidaria: Scyphozoa: Semaeostomeae) across European seas

Molecular Phylogenetics and Evolution

Volumn 57, Issue 1, 2010, Pages 417-428

  Stopar, Katja ^a   Ramšak, Andreja ^a   Trontelj, Peter ^b   Malej, Alenka ^a  

^a NATIONAL INSTITUTE OF BIOLOGY   (Slovenia)

^b UNIVERSITY OF LJUBLJANA   (Slovenia)

Author keywords

COI; ITS; Mediterranean; North Atlantic; Pelagia noctiluca; Phylogeography

Indexed keywords

MITOCHONDRIAL DNA; RIBOSOMAL SPACER DNA;

ANIMAL; ARTICLE; ATLANTIC OCEAN; CLASSIFICATION; CNIDARIA; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HAPLOTYPE; MEDITERRANEAN SEA; PHYLOGENY; PHYLOGEOGRAPHY; POPULATION GENETICS;

ANIMALS; ATLANTIC OCEAN; CNIDARIA; DNA, MITOCHONDRIAL; DNA, RIBOSOMAL SPACER; GENETIC VARIATION; GENETICS, POPULATION; GEOGRAPHY; HAPLOTYPES; MEDITERRANEAN SEA; PHYLOGENY; PHYLOGEOGRAPHY; SEQUENCE ANALYSIS, DNA;

CNIDARIA; COELENTERATA; HYDROIDA; PELAGIA NOCTILUCA; SCYPHOZOA; SEMAEOSTOMEAE;

EID: 77956226701     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2010.07.004     Document Type: Article

References (76)

1. Akaike H. Information theory as an extension of the maximum-likelihood principle. Second International Symposium on Information Theory 1973, 267-281. Akademiai Kiado, Budapest. B.N. Petrov, F. Csaki (Eds.).
2. Arai M.N. A Functional Biology of Scyphozoa 1997, Chapman & Hall, London.
3. Bargelloni L., Alarcon J.A., Alvarez M.C., Penzo E., Magoulas A., Reis C., Patarnello T. Discord in the family Sparidae (Teleostei): divergent phylogeographical patterns across the Atlantic-Mediterranean divide. J. Evol. Biol. 2003, 16:1149-1158.
4. Borsa P., Naciri M., Bahri L., Chikhi L., García de León F.J., Kotoulas G., Bonhomme F. Intraspecific zoogeography of the Mediterranean: population genetic analysis on sixteen atlanto-mediterranean species (fish and invertebrates). Vie Milieu 1997, 47:295-305.
5. Baxter E.J., Walne A.W., Purcell J.E., McAllen R., Doyle T.K. Identification of jellyfish from Continuous Plankton Recorder samples. Hydrobiologia 2010, 645:193-201.
6. Bowen B.W., Grant W.S. Phylogeography of the sardines (Sardinops spp.): assessing biogeographic models and population histories in temperate upwelling zones. Evolution 1997, 51:1601-1610.
7. Bulmer M. The selection-mutation-drift theory of synonymous codon usage. Genetics 1991, 129:897-907.
8. Burton R.S. Intraspecific phylogeography across the Point Conception biogeographic boundary. Evolution 1998, 52:734-745.
9. Clement M., Posada D., Crandall K.A. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 2000, 9:1657-1659.
10. Cowen R.K., Lwiza K.M.M., Sponaugle S., Paris C.B., Olson D.B. Connectivity of marine populations: open or closed?. Science 2000, 287:857-859.
11. Daly Yahia M.N., Batistic M., Lucic D., Fernández de Puelles M., Licandro P., Malej A., Molinero J.C., Siokou-Frangou I., Zervoudaki S., Prieto L., Goy J., Yahia-Kéfi O. Are the outbreaks of Pelagia noctiluca (Forsskål, 1775) more frequent in the Mediterranean basin?. ICES Coop. Rep. 2010, 300:8-14.
12. Dawson M.N., Jacobs D.K. Molecular evidence for cryptic species of Aurelia aurita (Cnidaria, Scyphozoa). Biol. Bull. 2001, 200:92-96.
13. Dawson M.N. Macro-morphological variation among cryptic species of the moon jellyfish, Aurelia (Cnidaria: Scyphozoa). Mar. Biol. 2003, 143:369-379.
14. Dawson M.N. Incipient speciation of Catostylus mosaicus (Syphozoa, Rhizostomeae, Catostylidae), comparative phylogeography and biogeography in south-east Australia. J. Biogeogr. 2005, 32:515-533.
15. Debes P.V., Zachos F.E., Hanel R. Mitochondrial phylogeography of the European sprat (Sprattus sprattus L., Clupeidae) reveals isolated climatically vulnerable populations in the Mediterranean Sea and range expansion in the northeast Atlantic. Mol. Ecol. 2008, 17:3873-3888.
16. Demirov E., Pinardi N. Simulation of the Mediterranean Sea circulation from 1979 to 1993: Part I. The interannual variability. J. Mar. Syst. 2002, 33(34):23-50.
17. D'Ortezio F., Ribera d'Alcalà M. On the trophic regimes of the Mediterranean Sea: a satellite analysis. Biogeosciences 2009, 6:139-148.
18. Doyle T.K., De Haas H., Cotton D., Dorschel B., Cummins V., Houghton J.D.R., Davenport J., Hays G.C. Widespread occurrence of the jellyfish Pelagia noctiluca in Irish coastal and shelf waters. J. Plankton Res. 2008, 30:963-968.
19. Dupanloup I., Schneider S., Excoffier L. A simulated annealing approach to define the genetic structure of populations. Mol. Ecol. 2002, 11:2571-2581.
20. Excoffier L., Smouse P.E., Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to mitochondrial restriction data. Genetics 1992, 131:479-491.
21. Folmer O., Black M., Hoeh W., Lutz R., Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase I subunit from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 1994, 3:294-299.
22. Franqueville C. Etude comparative de macroplancton en Méditerranée nord-occidentale par plongées en soucoupe SP 350, et pêches au chalut pélagique. Mar. Biol. 1970, 5:172-179.
23. Fu Y.X. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 1997, 147:915-925.
24. Goy J., Dalot S., Morand P. Long term fluctuations of Pelagia noctiluca (Cnidaria, Scyphomedusae) in the western Mediterranean Sea. Deep Sea Res. 1989, 36:269-279.
25. Hewitt G. The genetic legacy of the Quaternary ice ages. Nature 2000, 405:907-913.
26. Holland B.S., Dawson M.N., Crow G.L., Hofmann D.K. Global phylogeography of Cassiopea (Scyphozoa: Rhizostomeae): molecular evidence for cryptic species and multiple invasions of the Hawaiian Islands. Mar. Biol. 2004, 145:1119-1128.
27. Huang D., Meier R., Todd P.A., Chou L.M. Slow mitochondrial COI sequence evolution at the base of the metazoan tree and its implications for DNA barcoding. J. Mol. Evol. 2008, 66:167-174.
28. Katoh K., Kuma K., Toh H., Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 2005, 33:511-518.
29. Kawecki T. Ecological and evolutionary consequences of source-sink population dynamics. Ecology, Genetics, and Evolution of Metapopulations 2004, 387-414. Elsevier Academic Press, Amsterdam. I. Hanski, O.E. Gaggiotti (Eds.).
30. Keane T.M., Creevey C.J., Pentony M.M., Naughton T.J., McInerney O.J. Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are justified. BMC Evol. Biol. 2006, 6:29. doi:10.1186/1471-2148-6-29.
31. Kimura M., Weiss G.H. The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics 1964, 49:561-576.
32. Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
33. Kimura M. The Neutral Theory of Molecular Evolution 1983, Cambridge University Press, Cambridge.
34. Kogovšek T., Bogunović B., Malej A. Recurrence of bloom-forming scyphomedusae: wavelet analysis of a 200 year time series. Hydrobiologia 2009, 217:81-96.
35. Krijgsman W., Hilgen F.J., Raffi I., Sierro F.J., Wilson D.S. Chronology, causes and progression of the Messinian salinity crisis. Nature 1999, 400:652-655.
36. Larson R.J. A note on the feeding, growth, and reproduction of the epipelagic Scyphomedusa Pelagia noctiluca (Forsskål). Biol. Oceanogr. 1987, 4:447-454.
37. Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
38. Licandro P., Conway D.V.P., Daly Yahia M.N., Fernandez de Puelles M.L., Gasparini S., Hecq J.H., Tranter P., Kirby R.R. A blooming jellyfish in the northeast Atlantic and Mediterranean. Biol. Lett. 2010, 10.1098/rsbl.2010.0150.
39. Luttikhuizen P.C., Campos J., van Bleijskwijk J., Peijnenburg K.T.C.A., van der Veer H.W. Phylogeography of the common shrimp, Crangon crangon (L.) across its distribution range. Mol. Phylogenet. Evol. 2008, 46:1015-1030.
40. Malej A., Malej M. Population dynamics of the jellyfish Pelagia noctiluca (Forskål, 1775). Marine Eutrophication and Population Dynamics. Proceedings of the 25th EMBS 1992, 215-219. Olsen & Olsen, Fredensborg. G. Colombo, I. Ferrara (Eds.).
41. Malej A., Faganeli J., Pezdič J. Stable isotope and biochemical fractionation in the marine pelagic food chain: the jellyfish Pelagia noctiluca and net zooplankton. Mar. Biol. 1993, 116:565-570.
42. Malej A., Malej A. Invasion of Jellyfish Pelagia noctiluca in the Northern Adriatic: a non-success story. Aquatic Invasions in the Black, Caspian, and Mediterranean Seas. NATO ASI Series 5 2004, vol. 35:273-285. Kluwer Academic Publisher, Dordrecht.
43. Mariottini G.L., Giacco E., Pane L. The mauve stinger Pelagia noctiluca (Forsskål, 1775). Distribution, ecology, toxicity and epidemiology of stings. Mar. Drugs 2008, 6:496-513.
44. Maruyama T., Fuerst P.A. Population bottlenecks and nonequilibrium models in population genetics. I. Allele numbers when populations evolve from zero variability. Genetics 1984, 108:745-763.
45. Mayer A.G. Medusae of the World III: the Scyphomedusae 1910, Carnegie Institution of Washington, Washington DC.
46. McVean G.A.T., Vieira J. Inferring parameters of mutation, selection, and demography from patterns of synonymous site evolution in Drosophila. Genetics 2001, 157:245-257.
47. Millot C. Circulation in the Western Mediterranean Sea. J. Mar. Syst. 1999, 20:423-442.
48. Molinero J.C., Casini M., Buecher E. The influence of the Atlantic and regional climate variability on the long-term changes in gelatinous carnivore populations in the northwestern Mediterranean. Limnol. Oceanogr. 2008, 53:1456-1467.
49. Neethling M., Matthee C.A., Bowie R.C.K., von der Heyden S. Evidence for panmixia despite barriers to gene flow in the southern African endemic, Caffrogobius caffer (Teleostei: Gobiidae). BMC Evol. Biol. 2008, 8:325. 10.1186/1471-2148-8-325.
50. Nei M.T., Maruyama T., Chakraborty R. The bottleneck effect and genetic variability in populations. Evolution 1975, 29:1-10.
51. Novembre J.A. Accounting for background nucleotide composition when measuring codon usage bias. Mol. Biol. Evol. 2002, 19:1390-1394.
52. Palumbi S.R. Genetic divergence, reproductive isolation, and marine speciation. Annu. Rev. Ecol. Syst. 1994, 25:547-572.
53. Patarnello T., Volckaert F.A.M.J., Castilho R. Pillars of Hercules: is the Atlantic-Mediterranean transition a phylogeographical break?. Mol. Ecol. 2007, 16:4426-4444.
54. Peijnenburg K.T.C.A., Breeuwer J.A.J., Pierrot-Bults A.C., Menken S.B.J. Phylogeography of the planktonic chaetognath Sagitta setosa reveals isolation in European Seas. Evolution 2004, 58:1472-1487.
55. Pfenninger M., Posada D. Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): fragmentation, corridor migration, and secondary contact. Evolution 2002, 56:1776-1788.
56. Pingree R.D. Ocean structure and climate (Eastern North Atlantic): in situ measurements and remote sensing (altimeter). J. Mar. Biol. Assoc. UK 2002, 82:681-707.
57. Posada D., Crandall K.A. Intraspecific gene genealogies: trees grafting into networks. Trends Ecol. Evol. 2001, 16:35-47.
58. Purcell, J.E., Malej, A., Benović, A., 1999. Potential links of jellyfish to eutrophication and fisheries. In: Malone, T.C., Malej, A., Harding, L.W., Smodlaka, N., Turner, R.E. (Eds.), Ecosystems at the Land-Sea Margin: Drainage Basin to Coastal Sea. Coastal and Estuarine Studies, vol. 55. pp. 241-263.
59. Purcell J.E., Uye S.I., Lo W.T. Antropogenic causes of jellyfish blooms and their direct consequences for humans: a review. Mar. Ecol. Prog. Ser. 2007, 350:153-174.
60. Rambaut, A., Drummond, A.J., 2004. Tracer v1.3. Available from: http://evolve.zoo.ox.ac.uk/software.html.
61. Rambaut A. FigTree: Tree Figure Drawing Tool, Version 1.2.2 2006, Institute of Evolutionary Biology, University of Edinburgh.
62. Ramos-Onsins S., Rozas J. Statistical properties of new neutrality tests against population growth. Mol. Biol. Evol. 2002, 9:552-569.
63. Rogers A.R., Harpending H. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 1992, 9:552-569.
64. Ronquist F., Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
65. Rottini Sandrini L., Avian M. Reproduction of Pelagia noctiluca in the central and northern Adriatic. Hydrobiologia 1991, 216(217):197-202.
66. Rottini Sandrini L., Avian M., Axiak V., Malej A. The breeding period of Pelagia noctiluca (Scyphozoa, Semaeostomeae) in the Adriatic and central Mediterranean Sea. Nova Thalassia 1984, 6:65-75.
67. Russell F.S. The Medusae of the British Isles: II. Pelagic Scyphozoa with a supplement to the first volume on Hydromedusae 1970, Cambridge University Press, London.
68. Sabatés A., Pages F., Atienza D., Fuentes V., Purcell J.E., Gili J.M. Planktonic cnidarian distribution and feeding of Pelagia noctiluca in the NW Mediterranean Sea. Hydrobiologia 2010, 645:153-165.
69. Schroth W., Jarms G., Streit B., Schierwater B. Speciation and phylogeography in the cosmopolitan marine moon jelly, Aurelia sp. BMC Evol. Biol. 2002, 2:1-10.
70. Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 1989, 123:585-595.
71. Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 1993, 10:512-526.
72. Thiede J. A glacial Mediterranean. Nature 1978, 276:680-683.
73. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
74. UNEP, 1991. Jellyfish Blooms in the Mediterranean. In: Proceedings of the II Workshop on Jellyfish in the Mediterranean Sea. Mediterranean Action Plan Technical Reports Series 47.
75. Zavodnik, D., 1991. On the food and feeding in the northern Adriatic of Pelagia noctiluca (Scyphozoa). In: UNEP Jellyfish Blooms in the Mediterranean, Proceedings of the II Workshop of Jellyfish Blooms in the Mediterranean Sea, Mediterranean Action Plan Technical Reports Series, Athens 47, pp. 212-216.
76. White T.J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications 1990, 315-332. Academic Press, San Diego. M.A. Innis, G.H. Gelfand, J.J. Sninsky, T.J. White (Eds.).