-
1
-
-
0037136435
-
Genomic analysis of membrane protein families: Abundance and conserved motifs
-
Liu Y, Engelman DM, Gerstein M. Genomic analysis of membrane protein families: abundance and conserved motifs. Genome Biol 2002;3:54.
-
(2002)
Genome Biol.
, vol.3
, pp. 54
-
-
Liu, Y.1
Engelman, D.M.2
Gerstein, M.3
-
2
-
-
33745698481
-
A limited universe of membrane protein families and folds
-
Oberai A, Ihm Y, Kim S, Bowie JU. A limited universe of membrane protein families and folds. Protein Sci 2006;15:1723-1734.
-
(2006)
Protein Sci.
, vol.15
, pp. 1723-1734
-
-
Oberai, A.1
Ihm, Y.2
Kim, S.3
Bowie, J.U.4
-
3
-
-
0842286957
-
Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern
-
Inoue Y, Ikeda M, Shimizu T. Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern. Comput Biol Chem 2004;28:39-49.
-
(2004)
Comput Biol. Chem.
, vol.28
, pp. 39-49
-
-
Inoue, Y.1
Ikeda, M.2
Shimizu, T.3
-
4
-
-
0037252680
-
GPCRDB information system for G protein-coupled receptors
-
Horn F, Bettler E, Oliveira L, Campagne F, Cohen FE, Vriend G. GPCRDB information system for G protein-coupled receptors. Nucleic Acids Res 2003;31:294-297.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 294-297
-
-
Horn, F.1
Bettler, E.2
Oliveira, L.3
Campagne, F.4
Cohen, F.E.5
Vriend, G.6
-
5
-
-
33644873454
-
TCDB: The Transporter Classification Database for membrane transport protein analyses and information
-
Saier MH, Jr, Tran CV, Barabote RD. TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Nucleic Acids Res 2006;34:D181-D186.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Saier Jr., M.H.1
Tran, C.V.2
Barabote, R.D.3
-
6
-
-
33748449674
-
Defining the fold space of membrane proteins: The CAMPS database
-
Martin-Galiano AJ, Frishman D. Defining the fold space of membrane proteins: the CAMPS database. Proteins 2006;64:906-922.
-
(2006)
Proteins
, vol.64
, pp. 906-922
-
-
Martin-Galiano, A.J.1
Frishman, D.2
-
7
-
-
38549153238
-
Data growth and its impact on the SCOP database: New developments
-
Andreeva A, Howorth D, Chandonia JM, Brenner SE, Hubbard TJ, Chothia C, Murzin AG. Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res 2008;36:D419-D425.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Andreeva, A.1
Howorth, D.2
Chandonia, J.M.3
Brenner, S.E.4
Hubbard, T.J.5
Chothia, C.6
Murzin, A.G.7
-
8
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995;247:536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
9
-
-
58149187899
-
The CATH classification revisited: Architectures reviewed and new ways to characterize structural divergence in superfamilies
-
Cuff AL, Sillitoe I, Lewis T, Redfern OC, Garratt R, Thornton J, Orengo CA. The CATH classification revisited: architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Res 2009;37:D310-D314.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Cuff, A.L.1
Sillitoe, I.2
Lewis, T.3
Redfern, O.C.4
Garratt, R.5
Thornton, J.6
Orengo, C.A.7
-
10
-
-
0030777303
-
CATH: A hierarchic classification of protein domain structures
-
Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM. CATH: a hierarchic classification of protein domain structures. Structure 1997;5:1093-1108.
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
Thornton, J.M.6
-
11
-
-
13444280419
-
PDB-TM: Selection and membrane localization of transmembrane proteins in the protein data bank
-
Tusnady GE, Dosztanyi Z, Simon I. PDB-TM: selection and membrane localization of transmembrane proteins in the protein data bank. Nucleic Acids Res 2005;33:D275-D278.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Tusnady, G.E.1
Dosztanyi, Z.2
Simon, I.3
-
12
-
-
0031954925
-
Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms
-
Wallin E, von Heijne G. Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms. Protein Sci 1998;7:1029-1038.
-
(1998)
Protein Sci.
, vol.7
, pp. 1029-1038
-
-
Wallin, E.1
Von G. Heijne2
-
13
-
-
0041428149
-
The versatile beta-barrel membrane protein
-
Wimley WC. The versatile beta-barrel membrane protein. Curr Opin Struct Biol 2003;13:404-411.
-
(2003)
Curr. Opin. Struct Biol.
, vol.13
, pp. 404-411
-
-
Wimley, W.C.1
-
14
-
-
34249683488
-
Membrane protein structure: Prediction versus reality
-
Elofsson A, von Heijne G. Membrane protein structure: prediction versus reality. Annu Rev Biochem 2007;76:125-140.
-
(2007)
Annu Rev. Biochem.
, vol.76
, pp. 125-140
-
-
Elofsson, A.1
Von G. Heijne2
-
15
-
-
70349786938
-
Dissecting membrane protein architecture: An annotation of structural complexity
-
Arce J, Sturgis JN, Duneau JP. Dissecting membrane protein architecture: an annotation of structural complexity. Biopolymers 2009;91:815-829.
-
(2009)
Biopolymers
, vol.91
, pp. 815-829
-
-
Arce, J.1
Sturgis, J.N.2
Duneau, J.P.3
-
16
-
-
66149109193
-
The effect of loops on the structural organization of alpha-helical membrane proteins
-
Tastan O, Klein-Seetharaman J, Meirovitch H. The effect of loops on the structural organization of alpha-helical membrane proteins. Biophys J 2009;96:2299-2312.
-
(2009)
Biophys. J.
, vol.96
, pp. 2299-2312
-
-
Tastan, O.1
Klein-Seetharaman, J.2
Meirovitch, H.3
-
17
-
-
0025249842
-
Membrane protein folding and oligomerization: The two-stage model
-
Popot JL, Engelman DM. Membrane protein folding and oligomerization: the two-stage model. Biochemistry 1990;29:4031-4037.
-
(1990)
Biochemistry
, vol.29
, pp. 4031-4037
-
-
Popot, J.L.1
Engelman, D.M.2
-
18
-
-
1542723470
-
Transmembrane protein domains rarely use covalent domain recombination as an evolutionary mechanism
-
Liu Y, Gerstein M, Engelman DM. Transmembrane protein domains rarely use covalent domain recombination as an evolutionary mechanism. Proc Natl Acad Sci USA 2004;101:3495-3497.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 3495-3497
-
-
Liu, Y.1
Gerstein, M.2
Engelman, D.M.3
-
19
-
-
77951217658
-
Current status of membrane protein structure classification
-
Neumann S, Fuchs A, Mulkidjanian A, Frishman D. Current status of membrane protein structure classification. Proteins 2010;78:1760-1773.
-
(2010)
Proteins
, vol.78
, pp. 1760-1773
-
-
Neumann, S.1
Fuchs, A.2
Mulkidjanian, A.3
Frishman, D.4
-
20
-
-
61449245515
-
Prediction of helix-helix contacts and interacting helices in polytopic membrane proteins using neural networks
-
Fuchs A, Kirschner A, Frishman D. Prediction of helix-helix contacts and interacting helices in polytopic membrane proteins using neural networks. Proteins 2009;74:857-871.
-
(2009)
Proteins
, vol.74
, pp. 857-871
-
-
Fuchs, A.1
Kirschner, A.2
Frishman, D.3
-
21
-
-
36949003878
-
Co-evolving residues in membrane proteins
-
Fuchs A, Martin-Galiano AJ, Kalman M, Fleishman S, Ben-Tal N, Frishman D. Co-evolving residues in membrane proteins. Bioinformatics 2007;23:3312-3319.
-
(2007)
Bioinformatics
, vol.23
, pp. 3312-3319
-
-
Fuchs, A.1
Martin-Galiano, A.J.2
Kalman, M.3
Fleishman, S.4
Ben-Tal, N.5
Frishman, D.6
-
24
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov IN, Bourne PE. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng 1998;11:739-747.
-
(1998)
Protein Eng
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
25
-
-
61849113253
-
Graph clustering via a discrete uncoupling process
-
Dongen Sv. Graph clustering via a discrete uncoupling process. SIAM J Matrix Anal Appl 2008;30:121-141.
-
(2008)
SIAM J. Matrix Anal. Appl.
, vol.30
, pp. 121-141
-
-
Sv, D.1
-
26
-
-
0031865006
-
Touring protein fold space with Dali/FSSP
-
Holm L, Sander C. Touring protein fold space with Dali/FSSP. Nucleic Acids Res 1998;26:316-319.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 316-319
-
-
Holm, L.1
Sander, C.2
-
27
-
-
0034651866
-
An alternative view of protein fold space
-
Shindyalov IN, Bourne PE. An alternative view of protein fold space. Proteins 2000;38:247-260.
-
(2000)
Proteins
, vol.38
, pp. 247-260
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
28
-
-
58149203324
-
Discovery of new GPCR biology: One receptor structure at a time
-
Hanson MA, Stevens RC. Discovery of new GPCR biology: one receptor structure at a time. Structure 2009;17:8-14.
-
(2009)
Structure
, vol.17
, pp. 8-14
-
-
Hanson, M.A.1
Stevens, R.C.2
-
29
-
-
33645793799
-
Structure modeling of all identified G protein-coupled receptors in the human genome
-
Zhang Y, Devries ME, Skolnick J. Structure modeling of all identified G protein-coupled receptors in the human genome. PLo S Comput Biol 2006;2:e13.
-
(2006)
PLo S Comput Biol.
, vol.2
-
-
Zhang, Y.1
Devries, M.E.2
Skolnick, J.3
-
31
-
-
0041353145
-
Structure and mechanism of the lactose permease of Escherichia coli
-
Abramson J, Smirnova I, Kasho V, Verner G, Kaback HR, Iwata S. Structure and mechanism of the lactose permease of Escherichia coli. Science 2003;301:610-615.
-
(2003)
Science
, vol.301
, pp. 610-615
-
-
Abramson, J.1
Smirnova, I.2
Kasho, V.3
Verner, G.4
Kaback, H.R.5
Iwata, S.6
-
32
-
-
0037418859
-
Gating the selectivity filter in ClC chloride channels
-
Dutzler R, Campbell EB, MacKinnon R. Gating the selectivity filter in ClC chloride channels. Science 2003;300:108-112.
-
(2003)
Science
, vol.300
, pp. 108-112
-
-
Dutzler, R.1
Campbell, E.B.2
MacKinnon, R.3
-
33
-
-
33646445156
-
Structure of the multidrug transporter EmrD from Escherichia coli
-
Yin Y, He X, Szewczyk P, Nguyen T, Chang G. Structure of the multidrug transporter EmrD from Escherichia coli. Science 2006;312:741-744.
-
(2006)
Science
, vol.312
, pp. 741-744
-
-
Yin, Y.1
He, X.2
Szewczyk, P.3
Nguyen, T.4
Chang, G.5
|