-
1
-
-
0142217498
-
PH-dependent translocation of alpha-tocopherol transfer protein (alpha-TTP) between hepatic cytosol and late endosomes
-
Horiguchi M, Arita M, Kaempf-Rotzoll DE, Tsujimoto M, Inoue K, Arai H. pH-dependent translocation of alpha-tocopherol transfer protein (alpha-TTP) between hepatic cytosol and late endosomes. Genes Cells 2003;8:789-800.
-
(2003)
Genes Cells
, vol.8
, pp. 789-800
-
-
Horiguchi, M.1
Arita, M.2
Kaempf-Rotzoll, D.E.3
Tsujimoto, M.4
Inoue, K.5
Arai, H.6
-
2
-
-
55749092149
-
Structural model and functional significance of pH-dependent talin-actin binding for focal adhesion remodeling
-
Srivastava J, Barreiro G, Groscurth S, Gingras AR, Goult BT, Critchley DR, Kelly MJ, Jacobson MP, Barber DL. Structural model and functional significance of pH-dependent talin-actin binding for focal adhesion remodeling. Proc Natl Acad Sci USA 2008;105:14436-14441.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 14436-14441
-
-
Srivastava, J.1
Barreiro, G.2
Groscurth, S.3
Gingras, A.R.4
Goult, B.T.5
Critchley, D.R.6
Kelly, M.J.7
Jacobson, M.P.8
Barber, D.L.9
-
3
-
-
53249124822
-
Probing the pH-dependent prepore to pore transition of Bacillus anthracis protective antigen with differential oxidative protein footprinting
-
Smedley JG, III, Sharp JS, Kuhn JF, Tomer KB. Probing the pH-dependent prepore to pore transition of Bacillus anthracis protective antigen with differential oxidative protein footprinting. Biochemistry 2008;47:10694-10704.
-
(2008)
Biochemistry
, vol.47
, pp. 10694-10704
-
-
Smedley III, J.G.1
Sharp, J.S.2
Kuhn, J.F.3
Tomer, K.B.4
-
4
-
-
7544223280
-
Direct observation of the pH-dependent equilibrium between L-like and M intermediates of photoactive yellow protein
-
Imamoto Y, Harigai M, Kataoka M. Direct observation of the pH-dependent equilibrium between L-like and M intermediates of photoactive yellow protein. FEBS Lett 2004;577:75-80.
-
(2004)
FEBS Lett.
, vol.577
, pp. 75-80
-
-
Imamoto, Y.1
Harigai, M.2
Kataoka, M.3
-
5
-
-
29444454319
-
Characterizing a partially folded intermediate of the villin headpiece domain under non-denaturing conditions: Contribution of His41 to the pH-dependent stability of the N-terminal subdomain
-
Grey MJ, Tang Y, Alexov E, McKnight CJ, Raleigh DP, Palmer AG, III. Characterizing a partially folded intermediate of the villin headpiece domain under non-denaturing conditions: contribution of His41 to the pH-dependent stability of the N-terminal subdomain. J Mol Biol 2006;355:1078-1094.
-
(2006)
J. Mol. Biol.
, vol.355
, pp. 1078-1094
-
-
Grey, M.J.1
Tang, Y.2
Alexov, E.3
McKnight, C.J.4
Raleigh, D.P.5
Palmer III, A.G.6
-
6
-
-
0038131734
-
Surface salt bridges, double-mutant cycles, and protein stability: An experimental and computational analysis of the interaction of the Asp 23 side chain with the N-terminus of the N-terminal domain of the ribosomal protein l9
-
Luisi DL, Snow CD, Lin JJ, Hendsch ZS, Tidor B, Raleigh DP. Surface salt bridges, double-mutant cycles, and protein stability: an experimental and computational analysis of the interaction of the Asp 23 side chain with the N-terminus of the N-terminal domain of the ribosomal protein l9. Biochemistry 2003;42:7050-7060.
-
(2003)
Biochemistry
, vol.42
, pp. 7050-7060
-
-
Luisi, D.L.1
Snow, C.D.2
Lin, J.J.3
Hendsch, Z.S.4
Tidor, B.5
Raleigh, D.P.6
-
7
-
-
34249945198
-
Dissociation and unfolding of bovine odorant binding protein at acidic pH
-
Mazzini A, Polverini E, Parisi M, Sorbi RT, Favilla R. Dissociation and unfolding of bovine odorant binding protein at acidic pH. J Struct Biol 2007;159:82-91.
-
(2007)
J. Struct Biol.
, vol.159
, pp. 82-91
-
-
Mazzini, A.1
Polverini, E.2
Parisi, M.3
Sorbi, R.T.4
Favilla, R.5
-
8
-
-
2542478059
-
Thermodynamic stability of the C-terminal domain of the human inducible heat shock protein 70
-
Fuertes MA, Perez JM, Soto M, Menendez M, Alonso C. Thermodynamic stability of the C-terminal domain of the human inducible heat shock protein 70. Biochim Biophys Acta 2004;1699:45-56.
-
(2004)
Biochim Biophys. Acta
, vol.1699
, pp. 45-56
-
-
Fuertes, M.A.1
Perez, J.M.2
Soto, M.3
Menendez, M.4
Alonso, C.5
-
9
-
-
33751209829
-
PH-Dependent conformational stability of the ribotoxin alpha-sarcin and four active site charge substitution variants
-
Garcia-Mayoral MF, del Pozo AM, Campos-Olivas R, Gavilanes JG, Santoro J, Rico M, Laurents DV, Bruix M. pH-Dependent conformational stability of the ribotoxin alpha-sarcin and four active site charge substitution variants. Biochemistry 2006;45:13705-13718.
-
(2006)
Biochemistry
, vol.45
, pp. 13705-13718
-
-
Garcia-Mayoral, M.F.1
Pozo, A.M.D.2
Campos-Olivas, R.3
Gavilanes, J.G.4
Santoro, J.5
Rico, M.6
Laurents, D.V.7
Bruix, M.8
-
10
-
-
33846011386
-
PK (a) values for sidechain carboxyl groups of a PGB1 variant explain salt and pH-dependent stability
-
Lindman S, Linse S, Mulder FA, Andre I. pK (a) values for sidechain carboxyl groups of a PGB1 variant explain salt and pH-dependent stability. Biophys J 2007;92:257-266.
-
(2007)
Biophys. J.
, vol.92
, pp. 257-266
-
-
Lindman, S.1
Linse, S.2
Mulder, F.A.3
Andre, I.4
-
11
-
-
9644303208
-
Analysis of the pH-dependent folding and stability of histidine point mutants allows characterization of the denatured state and transition state for protein folding
-
Horng JC, Cho JH, Raleigh DP. Analysis of the pH-dependent folding and stability of histidine point mutants allows characterization of the denatured state and transition state for protein folding. J Mol Biol 2005;345:163-173.
-
(2005)
J. Mol. Biol.
, vol.345
, pp. 163-173
-
-
Horng, J.C.1
Cho, J.H.2
Raleigh, D.P.3
-
12
-
-
0037661368
-
PH-dependent stability of the human alpha-lactalbumin molten globule state: Contrasting roles of the 6-120 disulfide and the beta-subdomain at low and neutral pH
-
Horng JC, Demarest SJ, Raleigh DP. pH-dependent stability of the human alpha-lactalbumin molten globule state: contrasting roles of the 6-120 disulfide and the beta-subdomain at low and neutral pH. Proteins 2003;52:193-202.
-
(2003)
Proteins
, vol.52
, pp. 193-202
-
-
Horng, J.C.1
Demarest, S.J.2
Raleigh, D.P.3
-
13
-
-
0036302125
-
PH-dependent stability and folding kinetics of a protein with an unusual alpha-beta topology: The C-terminal domain of the ribosomal protein L9
-
Sato S, Raleigh DP. pH-dependent stability and folding kinetics of a protein with an unusual alpha-beta topology: the C-terminal domain of the ribosomal protein L9. J Mol Biol 2002;318:571-582.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 571-582
-
-
Sato, S.1
Raleigh, D.P.2
-
14
-
-
0034674156
-
PH-dependent interactions and the stability and folding kinetics of the N-terminal domain of L9. Electrostatic interactions are only weakly formed in the transition state for folding
-
Luisi DL, Raleigh DP. pH-dependent interactions and the stability and folding kinetics of the N-terminal domain of L9. Electrostatic interactions are only weakly formed in the transition state for folding. J Mol Biol 2000;299:1091-1100.
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 1091-1100
-
-
Luisi, D.L.1
Raleigh, D.P.2
-
15
-
-
0037623315
-
The pH-dependent stability of wild-type and mutant transthyretin oligomers
-
Skoulakis S, Goodfellow JM. The pH-dependent stability of wild-type and mutant transthyretin oligomers. Biophys J 2003;84:2795-2804.
-
(2003)
Biophys. J.
, vol.84
, pp. 2795-2804
-
-
Skoulakis, S.1
Goodfellow, J.M.2
-
16
-
-
68949105477
-
Conformational implications of an inversed pH-dependent antibody aggregation
-
Perico N, Purtell J, Dillon TM, Ricci MS. Conformational implications of an inversed pH-dependent antibody aggregation. J Pharm Sci 2009;98:3031-3042.
-
(2009)
J. Pharm. Sci.
, vol.98
, pp. 3031-3042
-
-
Perico, N.1
Purtell, J.2
Dillon, T.M.3
Ricci, M.S.4
-
17
-
-
33845596138
-
PH-dependent aggregation of cutinase is efficiently suppressed by 1, 8-ANS
-
Pedersen S, Nesgaard L, Baptista RP, Melo EP, Kristensen SR, Otzen DE. pH-dependent aggregation of cutinase is efficiently suppressed by 1, 8-ANS. Biopolymers 2006;83:619-629.
-
(2006)
Biopolymers
, vol.83
, pp. 619-629
-
-
Pedersen, S.1
Nesgaard, L.2
Baptista, R.P.3
Melo, E.P.4
Kristensen, S.R.5
Otzen, D.E.6
-
18
-
-
0344255649
-
Solid state NMR reveals a pH-dependent antiparallel beta-sheet registry in fibrils formed by a beta-amyloid peptide
-
Petkova AT, Buntkowsky G, Dyda F, Leapman RD, Yau WM, Tycko R. Solid state NMR reveals a pH-dependent antiparallel beta-sheet registry in fibrils formed by a beta-amyloid peptide. J Mol Biol 2004;335:247-260.
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 247-260
-
-
Petkova, A.T.1
Buntkowsky, G.2
Dyda, F.3
Leapman, R.D.4
Yau, W.M.5
Tycko, R.6
-
19
-
-
0142247606
-
PH-dependent amyloid and protofibril formation by the ABri peptide of familial British dementia
-
Srinivasan R, Jones EM, Liu K, Ghiso J, Marchant RE, Zagorski MG. pH-dependent amyloid and protofibril formation by the ABri peptide of familial British dementia. J Mol Biol 2003;333:1003-1023.
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 1003-1023
-
-
Srinivasan, R.1
Jones, E.M.2
Liu, K.3
Ghiso, J.4
Marchant, R.E.5
Zagorski, M.G.6
-
20
-
-
0027177102
-
Interaction of barnase with its popypeptide inhibitor barstar studied by protein engineering
-
Schreiber G, Fersht AR. Interaction of barnase with its popypeptide inhibitor barstar studied by protein engineering. Biochemistry 1993;32:5145-5150.
-
(1993)
Biochemistry
, vol.32
, pp. 5145-5150
-
-
Schreiber, G.1
Fersht, A.R.2
-
21
-
-
34548818139
-
PH-dependent binding of the Epsin ENTH domain and the AP180 ANTH domain to PI (4, 5) P2-containing bilayers
-
Hom RA, Vora M, Regner M, Subach OM, Cho W, Verkhusha VV, Stahelin RV, Kutateladze TG. pH-dependent binding of the Epsin ENTH domain and the AP180 ANTH domain to PI (4, 5) P2-containing bilayers. J Mol Biol 2007;373:412-423.
-
(2007)
J. Mol. Biol.
, vol.373
, pp. 412-423
-
-
Hom, R.A.1
Vora, M.2
Regner, M.3
Subach, O.M.4
Cho, W.5
Verkhusha, V.V.6
Stahelin, R.V.7
Kutateladze, T.G.8
-
22
-
-
0029056922
-
Energetics of protein-protein interactions: Analysis of the barnase-barstar interface by single mutations and double mutant cycles
-
Schreiber G, Fersht AR. Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles. J Mol Biol 1995;248:478-486.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 478-486
-
-
Schreiber, G.1
Fersht, A.R.2
-
23
-
-
44349171796
-
Structural insights into the mechanism of pH-dependent ligand binding and release by the cation-dependent mannose 6-phosphate receptor
-
Olson LJ, Hindsgaul O, Dahms NM, Kim JJ. Structural insights into the mechanism of pH-dependent ligand binding and release by the cation-dependent mannose 6-phosphate receptor. J Biol Chem 2008;283:10124-10134.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 10124-10134
-
-
Olson, L.J.1
Hindsgaul, O.2
Dahms, N.M.3
Kim, J.J.4
-
24
-
-
33646861187
-
Peptidebinding motifs for the I-Ad MHC class II molecule: Alternate pH-dependent binding behavior
-
Chaves FA, Richards KA, Torelli A, Wedekind J, Sant AJ. Peptidebinding motifs for the I-Ad MHC class II molecule: alternate pH-dependent binding behavior. Biochemistry 2006;45:6426-6433.
-
(2006)
Biochemistry
, vol.45
, pp. 6426-6433
-
-
Chaves, F.A.1
Richards, K.A.2
Torelli, A.3
Wedekind, J.4
Sant, A.J.5
-
25
-
-
38049079847
-
Prion protein structure is affected by pH-dependent interaction with membranes: A study in a model system
-
Re F, Sesana S, Barbiroli A, Bonomi F, Cazzaniga E, Lonati E, Bulbarelli A, Masserini M. Prion protein structure is affected by pH-dependent interaction with membranes: a study in a model system. FEBS Lett 2008;582:215-220.
-
(2008)
FEBS Lett.
, vol.582
, pp. 215-220
-
-
Re, F.1
Sesana, S.2
Barbiroli, A.3
Bonomi, F.4
Cazzaniga, E.5
Lonati, E.6
Bulbarelli, A.7
Masserini, M.8
-
26
-
-
27144462716
-
PH-Dependent interaction of cytochrome c with mitochondrial mimetic membranes: The role of an array of positively charged amino acids
-
Kawai C, Prado FM, Nunes GL, Di Mascio P, Carmona-Ribeiro AM, Nantes IL. pH-Dependent interaction of cytochrome c with mitochondrial mimetic membranes: the role of an array of positively charged amino acids. J Biol Chem 2005;280:34709-34717.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 34709-34717
-
-
Kawai, C.1
Prado, F.M.2
Nunes, G.L.3
Mascio, P.D.4
Carmona-Ribeiro, A.M.5
Nantes, I.L.6
-
27
-
-
0001537740
-
PH-dependent interaction of chromogranin A with integral membrane proteins of secretory vesicle including 260-kDa protein reactive to inositol 1, 4, 5-triphosphate receptor antibody
-
Yoo SH. pH-dependent interaction of chromogranin A with integral membrane proteins of secretory vesicle including 260-kDa protein reactive to inositol 1, 4, 5-triphosphate receptor antibody. J Biol Chem 1994;269:12001-12006.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 12001-12006
-
-
Yoo, S.H.1
-
28
-
-
0027464626
-
PH-dependent stability and membrane interaction of the poreforming domain of colicin A
-
Muga A, Gonzalez-Manas JM, Lakey JH, Pattus F, Surewicz WK. pH-dependent stability and membrane interaction of the poreforming domain of colicin A. J Biol Chem 1993;268:1553-1557.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 1553-1557
-
-
Muga, A.1
Gonzalez-Manas, J.M.2
Lakey, J.H.3
Pattus, F.4
Surewicz, W.K.5
-
29
-
-
0025268582
-
PH-dependent interaction of amphiphilic polypeptide poly (Lys-Aib-Leu-Aib) with lipid bilayer membrane
-
Kono K, Kimura S, Imanishi Y. pH-dependent interaction of amphiphilic polypeptide poly (Lys-Aib-Leu-Aib) with lipid bilayer membrane. Biochemistry 1990;29:3631-3637.
-
(1990)
Biochemistry
, vol.29
, pp. 3631-3637
-
-
Kono, K.1
Kimura, S.2
Imanishi, Y.3
-
30
-
-
36949029387
-
PH-dependent assembly of DNA-gold nanoparticles based on the i-motif
-
Seela F, Budow S. pH-dependent assembly of DNA-gold nanoparticles based on the i-motif. Nucleosides Nucleotides Nucleic Acids 2007;26:755-759.
-
(2007)
Nucleosides Nucleotides Nucleic Acids
, vol.26
, pp. 755-759
-
-
Seela, F.1
Budow, S.2
-
31
-
-
11144292822
-
Investigation of pH-dependent DNA-metal ion interactions by surface plasmon resonance
-
Wood DO, Lee JS. Investigation of pH-dependent DNA-metal ion interactions by surface plasmon resonance. J Inorg Biochem 2005;99:566-574.
-
(2005)
J. Inorg Biochem.
, vol.99
, pp. 566-574
-
-
Wood, D.O.1
Lee, J.S.2
-
32
-
-
34250195337
-
Oligonucleotides containing 6-aza-20-deoxyuridine: Synthesis, nucleobase protection, pH-dependent duplex stability, and metal-DNA formation
-
Seela F, Chittepu P. Oligonucleotides containing 6-aza-20-deoxyuridine: synthesis, nucleobase protection, pH-dependent duplex stability, and metal-DNA formation. J Org Chem 2007;72:4358-4366.
-
(2007)
J. Org Chem.
, vol.72
, pp. 4358-4366
-
-
Seela, F.1
Chittepu, P.2
-
33
-
-
0030881494
-
PH-dependent specific binding and combing of DNA
-
Allemand JF, Bensimon D, Jullien L, Bensimon A, Croquette V. pH-dependent specific binding and combing of DNA. Biophys J 1997;73:2064-2070.
-
(1997)
Biophys. J.
, vol.73
, pp. 2064-2070
-
-
Allemand, J.F.1
Bensimon, D.2
Jullien, L.3
Bensimon, A.4
Croquette, V.5
-
34
-
-
3142764042
-
Time-and pH-dependent colon-specific drug delivery for orally administered diclofenac sodium and 5-aminosalicylic acid
-
Cheng G, An F, Zou MJ, Sun J, Hao XH, He YX. Time-and pH-dependent colon-specific drug delivery for orally administered diclofenac sodium and 5-aminosalicylic acid. World J Gastroenterol 2004;10:1769-1774.
-
(2004)
World J. Gastroenterol.
, vol.10
, pp. 1769-1774
-
-
Cheng, G.1
An, F.2
Zou, M.J.3
Sun, J.4
Hao, X.H.5
He, Y.X.6
-
35
-
-
61649121922
-
Design, Development and Optimization of a Novel Time and pH-Dependent Colon Targeted Drug Delivery System
-
Patel MM, Shah TJ, Amin AF, Shah NN. Design, Development and Optimization of a Novel Time and pH-Dependent Colon Targeted Drug Delivery System. Pharm Dev Technol 2009;14:62-69.
-
(2009)
Pharm. Dev. Technol.
, vol.14
, pp. 62-69
-
-
Patel, M.M.1
Shah, T.J.2
Amin, A.F.3
Shah, N.N.4
-
36
-
-
15444366107
-
Concentration and pH dependent aggregation of hydrophobic drug molecules and relevance to oral bioavailability
-
Frenkel YV, Clark AD, Jr, Das K, Wang YH, Lewi PJ, Janssen PA, Arnold E. Concentration and pH dependent aggregation of hydrophobic drug molecules and relevance to oral bioavailability. J Med Chem 2005;48:1974-1983.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 1974-1983
-
-
Frenkel, Y.V.1
Clark Jr., A.D.2
Das, K.3
Wang, Y.H.4
Lewi, P.J.5
Janssen, P.A.6
Arnold, E.7
-
37
-
-
72849108234
-
Adaptations of proteins to cellular and subcellular pH
-
Garcia-Moreno B. Adaptations of proteins to cellular and subcellular pH. J Biol 2009;8:98.
-
(2009)
J. Biol.
, vol.8
, pp. 98
-
-
Garcia-Moreno, B.1
-
38
-
-
33745711882
-
Subcellular pH and predicted pH-dependent features of proteins
-
Chan P, Lovric J, Warwicker J. Subcellular pH and predicted pH-dependent features of proteins. Proteomics 2006;6:3494-3501.
-
(2006)
Proteomics
, vol.6
, pp. 3494-3501
-
-
Chan, P.1
Lovric, J.2
Warwicker, J.3
-
39
-
-
33748476481
-
Electrostatic properties of protein-protein complexes
-
Kundrotas PJ, Alexov E. Electrostatic properties of protein-protein complexes. Biophys J 2006;91:1724-1736.
-
(2006)
Biophys. J.
, vol.91
, pp. 1724-1736
-
-
Kundrotas, P.J.1
Alexov, E.2
-
40
-
-
64049083918
-
Protein-protein interaction as a predictor of subcellular location
-
Shin CJ, Wong S, Davis MJ, Ragan MA. Protein-protein interaction as a predictor of subcellular location. BMC Syst Biol 2009;3:28.
-
(2009)
BMC Syst Biol.
, vol.3
, pp. 28
-
-
Shin, C.J.1
Wong, S.2
Davis, M.J.3
Ragan, M.A.4
-
41
-
-
70450248465
-
Evidence for the adaptation of protein pH-dependence to subcellular pH
-
Chan P, Warwicker J. Evidence for the adaptation of protein pH-dependence to subcellular pH. BMC Biol 2009;7:69.
-
(2009)
BMC Biol.
, vol.7
, pp. 69
-
-
Chan, P.1
Warwicker, J.2
-
42
-
-
0031588694
-
Relation between amino acid composition and cellular location of proteins
-
Cedano J, Aloy P, Perez-Pons J, Querol E. Relation between amino acid composition and cellular location of proteins. J Mol Biol 1997;266:594-600.
-
(1997)
J. Mol. Biol.
, vol.266
, pp. 594-600
-
-
Cedano, J.1
Aloy, P.2
Perez-Pons, J.3
Querol, E.4
-
43
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
Emanuelsson O, Nielsen H, Brunak S, Heijne G. Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 2000;300:1005-1016.
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
Heijne, G.4
-
44
-
-
0035874091
-
Prediction of protein cellular attributes using pseudoamino acid composition
-
Chou KC. Prediction of protein cellular attributes using pseudoamino acid composition. Proteins 2001;43:246-255.
-
(2001)
Proteins
, vol.43
, pp. 246-255
-
-
Chou, K.C.1
-
45
-
-
0037195776
-
Using functional domain composition and support vector machines for prediction of protein subcellular location
-
Chou KC. Using functional domain composition and support vector machines for prediction of protein subcellular location. J Biol Chem 2002;277:45765- 45769.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 45765-45769
-
-
Chou, K.C.1
-
46
-
-
3242891478
-
LOCnet and LOCtarget: Sub-cellular localization for structural genomics targets
-
Web Server issue
-
Nair R, Rost B. LOCnet and LOCtarget: sub-cellular localization for structural genomics targets. Nucleic Acids Res 2004;32(Web Server issue):W517-W521.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Nair, R.1
Rost, B.2
-
47
-
-
16244398103
-
Mimicking cellular sorting improves prediction of subcellular localization
-
Nair R, Rost B. Mimicking cellular sorting improves prediction of subcellular localization. J Mol Biol 2005;348:85-100.
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 85-100
-
-
Nair, R.1
Rost, B.2
-
48
-
-
40549096793
-
EpiLoc: A (working) text-based system for predicting protein subcellular location
-
Brady S, Shatkay H. EpiLoc: a (working) text-based system for predicting protein subcellular location. Pac Symp Biocomput 2008:604-615.
-
(2008)
Pac Symp Biocomput
, pp. 604-615
-
-
Brady, S.1
Shatkay, H.2
-
49
-
-
0036358850
-
Predicting the sub-cellular location of proteins from text using support vector machines
-
Stapley BJ, Kelley LA, Sternberg MJ. Predicting the sub-cellular location of proteins from text using support vector machines. Pac Symp Biocomput 2002:374-385.
-
(2002)
Pac Symp Biocomput
, pp. 374-385
-
-
Stapley, B.J.1
Kelley, L.A.2
Sternberg, M.J.3
-
50
-
-
34447304880
-
Sher-Loc: High-accuracy prediction of protein subcellular localization by integrating text and protein sequence data
-
Shatkay H, Hoglund A, Brady S, Blum T, Donnes P, Kohlbacher O. Sher-Loc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data. Bioinformatics 2007;23:1410-1417.
-
(2007)
Bioinformatics
, vol.23
, pp. 1410-1417
-
-
Shatkay, H.1
Hoglund, A.2
Brady, S.3
Blum, T.4
Donnes, P.5
Kohlbacher, O.6
-
51
-
-
42549103931
-
Combining algorithms to predict bacterial protein sub-cellular location: Parallel versus concurrent implementations
-
Taylor PD, Attwood TK, Flower DR. Combining algorithms to predict bacterial protein sub-cellular location: parallel versus concurrent implementations. Bioinformation 2006;1:285-289.
-
(2006)
Bioinformation
, vol.1
, pp. 285-289
-
-
Taylor, P.D.1
Attwood, T.K.2
Flower, D.R.3
-
53
-
-
77951666843
-
Predicting subcellular location of apoptosis proteins based on wavelet transform and support vector machine
-
Qiu JD, Luo SH, Huang JH, Sun XY, Liang RP. Predicting subcellular location of apoptosis proteins based on wavelet transform and support vector machine. Amino Acids 2010;38:1201-1208.
-
(2010)
Amino Acids
, vol.38
, pp. 1201-1208
-
-
Qiu, J.D.1
Luo, S.H.2
Huang, J.H.3
Sun, X.Y.4
Liang, R.P.5
-
54
-
-
54149090595
-
Protein subcellular location prediction using optimally weighted fuzzy k-NN algorithm
-
Nasibov E, Kandemir-Cavas C. Protein subcellular location prediction using optimally weighted fuzzy k-NN algorithm. Comput Biol Chem 2008;32:448-451.
-
(2008)
Comput Biol. Chem.
, vol.32
, pp. 448-451
-
-
Nasibov, E.1
Kandemir-Cavas, C.2
-
55
-
-
34547584314
-
Advantages of combined transmembrane topology and signal peptide prediction-the Phobius web server
-
Web Server issue
-
Kall L, Krogh A, Sonnhammer EL. Advantages of combined transmembrane topology and signal peptide prediction-the Phobius web server. Nucleic Acids Res 2007;35(Web Server issue):W429-W432.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Kall, L.1
Krogh, A.2
Sonnhammer, E.L.3
-
56
-
-
0345490814
-
Secreted protein prediction system combining CJ-SPHMM, TMHMM, and PSORT
-
Chen Y, Yu P, Luo J, Jiang Y. Secreted protein prediction system combining CJ-SPHMM, TMHMM, and PSORT. Mamm Genome 2003;14:859-865.
-
(2003)
Mamm Genome
, vol.14
, pp. 859-865
-
-
Chen, Y.1
Yu, P.2
Luo, J.3
Jiang, Y.4
-
57
-
-
42549137778
-
LocateP: Genome-scale subcellular-location predictor for bacterial proteins
-
Zhou M, Boekhorst J, Francke C, Siezen RJ. LocateP: genome-scale subcellular-location predictor for bacterial proteins. BMC Bioinformatics 2008;9:173.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 173
-
-
Zhou, M.1
Boekhorst, J.2
Francke, C.3
Siezen, R.J.4
-
58
-
-
76449106967
-
Predicting protein subcellular location: Exploiting amino acid based sequence of feature spaces and fusion of diverse classifiers
-
Khan A, Majid A, Choi TS. Predicting protein subcellular location: exploiting amino acid based sequence of feature spaces and fusion of diverse classifiers. Amino Acids 2010;38:347-350.
-
(2010)
Amino Acids
, vol.38
, pp. 347-350
-
-
Khan, A.1
Majid, A.2
Choi, T.S.3
-
59
-
-
58149185126
-
BRENDA, AMENDA and FRENDA the enzyme information system: New content and tools in 2009
-
Database issue
-
Chang A, Scheer M, Grote A, Schomburg I, Schomburg D. BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009. Nucleic Acids Res 2009;37(Database issue):D588-D592.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Chang, A.1
Scheer, M.2
Grote, A.3
Schomburg, I.4
Schomburg, D.5
-
60
-
-
33846114132
-
BRENDA, AMENDA and FRENDA: The enzyme information system in 2007
-
Database issue
-
Barthelmes J, Ebeling C, Chang A, Schomburg I, Schomburg D. BRENDA, AMENDA and FRENDA: the enzyme information system in 2007. Nucleic Acids Res 2007;35(Database issue):D511-D514.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Barthelmes, J.1
Ebeling, C.2
Chang, A.3
Schomburg, I.4
Schomburg, D.5
-
61
-
-
1642499126
-
Numerical calculations of the pH of maximal protein stability. The effect of the sequence composition and 3D structure
-
Alexov E. Numerical calculations of the pH of maximal protein stability. The effect of the sequence composition and 3D structure. Eur J Biochem 2004;271:173-185.
-
(2004)
Eur. J. Biochem.
, vol.271
, pp. 173-185
-
-
Alexov, E.1
|