Genetic characterization and phylogenetic analysis of porcine circovirus type 2 strains present in Cuban swine herds

Research in Veterinary Science

Volumn 89, Issue 2, 2010, Pages 301-305

  Pérez, Lester J ^a   De Arce, Heidy Díaz ^a   Frías, María T ^a  

^a CENTRO NACIONAL DE SANIDAD AGROPECUARIA CENSA   (Cuba)

Author keywords

Genetic characterization; Genotype; Phylogeny; Porcine circovirus 2

Indexed keywords

AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; CANADA; CIRCOVIRIDAE INFECTION; CIRCOVIRUS; CONTROLLED STUDY; CUBA; GENE CLUSTER; GENETIC VARIABILITY; GEOGRAPHIC ORIGIN; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PORCINE CIRCOVIRUS TYPE 2; SEQUENCE HOMOLOGY; SWINE; VIRUS CHARACTERIZATION; VIRUS GENOME; VIRUS STRAIN; VIRUS TYPING;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CIRCOVIRUS; CUBA; DNA, VIRAL; GENETIC VARIATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; SWINE; SWINE DISEASES; VIRAL PROTEINS;

MIRIDAE; PORCINE CIRCOVIRUS; PORCINE CIRCOVIRUS 2; SUIDAE;

EID: 77955918177     PISSN: 00345288     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.rvsc.2010.03.013     Document Type: Article

References (38)

1. Allan G.M., Ellis J.A. Porcine circoviruses: a review. J. Vet. Diagn. Invest. 2000, 12:3-14.
2. Allan G.M., McNeilly F., Cassidy J.P., Reilly G.A., Adair B., Ellis W.A., McNulty M.S. Pathogenesis of porcine circovirus; experimental infections of colostrum deprived piglets and examination of pig foetal material. Vet. Microbiol. 1995, 44:49-64.
3. Almeida M.R., Silva A., Castro L.A., Almeida S.R., Monnerat F.S., Oliveira F.S., Moraes M.P. Porcine circoviruses. Virus Rev. Res. 2004, 09:32-42.
4. An D., Song D., Park B. Systemic cytokine profiles of mice vaccinated with naked DNAs encoding six open reading frame antigens of porcine circovirus type 2 (PCV2). Res. Vet. Sci. 2008, 85:503-509.
5. Carman S., Cai H., DeLay J., Youssef S., McEwen B., Gagnon C., Tremblay D., Hazlett M., Lusis P., Fairles J., Alexander H., van Dreumel T. The emergence of a new strain of porcine circovirus-2 in Ontario and Quebec swine and its association with severe porcine circovirus associated disease - 2004-2006. Can. J. Vet. Res. 2008, 72:259-268.
6. Cheung A.K., Lager K.M., Kohutyuk O.I., Vincent A.L., Henry S.C., Baker R.B., Rowland R.R., Dunham A.G. Detection of two porcine circovirus type 2 genotypic groups in United States swine herds. Arch. Virol. 2007, 152:1035-1044.
7. Darwich L., Segalés J., Mateu E. Pathogenesis of postweaning multisystemic wasting syndrome caused by porcine circovirus 2: an immune riddle. A review. Arch. Virol. 2004, 149:857-874.
8. Dupont, K., Nielsen, E.O., Bækbo, P., Larsen, L.E., 2007. Genomic analysis of PCV2 isolates from Danish archives and a current PMWS case-control study supports a shift in genotypes with time. Vet. Microbiol. doi: doi:10.1016/j.vetmic.2007.09.016.
9. Gagnon C.A., Tremblay D., Tijssen P., Venne M.-H., Houde A., Elahi S.M. The emergence of porcine circovirus 2b genotype (PCV-2b) in swine in Canada. Can. Vet. J. 2007, 48:811-819.
10. Grau-Roma L., Crisci E., Sibila M., López-Soria S., Nofrarias M., Cortey M., Fraile L., Olvera A., Segales J. A proposal on porcine circovirus type 2 (PCV2) genotype definition and their relation with postweaning multisystemic wasting syndrome (PMWS) occurrence. Vet. Microbiol. 2008, 128:23-35.
11. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 1999, 41:95-98.
12. Hamel A.L., Lin L.L., Nayar G.P. Nucleotide sequence of porcine circovirus associated with postweaning multisystemic wasting syndrome in pigs. J. Virol. 1998, 72:5262-5267.
13. Harding J., Clark E. Recognizing and diagnosing postweaning multisystemic wasting syndrome (PMWS). Swine Health Prod. 1998, 5:201-203.
14. Krakowka S., Ellis J.A., McNeilly F., Ringler S., Ring D.M., Allan G. Activation of the immune system is the pivotal event in the production of wasting disease in pigs infected with porcine circovirus-2 (PCV-2). Vet. Pathol. 2001, 38:31-42.
15. Krakowka S., Ellis J.A., McNeilly F., Gilpin D., Meehan B., McCullough K., Allan G. Immunologic features of porcine circovirus type 2 infection. Viral Immunol. 2002, 15:567-582.
16. Larochelle R., Magar R., D'Allaire S. Genetic characterization and phylogenetic analysis of porcine circovirus type 2 (PCV2) strains from cases presenting various clinical conditions. Virus Res. 2002, 90:101-112.
17. Liu J., Chen I., Kwang J. Characterization of a previously unidentified viral protein in porcine circovirus type 2-infected cells and its role in virus induced apoptosis. J. Virol. 2005, 79:8262-8274.
18. Lohse L., Botner A., Hansen A.S.L., Frederiksen T., Dupont K., Christensen C., Bækbo P., Nielsen J. Examination for a viral co-factor in postweaning multisystemic wasting syndrome (PMWS). Vet. Microbiol. 2008, 129:97-107.
19. Mankertz A., Hillenbrand B. Replication of porcine circovirus type 1 requires two proteins encoded by the viral rep gene. Virology 2001, 279:429-438.
20. Mankertz A., Mueller B., Steinfeldt T., Schmitt C., Finsterbusch T. New reporter gene-based replication assay reveals exchangeability of replication factors of porcine circovirus types 1 and 2. J. Virol. 2003, 77:9885-9893.
21. Meerts P., Van Gucht S., Cox E., Vandebosch A., Nauwynck H.J. Correlation between type of adaptive immune response against porcine circovirus type 2 and level of virus replication. Viral Immunol. 2005, 18:333-341.
22. Muhling J., Raye W.S., Buddle J.R., Wilcox G.E. Genetic characterisation of Australian strains of porcine circovirus types 1 and 2. Aust. Vet. J. 2006, 84:421-425.
23. Nawagitgul P., Morozov I., Bolin S.R., Harms P.A., Sorden S.D., Paul P.S. Open reading frame 2 of porcine circovirus type 2 encodes a major capsid protein. J. Gen. Virol. 2000, 81:2281-2287.
24. Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W., Latimer K.S., Lukert P.D. Beak and feather disease virus and porcine circovirus genomes: intermediates between the geminiviruses and plant circoviruses. Arch. Virol. 1998, 143(9):1723-1744.
25. O'Connor B., Gauvreau H., West K., Bogdan J., Ayroud M., Clark E., Konoby C., Allan G., Ellis J.A. Multiple porcine circovirus 2 associated abortion and reproductive failure in a multiple-site swine production unit. Can. Vet. J. 2001, 42:551-553.
26. Ohlinger, V.F., Schmidt, U., Pesch, S., 2000. Studies on pathogenic aspects of the postweaning multisystemic wasting syndrome (PMWS). In: Proceedings of the 16th International Pig Veterinary Society Congress.
27. Olvera A., Cortey M., Segales J. Molecular evolution of porcine circovirus type 2 genomes: phylogeny and clonality. Virology 2007, 357:175-185.
28. Opriessnig T., McKeown N.E., Zhou E.M., Meng X.J., Halbur P.G. Genetic and experimental comparison of porcine circovirus type 2 (PCV2) isolates from cases with and without PCV2-associated lesions provides evidence for differences in virulence. J. Gen. Virol. 2006, 87:2923-2932.
29. Pérez, L.J., Díaz de Arce, H., Percedo, M.I., Domínguez, P., Frías, M.T., 2009. First report of porcine circovirus type 2 infections in Cuba. Res. Vet. Sci. doi: doi:10.1016/j.rvsc.2009.11.014.
30. Rosell C., Segalés J., Ramos-Vara J.A., Folch J.M., Rodriguez-Arrioja G.M., Duran C.O., Balasch M., Plana-Duran J., Domingo M. Identification of porcine circovirus in tissues of pigs with porcine dermatitis and nephropathysyndrome. Vet. Rec. 2000, 146:40-43.
31. Segalés J., Allan G.M., Domingo M. Porcine circovirus diseases. Anim. Health Res. Rev. 2005, 6:119-142.
32. Smith W.J., Thompson J.R., Done S. Dermatitis/nephropathy syndrome of pigs. Vet. Rec. 1993, 132:47.
33. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
34. Timmusk, S., Wallgren, P., Bélak, K., Berg, M., Fossum, C., 2005. Genetic analysis of PCV2 capsid protein sequences reveals two main groups of Swedish isolates. In: International Conference on Animal Circoviruses and Associated Diseases, Belfast, N. Ireland, UK, p. 82.
35. Tischer I., Mields W., Wolff D., Vagt M., Griem W. Studies on epidemiology and pathogenicity of porcine circovirus. Arch. Virol. 1986, 91:271-276.
36. Todd D., McNulty M.S., Mankertz A., Lukert P.D., Randles J.W., Dale J.L. Circoviridae. Virus Taxonomy. Seventh Report of the ICTV 2000, Academic Press, San Diego. M.H.V. van Regenmortel, C.M. Fauquet, D.H.L. Bishop, E.B. Carstens, M.K. Estes, S.M. Lemon, J. Malinoff, M.A. Mayo, D.J. McGeoch, C.R. Pringle, R.B. Wickner (Eds.).
37. Tomás A., Fernandes L.T., Valero O., Segalés J. A meta-analysis on experimental infections with porcine circovirus type 2 (PCV2). Vet. Microbiol. 2008, 132:260-273.
38. West K.W., Bystrom J., Wojnarowicz C. Myocarditis and abortion associated with intrauterine infection of sows with porcine circovirus-2. J. Vet. Diagn. Invest. 1999, 11(6):530-532.