Comparative phylogeography of three codistributed stomatopods: Origins and timing of regional lineage diversification in the Coral Triangle

Evolution

Volumn 60, Issue 9, 2006, Pages 1825-1839

  Barber, Paul H ^a,d   Erdmann, Mark V ^b   Palumbi, Stephen R ^c  

^a HARVARD UNIVERSITY   (United States)

^b Center for Applied Biodiversity Science   (United States)

^c STANFORD UNIVERSITY   (United States)

^d BOSTON UNIVERSITY   (United States)

Author keywords

Allopatric speciation; Biodiversity; Center of origin; Coral Triangle; Larval dispersal; Marine phylogeography; Stomatopod

Indexed keywords

ARCHIPELAGO; COMPARATIVE STUDY; CRUSTACEAN; GENE FLOW; GENETIC STRUCTURE; PHYLOGEOGRAPHY;

ANIMAL; ARTICLE; COMPARATIVE STUDY; CRUSTACEA; EVOLUTION; GENETIC VARIABILITY; GENETICS; INDIAN OCEAN; PACIFIC OCEAN; PHYLOGENY;

ANIMALS; CRUSTACEA; EVOLUTION; INDIAN OCEAN; PACIFIC OCEAN; PHYLOGENY; VARIATION (GENETICS);

ASIA; EURASIA; INDONESIA; MALUKU; SOUTHEAST ASIA;

ANTHOZOA; DECAPODA (CRUSTACEA); STOMATOPODA;

EID: 33751320652     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1554/05-596.1     Document Type: Article

References (108)

1. Ahyong, S. T. 2001. Revision of the Australian Stomatopod Crustacea. Rec. Aust. Mus. Suppl. 26:1-326.
2. Armsworth, P. R. 2001. Directed motion in the sea: efficient swimming by reef fish larvae. J. Theor. Biol. 210:81-91.
3. Avise, J. C. 1992. Molecular population structure and the biogeography of history of a regional fauna: a case history with lessons for conservation biology. Oikos 63:62-67.
4. _. 2000. Phylogeography: the history and formation of species. Harvard Univ. Press, Cambridge, MA.
5. Avise, J. C., J. Arnold, R. M. Ball, E. Bermingham, T. Lamb, J. E. Neigel, C. A. Reeb, and N. C. Saunders. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annu. Rev. Ecol. Syst. 18:489-522.
6. Barber, P. H., and D. R. Bellwood. 2005. Biodiversity hotspots: evolutionary origins of biodiversity in wrasses (Halichoeres: Labridae) in the Indo-Pacific and new world tropics. Mol. Phylogenet. Evol. 35:235-253.
7. Barber, P. H., and S. L. Boyce. 2006. Estimating diversity of Indo-Pacific coral reef stomatopods through DNA barcoding of stomatopod larvae. Proc. R. Soc. Lond. B 273:2053-2061.
8. Barber, P. H., and M. V. Erdmann. 2000. Molecular systematics of the Gonodactylidae (Stomatopoda) using mitochondrial cytochrome oxidase C (subunit 1) DNA sequence data. J. Crustacean Biol. 20(Spec. No. 2):20-36.
9. Barber, P. H., S. R. Palumbi, M. V. Erdmann, and M. K. Moosa. 2000. A marine Wallace's line? Nature 406:692-693.
10. Barber, P. H., S. R. Palumbi, M. V. Erdmann, and M. K. Moosa. 2002a. Sharp genetic breaks among populations of a benthic marine crustacean indicate limited oceanic larval transport: patterns, causes, and consequences. Mol. Ecol. 11:659-674.
11. Barber, P. H., M. K. Moosa, and S. R. Palumbi. 2002b. Rapid recovery of genetic diversity of stomatopod populations on Krakatau: temporal and spatial scales of marine larval dispersal. Proc. R. Soc. Lond. B 269:1591-1597.
12. Benzie, J. A. H. 1999. Major genetic differences between crown-of-thorns starfish (Acanthaster planci) populations in the Indian and Pacific Oceans. Evolution 53:1782-1795.
13. Bray, N. A., S. Hautala, J. Chong, and J. Pariwono. 1996. Largescale sea level, thermocline, and wind variations in the Indonesian Throughflow region. J. Geophys. Res. 101:12239-12254.
14. Briggs, J. C. 2000. Centrifugal speciation and centres of origin. J. Biogeogr. 27:1183-1188.
15. _. 2005. Coral reefs: conserving the evolutionary sources. Biol. Conserv. 126:297-305.
16. Bush, G. L. 1975. Modes of animal speciation. Annu. Rev. Ecol. Syst. 6:339-365.
17. Capelli, C., J. F. Wilson, M. Richards, M. P. Stumpf, F. Gratrix, S. Oppenheimer, P. Underhill, V. L. Pascali, T. M. Ko, and D. B. Goldstein. 2001. A predominantly indigenous paternal heritage for the Austronesian-speaking peoples of insular Southeast Asia and Oceania. Am. J. Hum. Genet. 68:432-443.
18. Cronin, T. W., and R. B. Forward. 1986. Vertical migration cycles of crab larvae and their role in larval dispersal. Bull. Mar. Sci. 39:192-201.
19. Cunningham, C. W., and T. M. Collins. 1994. Developing model systems for molecular biogeography: vicariance and interchange in marine invertebrates. Pp. 405-434 in B. Schierwater, B. Streit, G. P. Wagner, and R. DeSalle, eds. Molecular ecology and evolution: approaches and applications. Birkhauser Verlag, Basel.
20. Doherty, P. J., S. Planes, and P. Mather. 1995. Gene flow and larval duration in seven species of fish from the Great Barrier Reef. Ecology 76:2373-2391.
21. Duda, T. F., and S. R. Palumbi. 1999. Population structure of the black tiger prawn, Penaeus monodon, among western Indian Ocean and western Pacific populations. Mar. Biol. 134:705-710.
22. Duke, N. C., J. A. H. Benzie, J. A. Goodall, and E. R. Ballment. 1998. Genetic structure and evolution of species in the mangrove genus Avicennia (Avicenniaceae) in the Indo-West Pacific. Evolution 52:1612-1626.
23. Ekman, S. 1953. Zoogeography of the sea. Sidgwick and Jackson, Ltd., London.
24. Erdmann, M. V. N. 1997. The ecology, distribution, and bioindicator potential of Indonesian coral reef stomatopod communities. Pp. 1-290. Integrative biology. Ph.D. diss. University of California, Berkeley.
25. Fauvelot, C., and S. Planes. 2002. Understanding origins of presentday genetic structure in marine fish: biologically or historically driven patterns? Mar. Biol. 141:773-788.
26. Fleminger, A. 1986. The Pleistocene equatorial barrier between the Indian and Pacific Oceans and a likely cause for Wallace's Line. Pp. 84-97 in A. C. Pierrot-Bults, ed. Pelagic biogeography: proceedings of an international conference. May 29-June 5 1985, The Netherlands. UNESCO, Paris.
27. Folmer, O., M. Black, W. Hoeh, R. Lutz, and R. Vrijenhoek. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit 1 from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3:294-299.
28. Forward, R. B., J. Swanson, R. A. Tankersely, and J. M. Welch. 1997. Endogenous swimming rhythms of blue crab, Callinectes sapidus, megalopae: effects of offshore and estuarine cues. Mar. Biol. 127:621-628.
29. Godfrey, J. S. 1996. The effect of the Indonesian Throughflow on ocean circulation and heat exchange with the atmosphere: a review. J. Geophys. Res. 101:12217-12237.
30. Gordon, A. L., and R. A. Fine. 1996. Pathways of water between the Pacific and Indian oceans in the Indonesian seas. Nature 379:146-149.
31. Green, A., and P. J. Mous. 2004. Delineating the Coral Triangle, its ecoregions and functional seascapes. The Nature Conservancy Expert Workshop, South East Asia Center for Marine Protected Areas, Bali, Indonesia. 24 pp.
32. Hall, R. 1998. The plate techtonics of Cenozoic SE Asia and the distribution of land and sea. Pp. 99-132 in R. Hall and J. D. Holloway, eds. Biogeography and geological evolution of SE Asia. Backhuys Publishers, Leiden.
33. Hamano, T., T. Kikkawa, S. Ueno, and K. I. Hayashi. 1995. Use of larval size, instead of larval stage, to study the ecology of a stomatopod crustacean Oratosquilla oratoria. Fish. Sci. 61:165-166.
34. Hellberg, M. E., R. S. Burton, J. E. Neigel, and S. R. Palumbi. 2002. Genetic assessment of connectivity among marine populations. Bull. Mar. Sci. 70:273-290.
35. Hudson, R. R., M. Slatkin, and W. P. Maddison. 1992. Estimation of gene flow from DNA sequence data. Genetics 132:583-589.
36. Hughes, T. P., D. R. Bellwood, and S. R. Connolly. 2002. Biodiversity hotspots, centres of endemicity, and the conservation of coral reefs. Ecol. Lett. 5:775-784.
37. Jokiel, P., and F. J. Martinelli. 1992. The vortex model of coral reef biogeography. J. Biogeogr. 19:449-458.
38. Jones, G. P., M. J. Milicich, M. J. Emslie, and C. Lunow. 1999. Self-recruitment in a coral reef fish population. Nature 402:802-804.
39. Katz, C. H., J. S. Cobb, and M. Spaulding. 1994. Larval behavior, hydrodynamic transport, and potential offshore-to-inshore recruitment in the American lobster Homarus americanus. Mar. Ecol. Prog. Ser. 103:265-273.
40. Kirkendale, L. A., and C. P. Meyer. 2004. Phylogeography of the Patelloida profunda group (Gastropoda: Lottidae): diversification in a dispersal driven marine system. Mol. Ecol. 13: 2749-2762.
41. Knowlton, N. 1993. Sibling species in the sea. Annu. Rev. Ecol. Syst. 24:189-216.
42. Knowlton, N., and L. A. Weigt. 1998. New dates and new rates for divergence across the Isthmus of Panama. Proc. R. Soc. Lond. B 265:2257-2263.
43. Lacson, J. M., and S. Clark. 1995. Genetic divergence of Maldivian and Micronesian demes of the damselfishes Stegastes nigricans, Chrysiptera biocellata, C. glauca and C. leucopoma (Pomacentridae). Mar. Biol. 121:585-590.
44. Lavery, S., C. Moritz, and D. R. Fielder. 1996. Indo-Pacific population structure and evolutionary history of the coconut crab Birgus latro. Mol. Ecol. 5:557-570.
45. Leis, J. M., and B. M. Carson-Ewart. 1997. In situ swimming speeds of the late pelagic larvae of some Indo-Pacific coral-reef fishes. Mar. Ecol. Prog. Ser. 159:165-174.
46. Lourie, S. A., D. M. Green, and A. C. J. Vincent. 2005. Dispersal, habitat differences, and comparative phylogeography of Southeast Asian seahorses (Syngnathidae: Hippocampus). Mol. Ecol. 14:1073-1094.
47. Lukas, R., E. Firing, P. Hacker, P. L. Richardson, C. A. Collins, R. Fine, and R. Gammon. 1991. Observations of the Mindanao Current during the Western Equatorial Pacific Ocean circulation study. J. Geophys. Res. 96:7089-7104.
48. Lynch, J. D. 1989. The gauge of speciation: on the frequencies of modes of speciation. Pp. 527-556 in D. Otte and J. A. Endler, eds. Speciation and its consequences. Sinauer, Sunderland, MA. Maddison, W. P., and D. R. Maddison. 2002. MacClade. Sinauer, Sunderland, MA.
49. Manning, R. B. 1963. Notes on the embryology of the stomatopod crustacean Gonodactylus oerstedii Hansen. Bull. Mar. Sci. Gulf Caribb. 13:422-432.
50. Mayr, E. 1942. Systematics and the origin of species. Columbia Univ. Press, New York.
51. McManus, J. W. 1985. Marine speciation, tectonics and sea-level changes in southeast Asia. Proc. Fifth Int. Coral Reef Congr. Tahiti 4:133-138.
52. McMillan, W. O., and S. R. Palumbi. 1995. Concordant evolutionary patterns among Indo-West Pacific butterflyfishes. Proc. R. Soc. Lond. B 260:229-236.
53. Meyer, C. P. 2003. Molecular systematics of cowries (Gastropoda: Cypraeidae) and diversification patterns in the tropics. Biol. J. Linn. Soc. 79:401-459.
54. Meyer, C. P., J. B. Geller, and G. Paulay. 2005. Fine scale endemism on coral reefs: archipelagic differentiation in turbinid gastropods. Evolution 59:113-125.
55. Meyers, G. 1996. Variation of Indonesian Throughflow and the El Niño Southern Oscillation. J. Geophys. Res. 101:12255-12263.
56. Michalakis, Y., and L. Excoffier. 1996. A generic estimation of population subdivision using distances between alleles with special reference for microsatellite loci. Genetics 142:1061-1064.
57. Mora, C., P. M. Chittaro, P. F. Sale, J. P. Kritzer, and S. A. Ludsin. 2003. Patterns and processes in reef fish diversity. Nature 421:933-936.
58. Morey, S. L., J. F. Shriver, and J. J. O'Brien. 1999. The effects of Halmahera on the Indonesian Throughflow. J. Geophys. Res. 104:23281-23296.
59. Morgan, S. A. 1995. Life and death in the plankton: larval mortality and adaptation. Pp. 279-322 in L. McEdwards, ed. Ecology of marine invertebrate larvae. CRC Press, New York.
60. Moritz, C. 1999. Conservation units and translocations: strategies for conserving evolutionary processes. Hereditas 130:217-228.
61. _. 2002. Strategies to protect biological diversity and the evolutionary processes that sustain it. Syst. Biol. 51:238-254.
62. MPA News. 2004. Australian parliament passes re-zoning bill for Great Barrier Reef, creating world's largest reserve system. Marine Affairs Research and Education, Seattle, WA. Available via http://depts.washington.edu/mpanews.
63. Myers, N., R. A. Mittermeier, C. G. Mittermeier, G. A. B. da Fonseca, and J. Kent. 2000. Biodiversity hotspots for conservation priorities. Nature 403:853-858.
64. Nielsen, R., and J. Wakeley. 2001. Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158:885-896.
65. Nof, D. 1995. Choked flows from the Pacific to the Indian-Ocean. J. Phys. Oceanogr. 25:1369-1383.
66. Palumbi, S. R. 1992. Marine speciation on a small planet. Trends Ecol. Evol. 7:114-118.
67. _. 1994. Genetic divergence, reproductive isolation, and marine speciation. Annu. Rev. Ecol. Syst. 25:547-572.
68. _. 1997. Molecular biogeography of the Pacific. Coral Reefs 16:S47-S52.
69. _. 2004. Marine reserves and ocean neighborhoods: the spatial scale of marine populations and their management. Annu. Rev. Environ. Res. 29:31-68.
70. Pannell, J. R. 2003. Coalescence in a metapopulation with recurrent local extinction and recolonization. Evolution 57:949-961.
71. Paulay, G., and C. Meyer. 2002. Diversification in the tropical Pacific: comparisons between marine and terrestrial systems and the importance of founder speciation. Int. Comp. Biol. 42:922-934.
72. Pillans, B., J. Chappell, and T. R. Naish. 1998. A review of the Milankovitch climatic beat: template for Plio-Pleistocene sea-level changes and sequence stratigraphy. Sediment. Geol. 122:5-21.
73. Porter, S. C. 1989. Some geological implications of average Quaternary glacial conditions. Quat. Res. 32:245-261.
74. Posada, D., and K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
75. Potts, D. C. 1985. Sea-level fluctuations and speciation in Scleractinia. Proc. Fifth Int. Coral Reef Congr. Tahiti 4:127-132.
76. Provenzano, A. J., and R. B. Manning. 1978. Studies on development of stomatopod crustacea II. The later larval stages of Gonodactylus oerstedii Hansen reared in the laboratory. Bull. Mar. Sci. 28:297-315.
77. Roberts, C. M., C. J. McClean, J. E. N. Veron, J. P. Hawkins, G. R. Allen, D. E. McAllister, C. G. Mittermeier, F. W. Schueler, M. Spalding, F. Wells, C. Vynne, and T. B. Werner. 2002. Marine biodiversity hotspots and conservation priorities for tropical reefs. Science 295:1280-1284.
78. Roberts, C. M., G. Branch, R. H. Bustamante, J. C. Castilla, J. Dugan, B. S. Halpern, K. D. Lafferty, H. Leslie, J. Lubchenco, D. McArdle, M. Ruckelshaus, and R. R. Warner. 2003. Application of ecological criteria in selecting marine reserves and developing reserve networks. Ecol. Appl. 13:S215-S228.
79. Sale, P. F., R. K. Cowen, B. S. Danilowicz, G. P. Jones, J. P. Kritzer, K. C. Lindeman, S. Planes, N. V. C. Polunin, G. R. Russ, Y. J. Sadovy, and R. S. Steneck. 2005. Critical science gaps impede use of no-take fishery reserves Trends Ecol. Evol. 20:74-80.
80. Schneider, S., D. Roessli, and L. Excoffier. 2000. Arlequin. Ver. 2.000. A software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
81. Shulman, M. J., and E. Bermingham. 1995. Early life histories, ocean currents, and the population genetics of Caribbean reef fishes. Evolution 49:897-910.
82. Slatkin, M. 1977. Gene flow and genetic drift in a species subject to frequent local extinction. Theor. Popul. Biol. 12:253-262.
83. Smith, C. I., and B. D. Farrell. 2005. Range expansions in the flightless longhorn cactus beetles, Moneilema gigas and Moneilema armatum, in response to Pleistocene climate changes. Mol. Ecol. 14:1025-1044.
84. Springer, V. G. 1982. Pacific Plate biogeography, with special reference to shorefishes. Smithson. Contrib. Zool. 367:1-182.
85. Springer, V. G., and J. T. Williams. 1990. Widely distributed pacific plate endemics and lowered sea-level. Bull. Mar. Sci. 47:631-640.
86. Stobutzki, I. C., and D. R. Bellwood. 1997. Sustained swimming abilities of the late pelagic stages of coral reef fishes. Mar. Ecol. Prog. Ser. 149:35-41.
87. Swearer, S. E., J. E. Caselle, D. W. Lea, and R. R. Warner. 1999. Larval retention and recruitment in an island population of a coral-reef fish. Nature 402:799-802.
88. Swofford, D. L. 2002. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Sinauer, Sunderland, MA.
89. Tankersley, R. A., and R. B. Forward. 1994. Endogenous swimming rhythms in estuarine crab megalopae: implications for flood-tide transport. Mar. Biol. 118:415-423.
90. Taylor, M. S., and M. E. Hellberg. 2003. Genetic evidence for local retention of pelagic larvae in a Caribbean reef fish. Science 299:107-109.
91. Thorrold, S. R., C. Latkoczy, P. K. Swart, and C. M. Jones. 2001. Natal homing in a marine fish metapopulation. Science 291:297-299.
92. Turelli, M., N. H. Barton, and J. A. Coyne. 2001. Theory and speciation. Trends Ecol. Evol. 16:330-343.
93. Van den Bergh, G., J. de Vos, and P. Y. Sondaar. 2001. The Late Quaternary palaeogeography of mammal evolution in the Indonesian Archipelago. Palaeogeog. Palaeoclimatol. Palaeoecol. 171:385-408.
94. Van Oosterzee, P. 1997. Where worlds collide: the Wallace Line. Cornell Univ. Press, Ithaca, NY.
95. Veron, J. E. N. 2000. Corals of the World. AIMS, Townsville, Australia.
96. Voris, H. K. 2000. Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations. J. Biogeogr. 27:1153-1167.
97. Wakeley, J. 2000. The effects of subdivision on the genetic divergence of populations and species. Evolution 54:1092-1101.
98. Walsh, P. S., D. A. Metzger, and R. Higuchi. 1991. Chelex-100 as a medium for simple extraction of DNA for PCR based typing from forensic material. BioTechniques 10:506-513.
99. Williams, S. T., and J. A. H. Benzie. 1998. Evidence of a phylogeographic break between populations of a high-dispersal starfish: congruent regions within the Indo-West Pacific defined by color morphs, mtDNA and allozyme data. Evolution 52:87-99.
100. Williams, S. T., J. Jara, E. Gomez, and N. Knowlton. 2002. The marine Indo-West Pacific break: Contrasting the resolving power of mitochondrial and nuclear genes. Int. Comp. Biol. 42:941-952.
101. Williams, S. T., and D. G. Reid. 2004. Speciation and diversity on tropical rocky shores: a global phylogeny of snails of the genus Echinolittorina. Evolution 58:2227-2251.
102. Wolanski, E., P. Doherty, and J. Carleton. 1997. Directional swimming of fish larvae determines connectivity of fish populations on the Great Barrier Reef. Naturwissenschaften 84:262-268.
103. Woodin, S. A. 1976. Adult-larval interactions in dense infaunal assemblages: patterns of abundance. J. Mar. Res. 34:25-41.
104. Woodland, D. J. 1986. Wallace's Line and the distribution of marine inshore fishes. Pp. 453-460 in T. Uyeno, R. Arai, T. Taniuchi and K. Matsuura, eds. Indo-Pacific fish biology: proceedings of the Second International Conference on Indo-Pacific Fishes. Ichthyological Society of Japan, Tokyo.
105. Wray, C. G., N. H. Landman, and J. Bonacum. 1995. Genetic divergence and geographic diversification in Nautilus. Paleobiology 21:220-228.
106. Wyrtki, K. 1961. Physical oceanography of the southeast Asian waters. University of California, San Diego.
107. _. 1987. Indonesian Throughflow and the associated pressure gradient. J. Geophys. Res. 92:12941-12946.
108. Yoshimura, T., H. Yamakawa, and E. Kozasa. 1999. Distribution of final stage phyllosoma larvae and free-swimming pueruli of Panulirus japonicus around the Kuroshio Current off southern Kyusyu, Japan. Mar. Biol. 133:293-306.