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Volumn 21, Issue 3-4, 2010, Pages 105-114

Mitochondrial genome phylogeny among Asiatic black bear Ursus thibetanus subspecies and comprehensive analysis of their control regions

Author keywords

Asiatic black bear; Complete mitochondrial genomes; Control region; Repeat pattern; Ursid phylogeny

Indexed keywords

RIBOSOME RNA;

EID: 77956083542     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.3109/19401736.2010.491864     Document Type: Article
Times cited : (29)

References (33)
  • 1
    • 73149098730 scopus 로고    scopus 로고
    • Complete mitochondrial genome of the Korean spotted seal Phoca largha (Mammalia, Pinnipedia, Phocidae): Genetic differences between P. largha and Phoca vitulina
    • Bahn SY, Choi EH, Jang KH, Kim SK, Ryu SH, HwangUW. 2009. Complete mitochondrial genome of the Korean spotted seal Phoca largha (Mammalia, Pinnipedia, Phocidae): Genetic differences between P. largha and Phoca vitulina. Mitochondrial DNA 20:105-106.
    • (2009) Mitochondrial DNA , vol.20 , pp. 105-106
    • Bahn, S.Y.1    Choi, E.H.2    Jang, K.H.3    Kim, S.K.4    Ryu, S.H.5    Hwang, U.W.6
  • 2
    • 0037228881 scopus 로고    scopus 로고
    • Structure and evolution of the mitochondrial DNA complete control region in the Lizard Lacerta dugesii (Lacertidae, Sauria)
    • Brehm A, Harris DJ, Alves C, Jesus J, Thomarat F, Vicente L. 2003. Structure and evolution of the mitochondrial DNA complete control region in the Lizard Lacerta dugesii (Lacertidae, Sauria). J Mol Evol 56:46-53.
    • (2003) J Mol Evol , vol.56 , pp. 46-53
    • Brehm, A.1    Harris, D.J.2    Alves, C.3    Jesus, J.4    Thomarat, F.5    Vicente, L.6
  • 3
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 4
    • 40049100387 scopus 로고    scopus 로고
    • Complete mitochondrial genome of a Chinese scorpion Mesobuthus martensii (Chelicerata, Scorpiones, Buthidae)
    • Choi EH, Park SJ, Jang KH, Hwang UW. 2007. Complete mitochondrial genome of a Chinese scorpion Mesobuthus martensii (Chelicerata, Scorpiones, Buthidae). DNA Seq 18: 461-473.
    • (2007) DNA Seq , vol.18 , pp. 461-473
    • Choi, E.H.1    Park, S.J.2    Jang, K.H.3    Hwang, U.W.4
  • 5
    • 0036187779 scopus 로고    scopus 로고
    • Conserved primers for rapid sequencing of the complete mitochondrial genome from carnivores, applied to three species of bears
    • Delisle I, Strobeck C. 2002. Conserved primers for rapid sequencing of the complete mitochondrial genome from carnivores, applied to three species of bears. Mol Biol Evol 19: 357-361.
    • (2002) Mol Biol Evol , vol.19 , pp. 357-361
    • Delisle, I.1    Strobeck, C.2
  • 6
    • 0036102162 scopus 로고    scopus 로고
    • Characterization and evolution of the mitochondrial DNA control region in Hornbills (Bucerotiformes)
    • Delport Q, Ferguson JWH, Bloomer P. 2002. Characterization and evolution of the mitochondrial DNA control region in Hornbills (Bucerotiformes). J Mol Evol 54:794-806.
    • (2002) J Mol Evol , vol.54 , pp. 794-806
    • Delport, Q.1    Jwh, F.2    Bloomer, P.3
  • 7
    • 0023943474 scopus 로고
    • Comparisons of ape and human sequences that regulate mitochondrial DNA transcription and D-loop DNA synthesis
    • Foran DR, Hixson JE, Brown WM. 1988. Comparisons of ape and human sequences that regulate mitochondrial DNA transcription and D-loop DNA synthesis. Nucleic Acids Res 16: 5841-5861.
    • (1988) Nucleic Acids Res , vol.16 , pp. 5841-5861
    • Foran, D.R.1    Hixson, J.E.2    Brown, W.M.3
  • 9
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98.
    • (1999) Nucleic Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 10
    • 0028341048 scopus 로고
    • Rapid evolution of a heteroplasmic repetitive sequence in the mitochondrial DNA control region of Carnivores
    • Hoelzel AR, Lopez JV, Dover GA, O'Brien SJ. 1994. Rapid evolution of a heteroplasmic repetitive sequence in the mitochondrial DNA control region of Carnivores. J Mol Evol 39:191-199.
    • (1994) J Mol Evol , vol.39 , pp. 191-199
    • Hoelzel, A.R.1    Lopez, J.V.2    Dover, G.A.3    O'Brien, S.J.4
  • 12
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 13
    • 54949114753 scopus 로고    scopus 로고
    • A comprehensive analysis of three Asiatic black bear mitochondrial genomes (subspecies ussuricus, formosanus and mupinensis), with emphasis on the complete mtDNA sequence of Ursus thibetanus ussuricus (Ursidae)
    • Hwang DS, Ki JS, Jeong DH, Kim BH, Lee BK, Han SH, Lee JS. 2008. A comprehensive analysis of three Asiatic black bear mitochondrial genomes (subspecies ussuricus, formosanus and mupinensis), with emphasis on the complete mtDNA sequence of Ursus thibetanus ussuricus (Ursidae). Mitochondrial DNA 19:418-429.
    • (2008) Mitochondrial DNA , vol.19 , pp. 418-429
    • Hwang, D.S.1    Ki, J.S.2    Jeong, D.H.3    Kim, B.H.4    Lee, B.K.5    Han, S.H.6    Lee, J.S.7
  • 14
    • 65549164448 scopus 로고    scopus 로고
    • Complete mitochondrial genome of Bugula neritina (Bryozoa, Gymnolaemata, Cheilostomata): Phylogenetic position of Bryozoa and phylogeny of lophophorates within the Lophotrochozoa
    • Jang KH, Hwang UW. 2009. Complete mitochondrial genome of Bugula neritina (Bryozoa, Gymnolaemata, Cheilostomata): Phylogenetic position of Bryozoa and phylogeny of lophophorates within the Lophotrochozoa. BMC Genomics 21:167.
    • (2009) BMC Genomics , vol.21 , pp. 167
    • Jang, K.H.1    Hwang, U.W.2
  • 17
    • 77956078799 scopus 로고    scopus 로고
    • Restoration of Asiatic black bears through reintroductions on Mt Jiri, South Korea
    • Lee BK. 2009. Restoration of Asiatic black bears through reintroductions on Mt. Jiri, South Korea. Int Bear News 18: 8-10.
    • (2009) Int Bear News , vol.18 , pp. 8-10
    • Lee, B.K.1
  • 18
    • 38549141743 scopus 로고    scopus 로고
    • Mitome: Dynamic and interactive database for comparative mitochondrial genomics in metazoan animals
    • Lee YS, Oh J, Kim YU, Kim N, Yang S, HwangUW. 2008. Mitome: Dynamic and interactive database for comparative mitochondrial genomics in metazoan animals. Nucleic Acids Res 36: 938-942.
    • (2008) Nucleic Acids Res , vol.36 , pp. 938-942
    • Lee, Y.S.1    Oh, J.2    Kim, Y.U.3    Kim, N.4    Yang, S.5    Hwang, U.W.6
  • 19
    • 33846044194 scopus 로고    scopus 로고
    • The Complete mitochondrial genome of Pollicipes mitella (Crustacea, Maxillopoda, Cirripedia): Non-monophylies of Maxillopoda and Crustacea
    • Lim JT, Hwang UW. 2006. The Complete mitochondrial genome of Pollicipes mitella (Crustacea, Maxillopoda, Cirripedia): Non-monophylies of Maxillopoda and Crustacea. Mol Cells 22:314-322.
    • (2006) Mol Cells , vol.22 , pp. 314-322
    • Lim, J.T.1    Hwang, U.W.2
  • 20
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR. 1997. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 21
    • 0031039450 scopus 로고    scopus 로고
    • Structural conservation and variation in the mitochondrial control region of fringilline finches (Fringilla spp.) and the greenfinch (Carduelis chloris)
    • Marshall H, Baker A. 1997. Structural conservation and variation in the mitochondrial control region of fringilline finches (Fringilla spp.) and the greenfinch (Carduelis chloris). Mol Biol Evol 14:173-194.
    • (1997) Mol Biol Evol , vol.14 , pp. 173-194
    • Marshall, H.1    Baker, A.2
  • 22
    • 0029955048 scopus 로고    scopus 로고
    • RNAdraw: An intergrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft windows
    • Matzura O,Wennborg A. 1996. RNAdraw: An intergrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft windows. Comput Appl Biosci 12:247-249.
    • (1996) Comput Appl Biosci , vol.12 , pp. 247-249
    • Matzura Owennborg, A.1
  • 24
    • 38049177406 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the sea spider Achelia bituberculata (Pycnogonida, Ammotheidae): Arthropod ground pattern of gene arrangement
    • Park SJ, Lee YS, Hwang UW. 2007. The complete mitochondrial genome of the sea spider Achelia bituberculata (Pycnogonida, Ammotheidae): Arthropod ground pattern of gene arrangement. BMC Genomics 8:343.
    • (2007) BMC Genomics , vol.8 , pp. 343
    • Park, S.J.1    Lee, Y.S.2    Hwang, U.W.3
  • 25
    • 34250835861 scopus 로고    scopus 로고
    • The complete mitochondrial genome and phylogenetic analysis of the giant panda (Ailuropoda melanoleuca)
    • Peng R, Zeng B, Meng X, Yue B, Zhang Z, Zou F. 2007. The complete mitochondrial genome and phylogenetic analysis of the giant panda (Ailuropoda melanoleuca). Gene 397:76-83.
    • (2007) Gene , vol.397 , pp. 76-83
    • Peng, R.1    Zeng, B.2    Meng, X.3    Yue, B.4    Zhang, Z.5    Zou, F.6
  • 26
    • 0021876634 scopus 로고
    • The complete nucleotide sequence of the Xenopus laevis mitochondrial genome
    • Roe BA, Ma DP, Wilson RK, Wong JFH. 1985. The complete nucleotide sequence of the Xenopus laevis mitochondrial genome. J Biol Chem 260:9759-9774.
    • (1985) J Biol Chem , vol.260 , pp. 9759-9774
    • Roe, B.A.1    Ma, D.P.2    Wilson, R.K.3    Jfh, W.4
  • 28
    • 0002298492 scopus 로고
    • The status and conservation of the bears of the world
    • Servheen C. 1990. The status and conservation of the bears of the world. Int Conf Bear Res Manage Monogr Ser 2:1-32.
    • (1990) Int Conf Bear Res Manage Monogr ser , vol.2 , pp. 1-32
    • Servheen, C.1
  • 29
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 30
    • 0030162986 scopus 로고    scopus 로고
    • A phylogeny of the bears (Ursidae) inferred from complete sequences of three mitochondrial genes
    • Talbot SL, Shields GF. 1996. A phylogeny of the bears (Ursidae) inferred from complete sequences of three mitochondrial genes. Mol Phylogenet Evol 5:567-575.
    • (1996) Mol Phylogenet Evol , vol.5 , pp. 567-575
    • Talbot, S.L.1    Shields, G.F.2
  • 31
    • 34248155737 scopus 로고    scopus 로고
    • Complete mitochondrial genome of a troglobite millipedeAntrokoreana gracilipes (Diplopoda, Juliformia, Julida), and juliformian phylogeny
    • Woo HJ, Lee YS, Park SJ, Lim JT, Jang KH, Choi EH, Kim SK, Hwang UW. 2007. Complete mitochondrial genome of a troglobite millipedeAntrokoreana gracilipes (Diplopoda, Juliformia, Julida), and juliformian phylogeny.Mol Cells 23:182-191.
    • (2007) Mol Cells , vol.23 , pp. 182-191
    • Woo, H.J.1    Lee, Y.S.2    Park, S.J.3    Lim, J.T.4    Jang, K.H.5    Choi, E.H.6    Kim, S.K.7    Hwang, U.W.8
  • 32
    • 77449085410 scopus 로고    scopus 로고
    • Mitochondrial genome of the Korean colubrid snake Elaphe schrenckii (Reptilia; Squamata; Colubridae)
    • Woo HJ, Ryu SH, Jang KH, Choi EH, Kim SK, Hwang UW. 2009. Mitochondrial genome of the Korean colubrid snake Elaphe schrenckii (Reptilia; Squamata; Colubridae). Mitochondrial DNA 20:107-109.
    • (2009) Mitochondrial DNA , vol.20 , pp. 107-109
    • Woo, H.J.1    Ryu, S.H.2    Jang, K.H.3    Choi, E.H.4    Kim, S.K.5    Hwang, U.W.6
  • 33
    • 37349066179 scopus 로고    scopus 로고
    • Analysis of complete mitochondrial genomes sequences increases phylogenetic resolution of bears (Ursidae), a mammalian family that experienced rapid speciation
    • Yu L, Li YW, Ryder OA, Zhang YP. 2007. Analysis of complete mitochondrial genomes sequences increases phylogenetic resolution of bears (Ursidae), a mammalian family that experienced rapid speciation. BMC Evol Biol 7:198.
    • (2007) BMC Evol Biol , vol.7 , pp. 198
    • Yu, L.1    Li, Y.W.2    Ryder, O.A.3    Zhang, Y.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.