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Volumn 19, Issue 4, 2008, Pages 418-429

A comprehensive analysis of three Asiatic black bear mitochondrial genomes (subspecies ussuricus, formosanus and mupinensis), with emphasis on the complete mtDNA sequence of Ursus thibetanus ussuricus (Ursidae)

Author keywords

Asiatic black bear; Control region; Minisatellite; Mitochondrial genome; Ursus thibetanus

Indexed keywords

DNA MINISATELLITE; MITOCHONDRIAL DNA; RIBOSOME RNA; TRANSFER RNA;

EID: 54949114753     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.1080/19401730802389525     Document Type: Article
Times cited : (21)

References (32)
  • 2
    • 0026670562 scopus 로고
    • Heteroplasmy of short tandem repeats in mitochondrial DNA of Atlantic cod, Gadus morhua
    • Arnason E, Rand DM. 1992. Heteroplasmy of short tandem repeats in mitochondrial DNA of Atlantic cod, Gadus morhua. Genetics 132:211-220.
    • (1992) Genetics , vol.132 , pp. 211-220
    • Arnason, E.1    Rand, D.M.2
  • 3
    • 0002782114 scopus 로고
    • Molecular variation and ecological problems
    • Berry RJ, Crawford TJ, Hewitt GM, editors, Oxford: Blackwell Scientific Publications. p
    • Burke T, Rainey WE, White TJ. 1992. Molecular variation and ecological problems. In: Berry RJ, Crawford TJ, Hewitt GM, editors. Genes in ecology. Oxford: Blackwell Scientific Publications. p 229-254.
    • (1992) Genes in ecology , pp. 229-254
    • Burke, T.1    Rainey, W.E.2    White, T.J.3
  • 4
    • 0027996845 scopus 로고
    • Evolutionary analysis of cytochrome b sequences in some Perciformes: Evidence for a slower rate of evolution than in mammals
    • Cantatore P, Roberti M, Pesole G, Ludovico A, Milella F, Gadaleta MN, Saccone C. 1994. Evolutionary analysis of cytochrome b sequences in some Perciformes: Evidence for a slower rate of evolution than in mammals. J Mol Evol 39:589-597.
    • (1994) J Mol Evol , vol.39 , pp. 589-597
    • Cantatore, P.1    Roberti, M.2    Pesole, G.3    Ludovico, A.4    Milella, F.5    Gadaleta, M.N.6    Saccone, C.7
  • 5
    • 0028082089 scopus 로고
    • The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome
    • Chang Y-C, Hunag F-L, Lo T-B. 1994. The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome. J Mol Evol 38:138-155.
    • (1994) J Mol Evol , vol.38 , pp. 138-155
    • Chang, Y.-C.1    Hunag, F.-L.2    Lo, T.-B.3
  • 6
    • 0036187779 scopus 로고    scopus 로고
    • Conserved primers for rapid sequencing of the complete mitochondrial genome from carnivores, applied to three species of bears
    • Delisle I, Strobeck C. 2002. Conserved primers for rapid sequencing of the complete mitochondrial genome from carnivores, applied to three species of bears. Mol Biol Evol 19:357-361.
    • (2002) Mol Biol Evol , vol.19 , pp. 357-361
    • Delisle, I.1    Strobeck, C.2
  • 7
    • 0012353175 scopus 로고
    • Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences
    • Doda JN, Wright CT, Clayton DA. 1981. Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences. Proc Natl Acad Sci USA 78:6116-6120.
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 6116-6120
    • Doda, J.N.1    Wright, C.T.2    Clayton, D.A.3
  • 9
    • 0027225783 scopus 로고
    • A compilation of large subunit (23S and 23S-like) ribosomal RNA structures
    • Gutell RR, Gray MW, Schnare MN. 1993. A compilation of large subunit (23S and 23S-like) ribosomal RNA structures. Nucl Acids Res 21:3055-3074.
    • (1993) Nucl Acids Res , vol.21 , pp. 3055-3074
    • Gutell, R.R.1    Gray, M.W.2    Schnare, M.N.3
  • 10
    • 33846910537 scopus 로고    scopus 로고
    • A complete mitochondrial genome sequence of Asian black bear Sichuan subspecies (Ursus thibetanus mupinensis)
    • Hou WR, Chen Y, Wu X, Hu JC, Peng ZS, Yang J, et al. 2007. A complete mitochondrial genome sequence of Asian black bear Sichuan subspecies (Ursus thibetanus mupinensis). Int J Biol Sci 3:85-90.
    • (2007) Int J Biol Sci , vol.3 , pp. 85-90
    • Hou, W.R.1    Chen, Y.2    Wu, X.3    Hu, J.C.4    Peng, Z.S.5    Yang, J.6
  • 11
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 12
    • 3342987490 scopus 로고    scopus 로고
    • Phylogenetic relationships among fragmented Asian black bear (Ursus thibetanus) populations in western Japan
    • Ishibashi Y, Saitoh T. 2004. Phylogenetic relationships among fragmented Asian black bear (Ursus thibetanus) populations in western Japan. Conserv Genet 5:311-323.
    • (2004) Conserv Genet , vol.5 , pp. 311-323
    • Ishibashi, Y.1    Saitoh, T.2
  • 13
    • 4344611675 scopus 로고    scopus 로고
    • Detection of tRNA based on the cloverleaf secondary structure
    • Kinouchi M, Kanaya S, Ikemura T, Kudo Y. 2000. Detection of tRNA based on the cloverleaf secondary structure. Genome Inform 11:301-302.
    • (2000) Genome Inform , vol.11 , pp. 301-302
    • Kinouchi, M.1    Kanaya, S.2    Ikemura, T.3    Kudo, Y.4
  • 14
    • 0031696736 scopus 로고    scopus 로고
    • The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions
    • Kumazawa Y, Ota H, Nishida M, Ozawa T. 1998. The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions. Genetics 150:313-329.
    • (1998) Genetics , vol.150 , pp. 313-329
    • Kumazawa, Y.1    Ota, H.2    Nishida, M.3    Ozawa, T.4
  • 15
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR. 1997. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucl Acids Res 25:955-964.
    • (1997) Nucl Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 16
    • 0032211421 scopus 로고    scopus 로고
    • Mitochondrial DNA variable number tandem repeats (VNTRs): Utility and problems in molecular ecology
    • Lunt DH, Whipple LE, Hyman BC. 1998. Mitochondrial DNA variable number tandem repeats (VNTRs): Utility and problems in molecular ecology. Mol Ecol 7:1441-1455.
    • (1998) Mol Ecol , vol.7 , pp. 1441-1455
    • Lunt, D.H.1    Whipple, L.E.2    Hyman, B.C.3
  • 17
    • 0032940104 scopus 로고    scopus 로고
    • Microevolution of the mitochondrial DNA control region in the Japanese brown bear (Ursus arctos) population
    • Matsuhashi T, Masuda R, Mano T, Yoshida MC. 1999. Microevolution of the mitochondrial DNA control region in the Japanese brown bear (Ursus arctos) population. Mol Biol Evol 16:676-684.
    • (1999) Mol Biol Evol , vol.16 , pp. 676-684
    • Matsuhashi, T.1    Masuda, R.2    Mano, T.3    Yoshida, M.C.4
  • 18
    • 3342987490 scopus 로고    scopus 로고
    • Phylogenetic relationships among fragmented Asian black bear (Ursus thibetanus) populations in western Japan
    • Ohnishi N, Saitoh T, Ishibashi Y. 2007. Phylogenetic relationships among fragmented Asian black bear (Ursus thibetanus) populations in western Japan. Conserv Genet 5:311-323.
    • (2007) Conserv Genet , vol.5 , pp. 311-323
    • Ohnishi, N.1    Saitoh, T.2    Ishibashi, Y.3
  • 20
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada D, Crandall KA. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 21
    • 0032860013 scopus 로고    scopus 로고
    • Evolutionary genomics in Metazoa: The mitochondrial DNA as a model system
    • Saccone S, Giorgi CD, Gissi C. 1999. Evolutionary genomics in Metazoa: The mitochondrial DNA as a model system. Gene 238:195-209.
    • (1999) Gene , vol.238 , pp. 195-209
    • Saccone, S.1    Giorgi, C.D.2    Gissi, C.3
  • 22
    • 0031593240 scopus 로고    scopus 로고
    • Mammalian mitochondrial D-loop region structural analysis: Identification of new conserved sequences and their functional and evolutionary implications
    • Sbisà E, Tanzariello F, Reyes A, Pesole G, Saccone C. 1997. Mammalian mitochondrial D-loop region structural analysis: Identification of new conserved sequences and their functional and evolutionary implications. Gene 205:125-140.
    • (1997) Gene , vol.205 , pp. 125-140
    • Sbisà, E.1    Tanzariello, F.2    Reyes, A.3    Pesole, G.4    Saccone, C.5
  • 23
    • 0002298492 scopus 로고
    • The status and conservation of the bears of the world
    • Servheen C. 1990. The status and conservation of the bears of the world. Int Conf Bear Res Manage Monogr Ser 2:1-32.
    • (1990) Int Conf Bear Res Manage Monogr Ser , vol.2 , pp. 1-32
    • Servheen, C.1
  • 24
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16:1114-1116.
    • (1999) Mol Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 26
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res 24:4876-4882.
    • (1997) Nucl Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 27
    • 0019887587 scopus 로고
    • Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA
    • Walberg MW, Clayton DA. 1981. Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA. Nucl Acids Res 9:5411-5421.
    • (1981) Nucl Acids Res , vol.9 , pp. 5411-5421
    • Walberg, M.W.1    Clayton, D.A.2
  • 29
    • 0025899307 scopus 로고
    • Length and sequence variation in evening bat D-loop mtDNA
    • Wilkinson GS, Chapman AM. 1991. Length and sequence variation in evening bat D-loop mtDNA. Genetics 128:607-617.
    • (1991) Genetics , vol.128 , pp. 607-617
    • Wilkinson, G.S.1    Chapman, A.M.2
  • 30
    • 3042682593 scopus 로고    scopus 로고
    • Phylogeny of the bears (Ursidae) based on nuclear and mitochondrial genes
    • Yu L, Li QW, Ryder OA, Zhang YP. 2004. Phylogeny of the bears (Ursidae) based on nuclear and mitochondrial genes. Mol Phylogenet Evol 32:480-494.
    • (2004) Mol Phylogenet Evol , vol.32 , pp. 480-494
    • Yu, L.1    Li, Q.W.2    Ryder, O.A.3    Zhang, Y.P.4
  • 31
    • 37349066179 scopus 로고    scopus 로고
    • Analysis of complete mitochondrial genome sequences increases phylogenetic resolution of bears (Ursidae), a mammalian family that experienced rapid speciation
    • Yu L, Li YW, Ryder OA, Zhang YP. 2007. Analysis of complete mitochondrial genome sequences increases phylogenetic resolution of bears (Ursidae), a mammalian family that experienced rapid speciation. BMC Evol Biol. 7:198.
    • (2007) BMC Evol Biol , vol.7 , pp. 198
    • Yu, L.1    Li, Y.W.2    Ryder, O.A.3    Zhang, Y.P.4
  • 32
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucl Acids Res 31:3406-3415.
    • (2003) Nucl Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.