-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman D (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
2
-
-
0022274030
-
Animal mitochondrial DNA: An extreme example of genetic economy
-
Attardi G (1985) Animal mitochondrial DNA: An extreme example of genetic economy. Int Rev Cytol 93:93-148
-
(1985)
Int Rev Cytol
, vol.93
, pp. 93-148
-
-
Attardi, G.1
-
3
-
-
0035358999
-
Mitochondrial pseudogenes: Evolution's misplaced witnesses
-
Bensasson D, Zhang DX, Hartl D, Hewitt GM (2001) Mitochondrial pseudogenes: Evolution's misplaced witnesses. TEE 16 (http://tree.trends.com 0169-5347/01/$)
-
(2001)
TEE
, vol.16
-
-
Bensasson, D.1
Zhang, D.X.2
Hartl, D.3
Hewitt, G.M.4
-
4
-
-
0343340115
-
Mitochondrial genomic rearrangements in songbirds
-
Bensch A, Härlid A (2000) Mitochondrial genomic rearrangements in songbirds. Mol Biol Evol 17:107-113
-
(2000)
Mol Biol Evol
, vol.17
, pp. 107-113
-
-
Bensch, A.1
Härlid, A.2
-
5
-
-
0022979903
-
Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA
-
Brown G, Gadaleta G, Pepe G, Saccone C, Sbisà E (1986) Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA. J Mol Biol 192:503-511
-
(1986)
J Mol Biol
, vol.192
, pp. 503-511
-
-
Brown, G.1
Gadaleta, G.2
Pepe, G.3
Saccone, C.4
Sbisà, E.5
-
7
-
-
0034616188
-
Long-distance colonization and radiation in gekkonid lizards, Tarentola (Reptilia: Gekkonidae), revealed by mitochondrial DNA sequences
-
Carranza S, Arnold EN, Mateo JA, Lopez-Jurado LF (2000) Long-distance colonization and radiation in gekkonid lizards, Tarentola (Reptilia: Gekkonidae), revealed by mitochondrial DNA sequences. Proc R Soc Lond B 267:637-649
-
(2000)
Proc R Soc Lond B
, vol.267
, pp. 637-649
-
-
Carranza, S.1
Arnold, E.N.2
Mateo, J.A.3
Lopez-Jurado, L.F.4
-
8
-
-
0019978703
-
Replication of animal mitochondrial DNA
-
Clayton DA (1982) Replication of animal mitochondrial DNA. Cell 28:693-705
-
(1982)
Cell
, vol.28
, pp. 693-705
-
-
Clayton, D.A.1
-
9
-
-
0033635474
-
Slow rate of evolution in the mitochondrial control region of gulls (Aves: Laridae)
-
Crochet PA, Desmarais E (2000) Slow rate of evolution in the mitochondrial control region of gulls (Aves: Laridae). Mol Biol Evol 17:1797-1806
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1797-1806
-
-
Crochet, P.A.1
Desmarais, E.2
-
10
-
-
0012353175
-
Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences
-
Doda DA, Wright CT, Clayton DA (1981) Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences. Proc Natl Acad Sci USA 78:6116-6120
-
(1981)
Proc Natl Acad Sci USA
, vol.78
, pp. 6116-6120
-
-
Doda, D.A.1
Wright, C.T.2
Clayton, D.A.3
-
11
-
-
0030817871
-
The mitochondrial control region of Cervidae: Evolutionary patterns and phylogenetic contents
-
Douzery E, Randi E (1997) The mitochondrial control region of Cervidae: Evolutionary patterns and phylogenetic contents. Mol Biol Evol 14:1154-1166
-
(1997)
Mol Biol Evol
, vol.14
, pp. 1154-1166
-
-
Douzery, E.1
Randi, E.2
-
12
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihopd approach
-
Felsenstein J (1981) Evolutionary trees from DNA sequences: A maximum likelihopd approach. J Mol Evol 17:368-376
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
13
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
14
-
-
0030464460
-
SEAVIEW and PHYLO_-WIN: Two graphic tools for sequence alignment and molecular phylogeny
-
Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_-WIN: Two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12:543-548
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 543-548
-
-
Galtier, N.1
Gouy, M.2
Gautier, C.3
-
16
-
-
0034782552
-
Re-evaluation of 16S ribosomal RNA variation in Bufo (Anura: Amphibia)
-
Harris DJ (2001) Re-evaluation of 16S ribosomal RNA variation in Bufo (Anura: Amphibia). Mol Phylogenet Evol 19:326-329
-
(2001)
Mol Phylogenet Evol
, vol.19
, pp. 326-329
-
-
Harris, D.J.1
-
17
-
-
0036526267
-
Reassessment of comparative genetic distance in reptiles from the mitochondrial cytochrome b gene
-
in press
-
Harris DJ (2002) Reassessment of comparative genetic distance in reptiles from the mitochondrial cytochrome b gene. Herpetol J (in press)
-
(2002)
Herpetol J
-
-
Harris, D.J.1
-
18
-
-
0033967817
-
Intragenomic variation within ITS1 and ITS2 of freshwater crayfishes (Decapoda: Cambaridae): Implications for phylogenetic and microsatelitte studies
-
Harris DJ, Crandall KA (2000) Intragenomic variation within ITS1 and ITS2 of freshwater crayfishes (Decapoda: Cambaridae): Implications for phylogenetic and microsatelitte studies. Mol Biol Evol 17:284-291
-
(2000)
Mol Biol Evol
, vol.17
, pp. 284-291
-
-
Harris, D.J.1
Crandall, K.A.2
-
19
-
-
0032558716
-
Relationships of lacertid lizards (Reptilia: lacertidae) estimated from mitochondrial DNA sequences and morphology
-
Harris DJ, Arnold EN, Thomas RH (1998) Relationships of lacertid lizards (Reptilia: lacertidae) estimated from mitochondrial DNA sequences and morphology. Proc R Soc Lond B 265:1939-1948
-
(1998)
Proc R Soc Lond B
, vol.265
, pp. 1939-1948
-
-
Harris, D.J.1
Arnold, E.N.2
Thomas, R.H.3
-
20
-
-
0028341048
-
Rapid evolution of a heteroplasmic repetitive sequence in the mitochondrial DNA control region of carnivores
-
Hoelzel AR, Lopez JV, Dover GA, O'Brien SJ (1994) Rapid evolution of a heteroplasmic repetitive sequence in the mitochondrial DNA control region of carnivores. J Mol Evol 39:191-199
-
(1994)
J Mol Evol
, vol.39
, pp. 191-199
-
-
Hoelzel, A.R.1
Lopez, J.V.2
Dover, G.A.3
O'Brien, S.J.4
-
21
-
-
0031436890
-
Phylogenetic estimation and hypothesis testing using maximum likelihood
-
Hulsenbeck JP, Crandall KA (1997) Phylogenetic estimation and hypothesis testing using maximum likelihood. Annu Rev Ecol Syst 28:437-466
-
(1997)
Annu Rev Ecol Syst
, vol.28
, pp. 437-466
-
-
Hulsenbeck, J.P.1
Crandall, K.A.2
-
22
-
-
0035932330
-
The mitochondrial genomes of the iguana (Iguana iguana) and the caiman (Caiman crocodylus): Implications for amniote phylogeny
-
Janke A, Erpenbeck D, Nilsson M, Arnason U (2001) The mitochondrial genomes of the iguana (Iguana iguana) and the caiman (Caiman crocodylus): Implications for amniote phylogeny. Proc R Soc Lond B Biol Sci 268:623-631
-
(2001)
Proc R Soc Lond B Biol Sci
, vol.268
, pp. 623-631
-
-
Janke, A.1
Erpenbeck, D.2
Nilsson, M.3
Arnason, U.4
-
23
-
-
0027482104
-
Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics
-
Kumazawa Y, Nishida M (1993) Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics. J Mol Evol 37:380-398
-
(1993)
J Mol Evol
, vol.37
, pp. 380-398
-
-
Kumazawa, Y.1
Nishida, M.2
-
24
-
-
0029096503
-
Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers
-
Kumazawa Y, Nishida M (1995) Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers. Mol Biol Evol 12:759-772
-
(1995)
Mol Biol Evol
, vol.12
, pp. 759-772
-
-
Kumazawa, Y.1
Nishida, M.2
-
25
-
-
0033013699
-
Complete mitochondrial DNA sequences of the green turtle and blue-tailed skink: Statistical evidence for archosaurian affinity of turtles
-
Kumazawa Y, Nishida M (1999) Complete mitochondrial DNA sequences of the green turtle and blue-tailed skink: Statistical evidence for archosaurian affinity of turtles. Mol Biol Evol 16:784-792
-
(1999)
Mol Biol Evol
, vol.16
, pp. 784-792
-
-
Kumazawa, Y.1
Nishida, M.2
-
26
-
-
0031696736
-
The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions
-
Kumazawa Y, Ota H, Nishida M, Ozawa T (1998) The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions. Genetics 150:313-329
-
(1998)
Genetics
, vol.150
, pp. 313-329
-
-
Kumazawa, Y.1
Ota, H.2
Nishida, M.3
Ozawa, T.4
-
27
-
-
0028363062
-
Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat
-
Lopez JV, Yuhki N, Masuda R, Modi W, O'Brien SJ (1994) Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat. J Mol Evol 39:174-190
-
(1994)
J Mol Evol
, vol.39
, pp. 174-190
-
-
Lopez, J.V.1
Yuhki, N.2
Masuda, R.3
Modi, W.4
O'Brien, S.J.5
-
28
-
-
0032211421
-
Mitochondrial DNA variable number of tandem repeats (VNTRs): Utility and problems in molecular ecology
-
Lunt DH, Whipple LE, Hyman BC (1998) Mitochondrial DNA variable number of tandem repeats (VNTRs): utility and problems in molecular ecology. Mol Ecol 7:1441-1455
-
(1998)
Mol Ecol
, vol.7
, pp. 1441-1455
-
-
Lunt, D.H.1
Whipple, L.E.2
Hyman, B.C.3
-
29
-
-
0031012089
-
Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome
-
Macey JR, Larson A, Ananjeva NB, Fang Z, Papenfuss T (1997a) Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome. Mol Biol Evol 14:91-104
-
(1997)
Mol Biol Evol
, vol.14
, pp. 91-104
-
-
Macey, J.R.1
Larson, A.2
Ananjeva, N.B.3
Fang, Z.4
Papenfuss, T.5
-
30
-
-
0031031728
-
Replication slippage may cause parallel evolution in the secondary structures of mitochondrial transfer RNAs
-
Macey JR, Larson A, Ananjeva NB, Papenfuss T (1997b) Replication slippage may cause parallel evolution in the secondary structures of mitochondrial transfer RNAs. Mol Bio Evol 14:30-39
-
(1997)
Mol Bio Evol
, vol.14
, pp. 30-39
-
-
Macey, J.R.1
Larson, A.2
Ananjeva, N.B.3
Papenfuss, T.4
-
31
-
-
0032940104
-
Microevolution of the mitochondrial DNA control region in the Japanese brown bear (Ursus arctos) population
-
Matsuhashi T, Masuda R, Mano T, Yoshida MC (1999) Microevolution of the mitochondrial DNA control region in the Japanese brown bear (Ursus arctos) population. Mol Biol Evol 16:676-684
-
(1999)
Mol Biol Evol
, vol.16
, pp. 676-684
-
-
Matsuhashi, T.1
Masuda, R.2
Mano, T.3
Yoshida, M.C.4
-
32
-
-
0029955048
-
RNAdraw: An integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows
-
Matzura O, Wennborg A (1996) RNAdraw: an integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows. Comput Appl Biosci 12:247-249
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 247-249
-
-
Matzura, O.1
Wennborg, A.2
-
33
-
-
0023005457
-
Tandem duplications of D-loop and ribosomal RNA sequences in lizard mitochondrial DNA
-
Moritz C, Brown WM (1986) Tandem duplications of D-loop and ribosomal RNA sequences in lizard mitochondrial DNA. Science 233:1425-1427
-
(1986)
Science
, vol.233
, pp. 1425-1427
-
-
Moritz, C.1
Brown, W.M.2
-
34
-
-
0034447794
-
Molecular biogeography of the Mediterranean genera Podarcis and Teira (Reptilia, Lacertidae)
-
Oliverio M, Bologna MA, Mariottini P (2001) Molecular biogeography of the Mediterranean genera Podarcis and Teira (Reptilia, Lacertidae). J Biogeogr 27:1403-1420
-
(2001)
J Biogeogr
, vol.27
, pp. 1403-1420
-
-
Oliverio, M.1
Bologna, M.A.2
Mariottini, P.3
-
35
-
-
0036134760
-
Using secondary structure to identify ribosomal Numts: Cautionary examples from the human genome
-
Olson LE, Yoder AD (2002) Using secondary structure to identify ribosomal Numts: Cautionary examples from the human genome. Mol Biol Evol 19:93-100
-
(2002)
Mol Biol Evol
, vol.19
, pp. 93-100
-
-
Olson, L.E.1
Yoder, A.D.2
-
36
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
Posada D, Crandall KA (1998) MODELTEST: Testing the model of DNA substitution. Bioinfomatics 14:817-818
-
(1998)
Bioinfomatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
37
-
-
0031666359
-
Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris
-
Randi E, Lucchini V (1998) Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris. J Mol Evol 47:449-462
-
(1998)
J Mol Evol
, vol.47
, pp. 449-462
-
-
Randi, E.1
Lucchini, V.2
-
38
-
-
0023545213
-
Structural elements highly preserved during the evolution of the D-Loop containing region in vertebrate mitochondrial DNA
-
Saccone C, Attimonelli MA, Sbisà E (1987) Structural elements highly preserved during the evolution of the D-Loop containing region in vertebrate mitochondrial DNA. J Mol Evol 26:205-211
-
(1987)
J Mol Evol
, vol.26
, pp. 205-211
-
-
Saccone, C.1
Attimonelli, M.A.2
Sbisà, E.3
-
39
-
-
0033840788
-
Dynamics and phylogenetic implications of mtDNA control region sequences in New World jays (Aves: Corvidae)
-
Saunders MA, Edwards SV (2000) Dynamics and phylogenetic implications of mtDNA control region sequences in New World jays (Aves: Corvidae). J Mol Evol 51:97-109
-
(2000)
J Mol Evol
, vol.51
, pp. 97-109
-
-
Saunders, M.A.1
Edwards, S.V.2
-
40
-
-
0034119265
-
mtDNA tandem repeats in domestic dogs and wolves: Mutation mechanism studied by analysis of the sequence of imperfect repeats
-
Savolainen P, Arvestad L, Lundeberg J (2000) mtDNA tandem repeats in domestic dogs and wolves: Mutation mechanism studied by analysis of the sequence of imperfect repeats. Mol Biol Evol 17:474-488
-
(2000)
Mol Biol Evol
, vol.17
, pp. 474-488
-
-
Savolainen, P.1
Arvestad, L.2
Lundeberg, J.3
-
41
-
-
0031593240
-
Mammalian mitochondrial D-loop region structural analysis: Identification of new conserved sequences and their functional and evolutionary implications
-
Sbisà E, Tanzariello F, Reyes A, Pesole G, Saccone C (1997) Mammalian mitochondrial D-loop region structural analysis: Identification of new conserved sequences and their functional and evolutionary implications. Gene 205:125-140
-
(1997)
Gene
, vol.205
, pp. 125-140
-
-
Sbisà, E.1
Tanzariello, F.2
Reyes, A.3
Pesole, G.4
Saccone, C.5
-
42
-
-
0029910524
-
Character congruence and phylogenetic signal in molecular and morphological data sets: A case study in the living iguanas (Squamata, Iguanidae)
-
Sites JL Jr, Davis S, Guerra T, Iverson J, Snell H (1996) Character congruence and phylogenetic signal in molecular and morphological data sets: A case study in the living iguanas (Squamata, Iguanidae). Mol Biol Evol 13:1087-1105
-
(1996)
Mol Biol Evol
, vol.13
, pp. 1087-1105
-
-
Sites J.L., Jr.1
Davis, S.2
Guerra, T.3
Iverson, J.4
Snell, H.5
-
44
-
-
0036073133
-
Pattern of organization of human mitochondrial pseudogenes in the nuclear genome
-
Woischnik M, Moraes CT (2002) Pattern of organization of human mitochondrial pseudogenes in the nuclear genome. Genome Res 12:885-893
-
(2002)
Genome Res
, vol.12
, pp. 885-893
-
-
Woischnik, M.1
Moraes, C.T.2
-
45
-
-
0032564364
-
Complete mitochondrial genome suggests diapsid affinities of turtles
-
Zardoya R, Meyer A (1998) Complete mitochondrial genome suggests diapsid affinities of turtles. Proc Nat Acad Sci USA 95:14226-14231
-
(1998)
Proc Nat Acad Sci USA
, vol.95
, pp. 14226-14231
-
-
Zardoya, R.1
Meyer, A.2
-
46
-
-
0002287019
-
Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
-
Barciszewski J, Clark BFC (eds). Kluwer Academic, Dordrecht
-
Zuker M, Mathews DH, Turner DH (1999) Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide. In: Barciszewski J, Clark BFC (eds) RNA biochemistry and biotechnology NATO ASI Series. Kluwer Academic, Dordrecht, pp 11-43
-
(1999)
RNA Biochemistry and Biotechnology NATO ASI Series
, pp. 11-43
-
-
Zuker, M.1
Mathews, D.H.2
Turner, D.H.3
|