-
1
-
-
0031793928
-
Iterated profile searches with PSI-BLAST\a tool for discovery in protein databases
-
Altschul SF, Koonin EV. 1998. Iterated profile searches with PSI-BLAST\a tool for discovery in protein databases. Trends Biochem Sci. 23:444.
-
(1998)
Trends Biochem Sci.
, vol.23
, pp. 444
-
-
Altschul, S.F.1
Koonin, E.V.2
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0029832927
-
Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
-
Barns SM, Delwiche CF, Palmer JD, Pace NR. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc Natl Acad Sci\USA. 93:9188-9193
-
(1996)
Proc Natl Acad Sci\USA.
, vol.93
, pp. 9188-9193
-
-
Barns, S.M.1
Delwiche, C.F.2
Palmer, J.D.3
Pace, N.R.4
-
4
-
-
20044375499
-
Transfer RNA modification
-
Böck A, Curtis R, Kaper JB, Neidhardt FC, Nyström T, Squires CL, editors. Escherichia coliand Salmonella Washington (DC): ASM Press. [cited 2010 April 29] Available from
-
Björk GR, Hagervall TG. 2005. Transfer RNA modification. In: Böck A, Curtis R, Kaper JB, Neidhardt FC, Nyström T, Squires CL, editors. Escherichia coliand Salmonella. Cellular and molecular biology. Washington (DC): ASM Press. [cited 2010 April 29]. Available from: http://www.ecosal.org.
-
(2005)
Cellular and Molecular Biology
-
-
Björk, G.R.1
Hagervall, T.G.2
-
5
-
-
0035863196
-
A primordial tRNA modification required for the evolution of lifë
-
Björk GR, Jacobsson K, Nilsson K, Johansson MJ, Byström AS, Persson OP. 2001. A primordial tRNA modification required for the evolution of lifë EMBO J. 20:231-239
-
(2001)
EMBO J.
, vol.20
, pp. 231-239
-
-
Björk, G.R.1
Jacobsson, K.2
Nilsson, K.3
Johansson, M.J.4
Byström, A.S.5
Persson, O.P.6
-
6
-
-
0015926792
-
Isolation and structure determination of the fluorescent base from bovine liver phenylalanine transfer ribonucleic acid
-
Blobstein SH, Grunberger D, Weinstein IB, Nakanishi K. 1973. Isolation and structure determination of the fluorescent base from bovine liver phenylalanine transfer ribonucleic acid. Biochemistry 12:188-193
-
(1973)
Biochemistry
, vol.12
, pp. 188-193
-
-
Blobstein, S.H.1
Grunberger, D.2
Weinstein, I.B.3
Nakanishi, K.4
-
7
-
-
39149118031
-
Mesophilic crenarchaeota: Proposal for a third archaeal phylum, the Thaumarchaeota
-
Brochier-Armanet C, Boussau B, Gribaldo S, Forterre P. 2008. Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol. 6:245.
-
(2008)
Nat Rev Microbiol.
, vol.6
, pp. 245
-
-
Brochier-Armanet, C.1
Boussau, B.2
Gribaldo, S.3
Forterre, P.4
-
8
-
-
0033729437
-
Phylogenomic analysis of 16S rRNA:(guanine-N2) methyltransferases suggests new family members and reveals highly conserved motifs and a domain structure similar to other nucleic acid amino-methyltransferases
-
Bujnicki JM. 2000. Phylogenomic analysis of 16S rRNA:(guanine-N2) methyltransferases suggests new family members and reveals highly conserved motifs and a domain structure similar to other nucleic acid amino- methyltransferases. FASEB J. 14:2365-2368
-
(2000)
FASEB J.
, vol.14
, pp. 2365-2368
-
-
Bujnicki, J.M.1
-
9
-
-
0020362952
-
Chromosomal location and cloning of the gene (trmD) responsible for the synthesis of tRNA (m1G) methyltransferase in Escherichia coli K-12
-
Byström AS, Björk GR. 1982. Chromosomal location and cloning of the gene (trmD) responsible for the synthesis of tRNA (m1G) methyltransferase in Escherichia coli K-12. Mol Gen Genet. 188: 440-446
-
(1982)
Mol Gen Genet.
, vol.188
, pp. 440-446
-
-
Byström, A.S.1
Björk, G.R.2
-
10
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17:540-552
-
(2000)
Mol Biol Evol.
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
12
-
-
58149512792
-
The archaebacterial origin of eukaryotes
-
Cox CJ, Foster PG, Hirt RP, Harris SR, Embley TM. 2008. The archaebacterial origin of eukaryotes. Proc Natl Acad Sci\USA. 105:20356-20361
-
(2008)
Proc Natl Acad Sci\USA.
, vol.105
, pp. 20356-20361
-
-
Cox, C.J.1
Foster, P.G.2
Hirt, R.P.3
Harris, S.R.4
Embley, T.M.5
-
13
-
-
0023286030
-
Enzymatic conversion of guanosine 3' adjacent to the anticodon of yeast tRNAPhe to N1-methylguanosine and the wye nucleoside: Dependence on the anticodon sequence
-
Droogmans L, Grosjean H. 1987. Enzymatic conversion of guanosine 3' adjacent to the anticodon of yeast tRNAPhe to N1-methylguanosine and the wye nucleoside: dependence on the anticodon sequence. EMBO J. 6:477-483
-
(1987)
EMBO J.
, vol.6
, pp. 477-483
-
-
Droogmans, L.1
Grosjean, H.2
-
14
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32: 1792-1797
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
15
-
-
0025897378
-
Posttranscriptional modification of tRNA in thermophilic archaea (Archaebacteria)
-
Edmonds CG, Crain PF, Gupta R, Hashizume T, Hocart CH, Kowalak JA, Pomerantz SC, Stetter KO, McCloskey JA. 1991. Posttranscriptional modification of tRNA in thermophilic archaea (Archaebacteria). J Bacteriol. 173:3138-3148
-
(1991)
J Bacteriol.
, vol.173
, pp. 3138-3148
-
-
Edmonds, C.G.1
Crain, P.F.2
Gupta, R.3
Hashizume, T.4
Hocart, C.H.5
Kowalak, J.A.6
Pomerantz, S.C.7
Stetter, K.O.8
McCloskey, J.A.9
-
16
-
-
0019935329
-
Quantitative enzymatic hydrolysis of tRNAs: Reversed-phase high-performance liquid chromatography of tRNA nucleosides
-
Gehrke CW, Kuo KC, McCune RA, Gerhardt KO, Agris PF. 1982. Quantitative enzymatic hydrolysis of tRNAs: reversed-phase high-performance liquid chromatography of tRNA nucleosides. J Chromatogr. 230:297-308
-
(1982)
J Chromatogr.
, vol.230
, pp. 297-308
-
-
Gehrke, C.W.1
Kuo, K.C.2
McCune, R.A.3
Gerhardt, K.O.4
Agris, P.F.5
-
17
-
-
0025044901
-
Chemical synthesis and spontaneous glycosidic hydrolysis of 3-methyl-2'-deoxyguanosine and 2'-deoxywyosine [1]
-
Golankiewicz B, Ostrowski T, Folkman W. 1990. Chemical synthesis and spontaneous glycosidic hydrolysis of 3-methyl-2'-deoxyguanosine and 2'-deoxywyosine [1]. Nucleic Acids Res. 18:4779-4782
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 4779-4782
-
-
Golankiewicz, B.1
Ostrowski, T.2
Folkman, W.3
-
18
-
-
0022423294
-
Kinetics and mechanism of the acid-catalyzed hydrolysis of a hypermodified nucleoside wyosine and its 5'-monophosphate1
-
Golankiewicz B, Zielonacka-Lis E, Folkman W. 1985. Kinetics and mechanism of the acid-catalyzed hydrolysis of a hypermodified nucleoside wyosine and its 5'-monophosphate1. Nucleic Acids Res. 13:2443-2449
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 2443-2449
-
-
Golankiewicz, B.1
Zielonacka-Lis, E.2
Folkman, W.3
-
19
-
-
34748889928
-
Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis
-
Goto-Ito S, Ishii R, Ito T, Shibata R, Fusatomi E, Sekine SI, Bessho Y, Yokoyama S. 2007. Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis. Acta Crystallogr D Biol Crystallogr. 63:1059-1068
-
(2007)
Acta Crystallogr D Biol Crystallogr.
, vol.63
, pp. 1059-1068
-
-
Goto-Ito, S.1
Ishii, R.2
Ito, T.3
Shibata, R.4
Fusatomi, E.5
Sekine, S.I.6
Bessho, Y.7
Yokoyama, S.8
-
20
-
-
51349095086
-
1G37)methyltransferase aTrm5
-
Goto-Ito S, Ito T, Ishii R, Muto Y, Bessho Y, Yokoyama S. 2008. Crystal structure of archaeal tRNA(m1G37)methyltransferase aTrm5. Proteins 72:1274-1289
-
(2008)
Proteins
, vol.72
, pp. 1274-1289
-
-
Goto-Ito, S.1
Ito, T.2
Ishii, R.3
Muto, Y.4
Bessho, Y.5
Yokoyama, S.6
-
21
-
-
70349813956
-
Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation
-
Goto-Ito S, Ito T, Kuratani M, Bessho Y, Yokoyama S. 2009. Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation. Nat Struct Mol Biol. 16:1109.
-
(2009)
Nat Struct Mol Biol.
, vol.16
, pp. 1109
-
-
Goto-Ito, S.1
Ito, T.2
Kuratani, M.3
Bessho, Y.4
Yokoyama, S.5
-
22
-
-
0032961270
-
ESPript: Analysis of multiple sequence alignments in PostScript
-
Gouet P, Courcelle E, Stuart DI, Metoz F. 1999. ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15:305-308
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
-
24
-
-
0025039614
-
Guanosine modifications in runoff transcripts of synthetic transfer RNA-Phe genes microinjected into Xenopus oocytes
-
Grosjean H, Droogmans L, Giegé R, Uhlenbeck OC. 1990. Guanosine modifications in runoff transcripts of synthetic transfer RNA-Phe genes microinjected into Xenopus oocytes. Biochim Biophys Acta. 1050:267-273
-
(1990)
Biochim Biophys Acta.
, vol.1050
, pp. 267-273
-
-
Grosjean, H.1
Droogmans, L.2
Giegé, R.3
Uhlenbeck, O.C.4
-
25
-
-
3142766402
-
Detection and quantification of modified nucleotides in RNA using thin-layer chromatography
-
Gott J, editor Totowa (NJ) Humana Press
-
Grosjean H, Keith G, Droogmans L. 2004. Detection and quantification of modified nucleotides in RNA using thin-layer chromatography. In: Gott J, editor. Methods in molecular biology. Totowa (NJ): Humana Press. p. 357-391
-
(2004)
Methods in Molecular Biology
, pp. 357-391
-
-
Grosjean, H.1
Keith, G.2
Droogmans, L.3
-
26
-
-
0021153752
-
Halobacterium volcanii tRNAs: Identification of 41 tRNAs covering all amino acids, and the sequences of 33 Class i tRNAs
-
Gupta R. 1984. Halobacterium volcanii tRNAs: identification of 41 tRNAs covering all amino acids, and the sequences of 33 Class I tRNAs. J Biol Chem. 259:9461-9471
-
(1984)
J Biol Chem.
, vol.259
, pp. 9461-9471
-
-
Gupta, R.1
-
27
-
-
0022529031
-
Transfer RNAs of Halobacterium volcanii: Sequences of five leucine and three serine tRNAs
-
Gupta RC. 1986. Transfer RNAs of Halobacterium volcanii: sequences of five leucine and three serine tRNAs. System Appl Microbiol. 7:102-105
-
(1986)
System Appl Microbiol.
, vol.7
, pp. 102-105
-
-
Gupta, R.C.1
-
28
-
-
0037007636
-
A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
-
Huber H, Hohn MJ, Rachel R, Fuchs T, Wimmer VC, Stetter KO. 2002. A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature 417:63.
-
(2002)
Nature
, vol.417
, pp. 63
-
-
Huber, H.1
Hohn, M.J.2
Rachel, R.3
Fuchs, T.4
Wimmer, V.C.5
Stetter, K.O.6
-
29
-
-
13444259388
-
TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics
-
Jobb G, von Haeseler A, Strimmer K. 2004. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol. 4:18.
-
(2004)
BMC Evol Biol.
, vol.4
, pp. 18
-
-
Jobb, G.1
Von Haeseler, A.2
Strimmer, K.3
-
30
-
-
58149191272
-
TRNAdb 2009: Compilation of tRNA sequences and tRNA genes
-
Jühling F, Mörl M, Hartmann RK, Sprinzl M, Stadler PF, Pütz J. 2009. tRNAdb 2009: compilation of tRNA sequences and tRNA genes. Nucleic Acids Res. 37:D159-D162
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Jühling, F.1
Mörl, M.2
Hartmann, R.K.3
Sprinzl, M.4
Stadler, P.F.5
Pütz, J.6
-
31
-
-
22144472569
-
A novel methyltransferase required for the formation of the hypermodified nucleoside wybutosine in eucaryotic tRNA
-
Kalhor HR, Penjwini M, Clarke S. 2005. A novel methyltransferase required for the formation of the hypermodified nucleoside wybutosine in eucaryotic tRNA. Bioch. Bioph Res Com. 334:433-440
-
(2005)
Bioch. Bioph Res Com.
, vol.334
, pp. 433-440
-
-
Kalhor, H.R.1
Penjwini, M.2
Clarke, S.3
-
32
-
-
0017275632
-
Structure of wye (Yt base) and wyosine (Yt) from Torulopsis utilis phenylalanine transfer ribonucleic acid
-
Kasai H, Goto M, Ikeda K, Zama M, Mizuno Y, Takemura S, Matsuura S, Sugimoto T, Goto T. 1976. Structure of wye (Yt base) and wyosine (Yt) from Torulopsis utilis phenylalanine transfer ribonucleic acid. Biochemistry 15:898-904
-
(1976)
Biochemistry
, vol.15
, pp. 898-904
-
-
Kasai, H.1
Goto, M.2
Ikeda, K.3
Zama, M.4
Mizuno, Y.5
Takemura, S.6
Matsuura, S.7
Sugimoto, T.8
Goto, T.9
-
33
-
-
0023126848
-
Structure determination of a new fluorescent tricyclic nucleoside from archaebacterial tRNA
-
McCloskey JA, Crain PF, Edmonds CG, Gupta R, Hashizume T, Phillipson DW, Stetter KO. 1987. Structure determination of a new fluorescent tricyclic nucleoside from archaebacterial tRNA Nucleic Acids Res. 15:683-693
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 683-693
-
-
McCloskey, J.A.1
Crain, P.F.2
Edmonds, C.G.3
Gupta, R.4
Hashizume, T.5
Phillipson, D.W.6
Stetter, K.O.7
-
34
-
-
0035890653
-
Post-transcriptional modification in archaeal tRNAs: Identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methano-coccales
-
McCloskey JA, Graham DE, Zhou S, Crain PF, Ibba M, Konisky J, Soll D, Olsen GJ. 2001. Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methano-coccales. Nucleic Acids Res. 29:4699-4706
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4699-4706
-
-
McCloskey, J.A.1
Graham, D.E.2
Zhou, S.3
Crain, P.F.4
Ibba, M.5
Konisky, J.6
Soll, D.7
Olsen, G.J.8
-
35
-
-
0006726473
-
Posttranscriptional modification of transfer RNA in the submarine hyperthermophile Pyrolobus fumarii
-
McCloskey JA, Liu X-H, Crain PF, Bruenger E, Guymon R, Hashizume T, Stetter KO. 2000. Posttranscriptional modification of transfer RNA in the submarine hyperthermophile Pyrolobus fumarii. Nucleic Acids Symp Ser (Oxf). 44:267-268
-
(2000)
Nucleic Acids Symp ser (Oxf).
, vol.44
, pp. 267-268
-
-
McCloskey, J.A.1
Liu, X.-H.2
Crain, P.F.3
Bruenger, E.4
Guymon, R.5
Hashizume, T.6
Stetter, K.O.7
-
36
-
-
33646778150
-
Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA
-
Noma A, Kirino Y, Ikeuchi Y, Suzuki T. 2006. Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA. EMBO J. 25:2142-2154
-
(2006)
EMBO J.
, vol.25
, pp. 2142-2154
-
-
Noma, A.1
Kirino, Y.2
Ikeuchi, Y.3
Suzuki, T.4
-
37
-
-
0042337212
-
Influence of temperature on tRNA modification in Archaea: Methanococcoides burtonii (Optimum Growth Temperature [Topt], 23°C) and Stetteria hydrogenophila (Topt, 95°C)
-
Noon KR, Guymon R, Crain PF, McCloskey JA, Thomm M, Lim J, Cavicchioli R. 2003. Influence of temperature on tRNA modification in Archaea: Methanococcoides burtonii (Optimum Growth Temperature [Topt], 23°C) and Stetteria hydrogenophila (Topt, 95°C). J Bacteriol. 185:5483-5490
-
(2003)
J Bacteriol.
, vol.185
, pp. 5483-5490
-
-
Noon, K.R.1
Guymon, R.2
Crain, P.F.3
McCloskey, J.A.4
Thomm, M.5
Lim, J.6
Cavicchioli, R.7
-
38
-
-
0037398732
-
Missing genes in metabolic pathways: A comparative genomics approach
-
Osterman A, Overbeek R. 2003. Missing genes in metabolic pathways: a comparative genomics approach. Curr Opin Chem Biol. 7:238-251
-
(2003)
Curr Opin Chem Biol.
, vol.7
, pp. 238-251
-
-
Osterman, A.1
Overbeek, R.2
-
39
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
(38 co-authors)
-
Overbeek R, Begley T, Butler RM, et al. (38 co-authors). 2005. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 33:5691-5702
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
-
40
-
-
0027494836
-
MUST, a computer package of management utilities for sequences and trees
-
Philippe H. 1993. MUST, a computer package of management utilities for sequences and trees. Nucleic Acids Res. 21:5264-5272
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 5264-5272
-
-
Philippe, H.1
-
41
-
-
57349131670
-
Biosynthesis of 7-deazaguanosine-modified tRNA nucleosides: A new role for GTP Cyclohydrolase i
-
Phillips G, El Yacoubi B, Lyons B, Alvarez S, Iwata-Reuyl D, de Crecy-Lagard V. 2008. Biosynthesis of 7-deazaguanosine-modified tRNA nucleosides: a new role for GTP Cyclohydrolase I. J Bacteriol. 190:7876-7884
-
(2008)
J Bacteriol.
, vol.190
, pp. 7876-7884
-
-
Phillips, G.1
El Yacoubi, B.2
Lyons, B.3
Alvarez, S.4
Iwata-Reuyl, D.5
De Crecy-Lagard, V.6
-
42
-
-
34547751897
-
Supertrees disentangle the chimerical origin of eukaryotic genomes
-
Pisani D, Cotton JA, McInerney JO. 2007. Supertrees disentangle the chimerical origin of eukaryotic genomes. Mol Biol Evol. 24:1752-1760
-
(2007)
Mol Biol Evol.
, vol.24
, pp. 1752-1760
-
-
Pisani, D.1
Cotton, J.A.2
McInerney, J.O.3
-
43
-
-
0025612935
-
Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry
-
Pomerantz SC, McCloskey JA. 1990. Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry. Methods Enzymol. 193:796-824
-
(1990)
Methods Enzymol.
, vol.193
, pp. 796-824
-
-
Pomerantz, S.C.1
McCloskey, J.A.2
-
44
-
-
0037709211
-
Studies on polynucleotides, LXVIII. The primary structure of yeast phenylalanine transferRNA
-
Rajbhandary UL, Chang SH, Stuart A, Faulkner RD, Hoskinson RM, Khorana HG. 1967. Studies on polynucleotides, LXVIII. The primary structure of yeast phenylalanine transferRNA. Proc Natl Acad Sci\USA. 57:751-758
-
(1967)
Proc Natl Acad Sci\USA.
, vol.57
, pp. 751-758
-
-
Rajbhandary, U.L.1
Chang, S.H.2
Stuart, A.3
Faulkner, R.D.4
Hoskinson, R.M.5
Khorana, H.G.6
-
45
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
46
-
-
66249132046
-
2 fixation and methylation by wybutosine synthesizing enzyme TYW4
-
Suzuki Y, Noma A, Suzuki T, Ishitani R, Nureki O. 2009. Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4. Nucleic Acids Res. 37:2910-2925
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 2910-2925
-
-
Suzuki, Y.1
Noma, A.2
Suzuki, T.3
Ishitani, R.4
Nureki, O.5
-
47
-
-
34548504334
-
Crystal structure of the radical SAM enzyme catalyzing tricyclic modified base formation in tRNA
-
Suzuki Y, Noma A, Suzuki T, Senda M, Senda T, Ishitani R, Nureki O. 2007. Crystal structure of the radical SAM enzyme catalyzing tricyclic modified base formation in tRNA. J Mol Biol. 372:1204.
-
(2007)
J Mol Biol.
, vol.372
, Issue.1204
-
-
Suzuki, Y.1
Noma, A.2
Suzuki, T.3
Senda, M.4
Senda, T.5
Ishitani, R.6
Nureki, O.7
-
48
-
-
0016169078
-
Nucleotide sequence of the anticodon region of Torulopsis phenylalanine transfer RNA
-
Takemura S, Kasai H, Goto M. 1974. Nucleotide sequence of the anticodon region of Torulopsis phenylalanine transfer RNA.J. Biochem. 75:1169-1172
-
(1974)
J. Biochem.
, vol.75
, pp. 1169-1172
-
-
Takemura, S.1
Kasai, H.2
Goto, M.3
-
49
-
-
0014428762
-
A specific modification next to the anticodon of phenylalanine transfer ribonucleic acid
-
Thiebe R, Zachau HG. 1968. A specific modification next to the anticodon of phenylalanine transfer ribonucleic acid. Eur J Biochem. 5:546-555
-
(1968)
Eur J Biochem.
, vol.5
, pp. 546-555
-
-
Thiebe, R.1
Zachau, H.G.2
-
50
-
-
0015245541
-
Study on the properties and structure of the modified base Y\+ of yeast tRNA Phe
-
Thiebe R, Zachau HG, Baczynskyj L, Biemann K, Sonnenbichler J. 1971. Study on the properties and structure of the modified base Y\+ of yeast tRNA Phe. Biochim Biophys Acta. 240:163-169
-
(1971)
Biochim Biophys Acta.
, vol.240
, pp. 163-169
-
-
Thiebe, R.1
Zachau, H.G.2
Baczynskyj, L.3
Biemann, K.4
Sonnenbichler, J.5
-
51
-
-
70349453560
-
Structural basis of AdoMet-dependent aminocarboxy-propyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2
-
Umitsu M, Nishimasu H, Noma A, Suzuki T, Ishitani R, Nureki O. 2009. Structural basis of AdoMet-dependent aminocarboxy-propyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2. Proc Natl Acad Sci\USA. 106:15616-15621
-
(2009)
Proc Natl Acad Sci\USA.
, vol.106
, pp. 15616-15621
-
-
Umitsu, M.1
Nishimasu, H.2
Noma, A.3
Suzuki, T.4
Ishitani, R.5
Nureki, O.6
-
52
-
-
78649672783
-
Deciphering the complex enzymatic pathway for biosynthesis of wyosine derivatives in anticodon of tRNAPhe
-
Grosjean H, editor. DNA and RNA modification enzymes: structure, mechanism, function and evolution. Austin (TX)
-
Urbonavicius J, Droogmans L, Armengaud J, Grosjean H. 2009. Deciphering the complex enzymatic pathway for biosynthesis of wyosine derivatives in anticodon of tRNAPhe. In: Grosjean H, editor. DNA and RNA modification enzymes: structure, mechanism, function and evolution. Austin (TX): Landes Bioscience. p. 426-438
-
(2009)
Landes Bioscience
, pp. 426-438
-
-
Urbonavicius, J.1
Droogmans, L.2
Armengaud, J.3
Grosjean, H.4
-
53
-
-
27844508636
-
Discovery of a gene family critical to wyosine base formation in a subset of phenylalanine-specific transfer RNAs
-
Waas WF, de Crécy-Lagard V, Schimmel P. 2005. Discovery of a gene family critical to wyosine base formation in a subset of phenylalanine-specific transfer RNAs. J Biol Chem. 280:37616-37622
-
(2005)
J Biol Chem.
, vol.280
, pp. 37616-37622
-
-
Waas, W.F.1
De Crécy-Lagard, V.2
Schimmel, P.3
-
54
-
-
0035043572
-
A new simvastatin (mevinolin)-resistance marker from Haloarcula hispanica and a new Haloferax volcanii strain cured of plasmid pHV2
-
Wendoloski D, Ferrer C, Dyall-Smith ML. 2001. A new simvastatin (mevinolin)-resistance marker from Haloarcula hispanica and a new Haloferax volcanii strain cured of plasmid pHV2. Microbiology 147:959.
-
(2001)
Microbiology
, vol.147
, pp. 959
-
-
Wendoloski, D.1
Ferrer, C.2
Dyall-Smith, M.L.3
-
56
-
-
1342279425
-
Structures of two new "minimalist" modified nucleosides from archaeal tRNA
-
Zhou S, Sitaramaiah D, Noon KR, Guymon R, Hashizume T, McCloskey JA. 2004. Structures of two new "minimalist" modified nucleosides from archaeal tRNA. Bioorg Chem. 32:82-91
-
(2004)
Bioorg Chem.
, vol.32
, pp. 82-91
-
-
Zhou, S.1
Sitaramaiah, D.2
Noon, K.R.3
Guymon, R.4
Hashizume, T.5
McCloskey, J.A.6
-
57
-
-
1542679805
-
Tandem mass spectrometry for structure assignments of wye nucleosides from transfer RNA
-
Zhou S, Sitaramaiah D, Pomerantz SC, Crain PF, McCloskey JA. 2004. Tandem mass spectrometry for structure assignments of wye nucleosides from transfer RNA. Nucleosides Nucleotides Nucleic Acids. 23:41-50
-
(2004)
Nucleosides Nucleotides Nucleic Acids.
, vol.23
, pp. 41-50
-
-
Zhou, S.1
Sitaramaiah, D.2
Pomerantz, S.C.3
Crain, P.F.4
McCloskey, J.A.5
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