New insights into diversity and evolution of deep-sea Mytilidae (Mollusca: Bivalvia)

Molecular Phylogenetics and Evolution

Volumn 57, Issue 1, 2010, Pages 71-83

  Lorion, Julien ^a   Buge, Barbara ^a   Cruaud, Corinne ^b   Samadi, Sarah ^a  

^a MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^b CENTRE NATIONAL DE SÉQUENÇAGE   (France)

Author keywords

Adipicola; Allopatry; Bathymodiolinae; Cold seep; Hydrothermal vent; Idas; Organic falls; Phylogenetics; South West Pacific; Taxon sampling

Indexed keywords

MITOCHONDRIAL DNA; RNA 28S; SEA WATER;

ANIMAL; ARTICLE; CLASSIFICATION; DNA SEQUENCE; ECOSYSTEM; GENETICS; GEOGRAPHY; MOLECULAR EVOLUTION; MYTILIDAE; PACIFIC OCEAN; PHYLOGENY; SPECIES DIFFERENTIATION;

ANIMALS; DNA, MITOCHONDRIAL; ECOSYSTEM; EVOLUTION, MOLECULAR; GENETIC SPECIATION; GEOGRAPHY; MYTILIDAE; PACIFIC OCEAN; PHYLOGENY; RNA, RIBOSOMAL, 28S; SEAWATER; SEQUENCE ANALYSIS, DNA;

ADIPICOLA; BATHYMODIOLINAE; BIVALVIA; IDAS; MOLLUSCA; MYTILIDAE;

EID: 77956226278     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2010.05.027     Document Type: Article

References (104)

1. Amano K., Little C.T.S., Inoue K. A new Miocene whale-fall community from Japan. Palaeogeogr. Palaeoclimatol. Palaeoecol. 2007, 247:236-242.
2. Baker A.M., Bartlett C., Bunn S.E., Goudkamp K., Sheldon F., Hughes J.M. Cryptic species and morphological plasticity in long-lived bivalves (Unionoida: Hyriidae) from inland Australia. Mol. Ecol. 2003, 12:2707-2717.
3. Barber P.H., Erdmann M.V., Palumbi S.R., Ayre D. Comparative phylogeography of three codistributed stomatopods: origin and timing of regional lineage diversification in the coral triangle. Evolution 2006, 60:1825-1839.
4. Benzie J.A.H. Genetic structure of marine organisms and SE Asian biogeography. Biogeography and Geological Evolution of SE Asia 1998, 197-209. Backhuis Publishers, Leiden. R. Hall, J.D. Holloway (Eds.).
5. Bierne N., Borsa P., Daguin C., Jollivet D., Viard F., Bonhomme F., David P. Introgression patterns in the mosaic hybrid zone between Mytilus edulis and M. galloprovincialis. Mol. Ecol. 2003, 12:447-461.
6. Blaxter M. Counting angels with DNA. Nature 2003, 421:122-124.
7. Blaxter M.L. The promise of a DNA taxonomy. Philos. Trans. R. Soc. B 2004, 359:669-679.
8. Bouchet P., Heros V., Lozouet P., Maestrati P. A quater-century of deep-sea malacological exploration in the South and West Pacific: WHERE do we stand? How far to go?. Mem. Mus. Natl. Hist. Nat. Ser. A (Paris) 2008, 25:9-40.
9. Cavanaugh C., McKiness Z., Newton I., Stewart F. Marine chemosynthetic symbioses. The Prokaryotes 2006, 475-507. Springer, New York. 10.1007/0-387-30741-9.
10. Cosel R. A new species of bathymodioline mussel (Mollusca, Bivalvia, Mytilidae) from Mauritania (West Africa), with comments on the genus Bathymodiolus Kenk & Wilson, 1985. Zoosystema 2002, 24:259-272.
11. Cosel R. A new bathymodioline mussel (Bivalvia: Mytiloidea: Mytilidae: Bathymodiolinae) from vent sites near Kueishan island, North East Taiwan. Raffles Bull. Zool. 2008, 19:105-114.
12. Crame J.A., Rosen B.R. Cenozoic palaeogeography and the rise of modern biodiversity patterns. Palaeogeography and Biodiversity Change: The Ordovician and Mesozoic-Cenozoic Radiations 2002, 153-168. Geological Society, London. J.A. Crame, A.W. Owen (Eds.).
13. De Queiroz K. Species concepts and species delimitation. Syst. Biol. 2007, 56:879-886.
14. Dean H.K. A population study of the bivalve Idas argenteus Jeffreys, 1876, (Bivalvia: Mytilidae) recovered from a submerged wood block in the deep North Atlantic Ocean. Malacologia 1993, 35:21-41.
15. Dell R.K. Mollusca of the family Mytilidae (Bivalvia) associated with organic remains from deep water off New Zealand, with revisions of the genera Adipicola Dautzenberg, 1927 and Idasola Iredale, 1915. Natl. Mus. New Zealand Rec. 1987, 3:17-36.
16. Distel D.L., Baco A.R., Chuang E., Morrill W., Cavanaugh C.M., Smith C.R. Do mussels take wooden steps to deep-sea vents?. Nature 2000, 403:725-726.
17. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:1-8.
18. Dubilier N., Bergin C., Lott C. Symbiotic diversity in marine animals: the art of harnessing chemosynthesis. Nat. Rev. Microbiol. 2008, 6:725-740.
19. Duperron S., Halary S., Lorion J., Sibuet M., Gaill F. Unexpected co-occurrence of six bacterial symbionts in the gills of the cold seep mussel Idas sp. (Bivalvia: Mytilidae). Environ. Microbiol. 2008, 10:433-445.
20. Duperron S., Laurent M.C.Z., Gaill F., Gros O. Sulphur-oxidizing extracellular bacteria in the gills of Mytilidae associated with wood falls. FEMS Microbiol. Ecol. 2008, 63:338-349.
21. Duperron S., Lorion J., Samadi S., Gros O., Gaill F. Symbioses between deep-sea mussels (Mytilidae: Bathymodiolinae) and chemosynthetic bacteria: diversity, function and evolution. C. R. Biol. 2009, 332:298-310.
22. Ezard, T., Fujisawa, T., Baraclough, T., 2009. SPecies LImits by Threshold Statistics. http://r-forge.r-project.org/projects/splits/.
23. Faure B., Jollivet D., Tanguy A., Bonhomme F., Bierne N. Speciation in the deep sea: multi-locus analysis of divergence and gene flow between two hybridizing species of hydrothermal vent mussels. Plos One 2009, 4:e6485. 10.1371/journal.pone.0006485.
24. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
25. Folmer O., Black M., Hoeh W.R., Lutz R.A., Vrijenhoek R.C. DNA primers for amplification of mitochondrial cytochrome C oxidase subunit I from metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 1994, 3:294-299.
26. Fontaneto D., Herniou E.A., Boschetti C., Caprioli M., Melone G., Ricci C., Barraclough T.G. Independently evolving species in asexual bdelloid rotifers. PLoS Biol. 2007, 5:e87.
27. Fujita Y., Matsumoto H., Fujiwara Y., Hashimoto J., Sergey V., Galkin S.V., Ueshima R., Miyazaki J.-I. Phylogenetic relationships of deep-sea Bathymodiolus mussels to their mytilid relatives from sunken whale carcasses and wood. Venus 2009, 64:123-134.
28. Gustafson R.G., Turner R.D., Lutz R.A., Vrijenhoek R.C. A new genus and five new species of mussels (Bivalvia, Mytilidae) from deep-sea sulfide/hydrocarbon seeps in the Gulf of Mexico. Malacologia 1998, 40:63-112.
29. Hall J. Cenozoic reconstructions of SE Asia and the SW Pacific: changing patterns of land and sea. Faunal and Floral Migrations and Evolution in SE Asia-Australasia 2001, 35-56. Swets & Zeitlinger, Lisse. I. Metcalfe, J.M.B. Smith, M. Morwood, I.D. Davidson (Eds.).
30. Hall R. The plate tectonics of Cenozoic SE Asia and the distribution of land and sea. Biogeography and Geological Evolution of SE Asia 1998, 99-131. Blackhuis Publishers, Leiden. R. Hall, J.D. Holloway (Eds.).
31. Hall R. Cenozoic geological and plate tectonic evolution of SE Asia and the SW Pacific: computer-based reconstructions, model and animations. J. Asian Earth Sci. 2002, 20:353-431.
32. Haq B.U., Schutter S.R. A chronology of Paleozoic sea-level changes. Science 2008, 322:64-68.
33. Hoeksema B. Delineation of the Indo-Malayan centre of maximum marine biodiversity: the Coral Triangle. Biogeography, Time, and Place: Distributions, Barriers, and Islands 2007, 117-178. Springer, Dordrecht. 10.1007/978-1-4020-6374-9. W. Renema (Ed.).
34. Hollander J., Collyer M.L., Adams D.C., Johannesson K. Phenotypic plasticity in two marine snails: constraints superseding life history. J. Evol. Biol. 2006, 19:1861-1872.
35. Horikoshi M., Tsuchida E. Distribution, mode of life and allometric growth of a deep-sea Mytilid bivalve, Adipicola longissima (Thiele et Jaeckel, 1931). Venus 1984, 43:86-100.
36. Hourdez S., Lallier F.H. Adaptations to hypoxia in hydrothermal-vent and cold-seep invertebrates. Rev. Environ. Sci. Bio/Technol. 2006, 6:143-159.
37. Imron, Jeffrey B., Hale P., Degnan B.M., Degnan S.M. Pleistocene isolation and recent gene flow in Haliotis asinina, an Indo-Pacific vetigastropod with limited dispersal capacity. Mol. Ecol. 2007, 16:289-304.
38. Iwasaki H., Kyuno A., Shintaku M., Fujita Y., Fujiwara Y., Fujikura K., Hashimoto J., Martins L., Gebruk A., Miyazaki J.-I. Evolutionary relationships of deep-sea mussels inferred by mitochondrial DNA sequences. Mar. Biol. 2006, 5:1-12.
39. Johnson S.B., Warén A., Vrijenhoek R.C. DNA barcoding of Lepetodrilus limpets reveals cryptic species. J. Shellfish Res. 2009, 27:43-51.
40. Jones W.J., Won Y.-J., Maas P.A.Y., Smith P.J., Lutz R.A., Vrijenhoek R.C. Evolution of habitat use by deep-sea mussels. Mar. Biol. 2006, 148:841-851.
41. Kiel S., Campbell K.A., Gaillard C. New and little known mollusks from ancient chemosynthetic environments. Zootaxa 2010, 2390:26-48.
42. Kiel S., Goedert J. Deep-sea food bonanzas: early Cenozoic whale-fall communities resemble wood-fall rather than seep communities. Proc. R. Soc. Lond. Ser. B 2006, 273:2625-2631.
43. Kiel S., Goedert J.L. A wood-fall association from late Eocene deep-water sediments of Washington state, USA. Palaios 2006, 21:548-556.
44. Kiel S., Goedert J.L. New mollusks associated with biogenic substrates in Cenozoic deep-water sediments of Washington State. Acta Palaeontol. Pol. 2007, 52:41-52.
45. Knowlton N. Molecular genetic analyses of species boundaries in the sea. Hydrobiologia 2000, 420:73-90.
46. Kyuno A., Shintaku M., Fujita Y., Matsumoto H., Utsumi M., Wanatabe H., Fujiwara Y., Miyazaki J.-I. Dispersal, differentiation of deep-sea mussels of the genus Bathymodiolus (Mytilidae, Bathymodiolinae). J. Mar. Biol. 2009, 72. 15pp. (Article ID 6256). 10.1155/2009/625672.
47. Lee T., Foighil D.O. Hidden Floridian biodiversity: mitochondrial and nuclear gene trees reveal four cryptic species within the scorched mussel, Brachidontes exustus, species complex. Mol. Ecol. 2004, 13:3527-3542.
48. Lewis P.O. A likelihood approach to estimating phylogeny from discrete morphological character data. Syst. Biol. 2001, 50:913-925.
49. Little C.T.S., Vrijenhoek R.C. Are hydrothermal vent animals living fossils?. Trends Ecol. Evol. 2003, 18:582-588.
50. Lonsdale P.F. Clustering of suspension-feeding macrobenthos near abyssal hydrothermal vents at oceanic spreading centers. Deep-Sea Res. Part II 1977, 24:857-858.
51. Lorion J., Duperron S., Gros O., Cruaud C., Samadi S. Several deep-sea mussels and their associated symbionts are able to live both on wood and on whale falls. Proc. R. Soc. Lond. Ser. B 2009, 276:177-185.
52. Lutz R.A., Jablonski D., Turner R.D. Larval development and dispersal at deep-sea hydrothermal vents. Science 1984, 226:1451-1454.
53. Macaranas J.M., Ablan C.A., Pante M.J.R., Benzie J.A.H., Williams S.T. Genetic structure of giant clam (Tridacna derasa) populations from reefs in the Indo-Pacific. Mar. Biol. 1992, 113:231-238.
54. Maddison, W.P., Maddison, D.R., 2009. Mesquite: A Modular System for Evolutionary Analysis. Version 2.7.
55. Magsino R., Juinio-Meñez M. The influence of contrasting life history traits and oceanic processes on genetic structuring of rabbitfish populations Siganus argenteus and Siganus fuscescens along the eastern Philippine coasts. Mar. Biol. 2008, 154:519-532.
56. McClain C.R. Seamounts: identity crisis or split personality?. J. Biogeography 2007, 34:2001-2008.
57. McMillan W.O., Palumbi S.R. Concordant evolutionary patterns among Indo-West Pacific butterflyfishes. Proc. R. Soc. Lond. Ser. B 1995, 260:229-236.
58. Meier R., Willman R. The Hennigian species concept. Species Concepts and Phylogenetic Theory 2000, 30-43. University Press, New York. W. Wheeler, R. Meier (Eds.).
59. Meyer C.P., Geller J.B., Paulay G. Fine scale endemism on coral reefs: archipelagic differentiation in turbinid gastropods. Evolution 2005, 59:113-125.
60. Miller K.G., Kominz M.A., Browning J.V., Wright J.D., Mountain G.S., Katz M.E., Sugarman P.J., Cramer B.S., Christie-Blick N., Pekar S.F. The Phanerozoic record of global sea-level change. Science 2005, 310:1293-1298.
61. Miyazaki J.-I., Shintaku M., Kyuno A., Fujiwara Y., Hashimoto J., Iwasaki H. Phylogenetic relationships of deep-sea mussels of the genus Bathymodiolus (Bivalvia: Mytilidae). Mar. Biol. 2004, 144:527-535. 10.1007/s00227-003-1208.
62. Monaghan M., Wild R., Elliot M., Fujisawa T., Balke M., Inward D.J.G., Lees D.C., Ranaivosolo R., Eggleton P., Barraclough T.G., Vogler A. Accelerated species inventory on Madagascar using coalescent-based models of species delineation. Syst. Biol. 2009, 58:298-311.
63. Moritz C. Defining ''evolutionary significant units'' for conservation. Trends Ecol. Evol. 1994, 9:373-375.
64. Newman W.A. The abyssal hydrothermal vent invertebrate fauna: a glimpse of antiquity?. Bull. Biol. Soc. Wash. 1985, 6:231-242.
65. Nichols R. Gene trees and species trees are not the same. Trends Ecol. Evol. 2001, 16:358-364.
66. Nielsen R., Wakeley J., Nielsen R., Slatkin M. Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 2001, 158:885-896.
67. Nylander, J.A.A., 2004. MrModeltest v2. Program Distributed by the Author. Evolutionary Biology Centre, Uppsala University, Uppsala.
68. O'Hara T.D. Seamounts: centres of endemism or species richness for ophiuroids?. Global Ecol. Biogeography 2007, 16:720-732.
69. Olu-Le Roy K., Cosel R.v., Hourdez S., Carney S.L., Jollivet D. Amphi-Atlantic cold-seep Bathymodiolus species complexes across the equatorial belt. Deep-Sea Res. Part I 2007, 54:1890-1911.
70. Palumbi S.R. Molecular biogeography of the Pacific. Coral Reefs 1997, 16:S47-S52.
71. Paulay G. Diversity and distribution of reef organisms. Life and Death of Coral Reefs 1997, International Thomson Publishing, New York. T. Chapman, J. Hall (Eds.).
72. Pfenninger M., Cordellier M., Streit B. Comparing the efficacy of morphologic and DNA-based taxonomy in the freshwater gastropod genus Radix (Basommatophora, Pulmonata). BMC Evol. Biol. 2006, 6:100.
73. Planes S., Fauvelot C. Isolation by distance and vicariance drive genetic stucture of a coral reef fish in the Pacific ocean. Evolution 2002, 56:378-399.
74. Plouviez S., Shank T.M., Faure B., Daguin-Thiebaut C., Viard F., Lallier F.H., Jollivet D. Comparative phylogeography among hydrothermal vent species along the East Pacific Rise reveals vicariant processes and population expansion in the South. Mol. Ecol. 2009, 18:3903-3917.
75. Pons J., Barraclough T., Gomez-Zurita J., Cardoso A., Duran D., Hazell S., Kamoun S., Sumlin W., Vogler A. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Syst. Biol. 2006, 55:595-609.
76. Qu L.H. Structuration et évolution de l'A.R.N ribosomique 28S chez les Eucaryotes: étude systématique de la région 5' terminale 1986, Paul Sabatier, Toulouse, p. 230.
77. Rambaut, A., Drummond, A.J., 2007. Tracer v1.4. http://tree.bio.ed.ac.uk/software/tracer/.
78. Samadi S., Barberousse A. Species: towards new, well-grounded practices. Biol. J. Linn. Soc. 2009, 97:217-222.
79. Samadi S., Bottan L., Macpherson E., Richer de Forges B., Boisselier M.-C. Seamount endemism questioned by the geographic distribution and population genetic structure of marine invertebrates. Mar. Biol. 2006, 149:1463-1475.
80. Samadi S., Quemere E., Lorion J., Tillier A., Cosel R., Lopez P., Cruaud C., Couloux A., Boisselier-Dubayle M.-C. Molecular phylogeny in mytilids supports the wooden steps to deep-sea vents hypothesis. C. R. Biol. 2007, 330:446-456.
81. Sibuet M., Olu K. Biogeography, biodiversity and fluid dependence of deep-sea cold-seep communities at active and passive margins. Deep-Sea Res. Part II 1998, 45:517-567.
82. Sites J.W., Marshall J.C. Operational criteria for delimiting species. Ann. Rev. Ecol. Evol. Syst. 2004, 35:199-227.
83. Smith C.R., Baco A.R. Ecology of whale falls at the deep-sea floor. Oceanography and Marine Biology: An Annual Review 2003, vol. 41:311-354. Taylor & Francis, London.
84. Smith P.J., McVeagh S.M., Won Y., Vrijenhoek R.C. Genetic heterogeneity among New Zealand species of hydrothermal vent mussels (Mytilidae: Bathymodiolus). Mar. Biol. 2004, 144:537-545.
85. Southward E.C. The morphology of bacterial symbioses in the gills of mussels of the genera Adipicola and Idas (Bivalvia: Mytilidae). J. Shellfish Res. 2008, 27:139-146.
86. Stamatakis A. RAxML-VI-HPC: maximum Likelihood phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
87. Stamatakis A., Hoover P., Rougemont J. A rapid bootstrap algorithm for the RAxML web-servers. Syst. Biol. 2008, 75:758-771.
88. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetic analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
89. Taylor J.W., Jacobson D.J., Kroken S., Kasuga T., Geiser D.M., Hibbett D.S., Fisher M.C. Phylogenetic species recognition and species concepts in Fungi. Fungal Genet. Biol. 2000, 31:21-32.
90. Van Dover C.L. The Ecology of Deep-sea Hydrothermal Vents 2000, Princeton University Press, Princeton.
91. Vogler A.P., Monaghan M.T. Recent advances in DNA taxonomy. J. Zool. Syst. Evol. Res. 2007, 45:1-10.
92. Vrijenhoek R.C. Cryptic species, phenotypic plasticity, and complex life histories: assessing deep-sea faunal diversity with molecular markers. Deep-Sea Res. Part II 2009, 56:1713-1723.
93. Warén A. New and little known Mollusca from Iceland and Scandinavia. Part 2. Sarsia 1993, 78:159-201.
94. Warén A., Carrozza F. Idas ghisottii sp.n., a new mytilid bivalve associated with sunken wood in the mediterranean. Boll. Malacologico 1990, 26:19-24.
95. Wheeler Q., Meier R. Species Concepts and Phylogenetic Theory: A Debate 2000, Columbia University Press, New York.
96. Will K.W., Mishler B.D., Wheeler Q.D. The perils of DNA barcoding and the need for integrative taxonomy. Syst. Biol. 2005, 54:844-851.
97. Will K.W., Rubinoff D. Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification. Cladistics 2004, 20:47-55.
98. Williams S.T. Origins and diversification of Indo-West Pacific marine fauna: evolutionary history and biogeography of turban shells (Gastropoda, Turbinidae). Biol. J. Linn. Soc. 2007, 92:573-592.
99. Williams S.T., Duda T.F., MacMillan W.O. Did tectonic activity stimulate Oligo-Miocene speciation in the Indo-West Pacific?. Evolution 2008, 62:1618-1634.
100. Won Y.-J., Jones W.J., Vrijenhoek R.C. Absence of cospeciation between deep-sea mytilids and their thiotrophic endosymbionts. J. Shellfish Res. 2008, 27:129-138.
101. Won Y., Hallam S.J., O'Mullan G.D., Vrijenhoek R.C. Cytonuclear disequilibrium in a hybrid zone involving deep-sea hydrothermal vent mussels of the genus Bathymodiolus. Mol. Ecol. 2003, 12:3185-3190.
102. Won Y., Young C.R., Lutz R.A., Vrijenhoek R.C. Dispersal barriers and isolation among deep-sea mussel populations (Mytilidae: Bathymodiolus) from eastern Pacific hydrothermal vents. Mol. Ecol. 2003, 12:169-184.
103. Wullschleger E.B., Jokela J. Morphological plasticity and divergence in life-history traits between two closely related freshwater snails, Lymnae ovata and Lymnae peregra. J. Molluscan Stud. 2002, 68:1-5.
104. Yeap K.L., Black R., Johnson M.S. The complexity of phenotypic plasticity in the intertidal snail Nodilittorina australis. Biol. J. Linn. Soc. 2001, 72:63-76.