Discovery of a gene family critical to wyosine base formation in a subset of phenylalanine-specific transfer RNAs

Journal of Biological Chemistry

Volumn 280, Issue 45, 2005, Pages 37616-37622

  Waas, William F ^a   De Crécy Lagard, Valérie ^b   Schimmel, Paul ^a,b  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BIOSYNTHESIS; CYTOLOGY; ENZYME KINETICS; GENES; NITROGEN COMPOUNDS; NUCLEIC ACID SEQUENCES; PROTEINS; REACTION KINETICS; RNA;

BIOSYNTHETIC PROTEINS; CELL VIABILITY; FLUORESCENT TRICYCLIC MODIFICATION; GENOMICS ANALYSIS;

GENETIC ENGINEERING;

AMINO ACID; GENE PRODUCT; GUANOSINE DERIVATIVE; N1 METHYLGUANOSINE; NUCLEIC ACID BASE; PHENYLALANINE TRANSFER RNA; POLYPEPTIDE; TRANSFER RNA; UNCLASSIFIED DRUG; WYEBUTOSINE; WYOSINE;

3' UNTRANSLATED REGION; ARTICLE; CELL VIABILITY; GENE CLUSTER; GENE DELETION; GENETIC COMPLEMENTATION; GENOMICS; KNOCKOUT GENE; MULTIGENE FAMILY; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CHROMATOGRAPHY, THIN LAYER; GENE DELETION; GENE EXPRESSION REGULATION, FUNGAL; GENETIC COMPLEMENTATION TEST; GUANOSINE; HETEROCYCLIC COMPOUNDS, 3-RING; HYDROLYSIS; MOLECULAR STRUCTURE; MULTIGENE FAMILY; PHYLOGENY; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, TRANSFER, AMINO ACYL; SACCHAROMYCES CEREVISIAE;

MAMMALIA; SACCHAROMYCES CEREVISIAE;

EID: 27844508636     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M506939200     Document Type: Article

References (67)

1. Sprinzl, M., Horn, C., Brown, M., Ioudovitch, A., and Steinberg, S. (1998) Nucleic Acids Res. 26, 148-153
2. Grosjean, H., Sprinzl, M., and Steinberg, S. (1995) Biochimie (Paris) 77, 139-141
3. Steinberg, S., Misch, A., and Sprinzl, M. (1993) Nucleic Acids Res. 21, 3011-3015
4. Björk, G. R., Ericson, J. U., Gustafsson, C. E., Hagervall, T. G., Jonsson, Y. H., and Wikstrom, P. M. (1987) Annu. Rev. Biochem. 56, 263-287
5. Persson, B. C. (1993) Mol. Microbiol. 8, 1011-1016
6. Bouadloun, F., Srichaiyo, T., Isaksson, L. A., and Björk, G. R. (1986) J. Bacteriol. 166, 1022-1027
7. Kalhor, H. R., Penjwini, M., and Clarke, S. (2005) Biochem. Biophys. Res. Commun. 334, 433-440
8. Christian, T., Evilia, C., Williams, S., and Hou, Y. M. (2004) J. Mol. Biol. 339, 707-719
9. Björk, G. R., Durand, J. M., Hagervall, T. G., Leipuviene, R., Lundgren, H. K., Nilsson, K., Chen, P., Qian, Q., and Urbonavicius, J. (1999) FEBS Lett. 452, 47-51
10. RajBhandary, U. L., and Chang, S. H. (1968) J. Biol. Chem. 243, 598-608
11. Chang, S. H., and RajBhandary, U. L. (1968) J. Biol. Chem. 243, 592-597
12. RajBhandary, U. L., Stuart, A., and Chang, S. H. (1968) J. Biol. Chem. 243, 584-591
13. RajBhandary, U. L., Faulkner, R. D., and Stuart, A. (1968) J. Biol. Chem. 243, 575-583
14. RajBhandary, U. L., Stuart, A., Hoskinson, R. M., and Khorana, H. G. (1968) J. Biol. Chem. 243, 565-574
15. McCloskey, J. A., Liu, X. H., Grain, P. F., Bruenger, E., Guymon, R., Hashizume, T., and Stetter, K. O. (2000) Nucleic Acids Symp. Ser. 267-268
16. Zhou, S., Sitaramaiah, D., Noon, K. R., Guymon, R., Hashizume, T., and McCloskey, J. A. (2004) Bioorg. Chem. 32, 82-91
17. McCloskey, J. A., Graham, D. E., Zhou, S., Grain, P. F., Ibba, M., Konisky, J., Soll, D., and Olsen, G. J. (2001) Nucleic Acids Res. 29, 4699-4706
18. Noon, K. R., Guymon, R., Grain, P. F., McCloskey, J. A., Thomm, M., Lim, J., and Cavicchioli, R. (2003) J. Bacteriol. 185, 5483-5490
19. Nakanishi, K., Blobstein, S., Funamizu, M., Furutachi, N., Van Lear, G., Grunberger, D., Lanks, K. W., and Weinstein, I. B. (1971) Nat. New Biol. 234, 107-109
20. Blobstein, S. H., Grunberger, D., Weinstein, I. B., and Nakanishi, K. (1973) Biochemistry 12, 188-193
21. Stuart, J. W., Koshlap, K. M., Guenther, R., and Agris, P. F. (2003) J.-Mol. Biol. 334, 901-918
22. Kan, L. S., Ts'o, P. O., von der Haar, F., Sprinzl, M., and Cramer, F. (1975) Biochemistry 14, 3278-3291
23. Maelicke, A., von der Haar, F., and Cramer, F. (1973) Biopolymers 12, 27-43
24. Sussman, J. L., Holbrook, S. R., Warrant, R. W., Church, G. M., and Kim, S. H. (1978) J. Mol. Biol. 123, 607-630
25. Holbrook, S. R., Sussman, J. L, Warrant, R. W., and Kim, S. H. (1978) J. Mol. Biol. 123, 631-660
26. Krzyzosiak, W. J., and Ciesiolka, J. (1983) Nucleic Acids Res. 11, 6913-6921
27. Ghosh, K., and Ghosh, H. P. (1972) J. Biol. Chem. 247, 3369-3375
28. Carlson, B. A., Kwon, S. Y., Chamorro, M., Oroszlan, S., Hatfield, D. L., and Lee, B. J. (1999) Virology 255, 2-8
29. Carlson, B. A., Mushinski, J. F., Henderson, D. W., Kwon, S. Y., Crain, P. F., Lee, B. J., and Hatfield, D. L. (2001) Virology 279, 130-135
30. Mazabraud, A. (1979) FEBS Lett. 100, 235-240
31. Smith, D. W., McNamara, A. L., Mushinski, J. F., and Hatfield, D. L. (1985) J. Biol. Chem. 260, 147-151
32. Shugart, L. (1972) Exp. Gerontol. 7, 251-262
33. Li, H. J., Nakanishi, K., Grunberger, D., and Weinstein, I. B. (1973) Biochem. Biophys. Res. Commun. 55, 818-823
34. Droogmans, L., and Grosjean, H. (1987) EMBO J. 6, 477-483
35. Smith, C., Schmidt, P. G., Petsch, J., and Agris, P. F. (1985) Biochemistry 24, 1434-1440
36. Munch, H. J., and Thiebe, R. (1975) FEBS Lett. 51, 257-258
37. Pergolizzi, R. G., Engelhardt, D. L., and Grunberger, D. (1979) Nucleic Acids Res. 6, 2209-2216
38. Reader, J. S., Metzgar, D., Schimmel, P., and de Crécy-Lagard, V. (2004) J. Biol. Chem. 279, 6280-6285
39. Van Lanen, S. G., Reader, J. S., Swairjo, M. A., de Crécy-Lagard, V., Lee, B., and Iwata-Reuyl, D. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 4264-4269
40. Bishop, A. C., Xu, J., Johnson, R. C., Schimmel, P., and de Crécy-Lagard, V. (2002) J. Biol. Chem. 277, 25090-25095
41. Gerlt, J. A. (2003) Chem. Biol. 10, 1141-1142
42. Osterman, A., and Overbeek, R. (2003) Curr. Opin. Chem. Biol. 7, 238-251
43. Date, S. V., and Marcotte, E. M. (2005) Bioinformatics 21, 2558-2559
44. Datta, D., Wang, P., Carrico, I. S., Mayo, S. L., and Tirrell, D. A. (2002) J. Am. Chem. Soc. 124, 5652-5653
45. Schmidt, J., Wang, R., Stanfield, S., and Reid, B. R. (1971) Biochemistry 10, 3264-3268
46. Shepard, A., Shiba, K., and Schimmel, P. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 9964-9968
47. Keith, G., and Dirheimer, G. (1980) Biochem. Biophys. Res. Commun. 92, 109-115
48. Keith, G., Picaud, F., Weissenbach, J., Ebel, J. P., Petrissant, G., and Dirheimer, G. (1973) FEBS Lett. 31, 345-347
49. Guerrier-Takada, C, Dirheimer, G., Grosjean, H., and Keith, G. (1975) FEBS Lett. 60, 286-289
50. Keith, G., Ebel, J. P., and Dirheimer, G. (1974) FEBS Lett. 48, 50-52
51. Martin, R., Sibler, A. P., Schneller, J. M., Keith, G., Stahl, A. J., and Dirheimer, G. (1978) C. R. Acad. Sci. Hebd. Seances Acad. Sci. D 287, 845-848
52. Sprinzl, M., Steegborn, C., Hubel, F., and Steinberg, S. (1996) Nucleic Acids Res. 24, 68-72
53. Altwegg, M., and Kubli, E. (1979) Nucleic Acids Res. 7, 93-105
54. Matte-Tailliez, O., Zivanovic, Y., and Forterre, P. (2000) Trends Genet. 16, 533-536
55. Armengaud, J., Urbonavicius, J., Fernandez, B., Chaussinand, G., Bujnicki, J. M., and Grosjean, H. (2004) J. Biol. Chem. 279, 37142-37152
56. Golankiewicz, B., Zielonacka-Lis, E., and Folkman, W. (1985) Nucleic Acids Res. 13, 2443-2449
57. Zhou, S., Sitaramaiah, D., Pomerantz, S. C., Crain, P. F., and McCloskey, J. A. (2004) Nucleosides Nucleotides Nucleic Acids 23, 41-50
58. Xue, H., Shen, W., and Wong, J. T. (1993) J. Chromatogr. 613, 247-255
59. Grunberger, D., Weinstein, I. B., and Mushinski, J. F. (1975) Nature 253, 66-67
60. Wimmer, E., Maxwell, I. H., and Tener, G. M. (1968) Biochemistry 7, 2623-2628
61. Taniguchi, H., and Hayashi, N. (1998) Nucleic Acids Res. 26, 1481-1486
62. Edmonds, C. G., Vestal, M. L., and McCloskey, J. A. (1985) Nucleic Acids Res. 13, 8197-8206
63. Pang, H., Smith, D. L., Crain, P. F., Yamaizumi, K., Nishimura, S., and McCloskey, J. A. (1982) Eur. J. Biochem. 127, 459-471
64. Vacher, J., Grosjean, H., Houssier, C, and Buckingham, R. H. (1984) J. Mol. Biol. 177, 329-342
65. Kuchino, Y., Borek, E., Grunberger, D., Mushinski, J. F., and Nishimura, S. (1982) Nucleic Acids Res. 10, 6421-6432
66. Kuchino, Y., Kasai, H., Yamaizumi, Z., Nishimura, S., and Borek, E. (1979) Biochim. Biophys. Acta 565, 215-218
67. Bjork, G. R., Jacobsson, K., Nilsson, K., Johansson, M. J., Bystrom, A. S., and Persson, O. P. (2001) EMBO J. 20, 231-239