메뉴 건너뛰기




Volumn 38, Issue 1, 2010, Pages 347-350

Predicting protein subcellular location: Exploiting amino acid based sequence of feature spaces and fusion of diverse classifiers

Author keywords

Amphiphilic pseudo amino acid composition; Ensemble classifier; Protein subcellular location

Indexed keywords

AMINO ACID;

EID: 76449106967     PISSN: 09394451     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00726-009-0238-7     Document Type: Article
Times cited : (35)

References (16)
  • 1
    • 33748944288 scopus 로고    scopus 로고
    • Predicting protein subcellular location by fusing multiple classifiers
    • DOI 10.1002/jcb.20879
    • KC Chou HB Shen 2006 Predicting protein subcellular location by fusing multiple classifiers J Cell Biochem 99 517 527 10.1002/jcb.20879 10.1002/jcb.20879 1:CAS:528:DC%2BD28XhtVSktL3J 16639720 (Pubitemid 44435568)
    • (2006) Journal of Cellular Biochemistry , vol.99 , Issue.2 , pp. 517-527
    • Chou, K.-C.1    Shen, H.-B.2
  • 3
    • 43749098983 scopus 로고    scopus 로고
    • Proximity based GPCRs prediction in transform domain
    • 10.1016/j.bbrc.2008.04.074 10.1016/j.bbrc.2008.04.074 1:CAS:528:DC%2BD1cXmsVehu7o%3D 18439905
    • A Khan MF Khan TS Choi 2008 Proximity based GPCRs prediction in transform domain Biochem Biophys Res Commun 371 411 415 10.1016/j.bbrc.2008.04.074 10.1016/j.bbrc.2008.04.074 1:CAS:528:DC%2BD1cXmsVehu7o%3D 18439905
    • (2008) Biochem Biophys Res Commun , vol.371 , pp. 411-415
    • Khan, A.1    Khan, M.F.2    Choi, T.S.3
  • 4
    • 0037403516 scopus 로고    scopus 로고
    • Measures of diversity in classifier ensembles and their relationship with the ensemble accuracy
    • 10.1023/A:1022859003006 10.1023/A:1022859003006
    • LI Kuncheva CJ Whitaker 2003 Measures of diversity in classifier ensembles and their relationship with the ensemble accuracy Mach Learn 51 181 207 10.1023/A:1022859003006 10.1023/A:1022859003006
    • (2003) Mach Learn , vol.51 , pp. 181-207
    • Kuncheva, L.I.1    Whitaker, C.J.2
  • 5
    • 33646871614 scopus 로고    scopus 로고
    • An ensemble of K-local hyperplanes for predicting protein-protein interactions
    • DOI 10.1093/bioinformatics/btl055
    • L Nanni A Lumini 2006 An ensemble of K-local hyperplane for predicting protein-protein interactions Bioinformatics 22 1207 1210 10.1093/bioinformatics/ btl055 10.1093/bioinformatics/btl055 1:CAS:528:DC%2BD28Xktlaku7g%3D 16481334 (Pubitemid 43779012)
    • (2006) Bioinformatics , vol.22 , Issue.10 , pp. 1207-1210
    • Nanni, L.1    Lumini, A.2
  • 6
    • 33846069758 scopus 로고    scopus 로고
    • Ensemblator: An ensemble of classifiers for reliable classification of biological data
    • DOI 10.1016/j.patrec.2006.10.012, PII S0167865506002650
    • L Nanni A Lumini 2007 Ensemblator: an ensemble of classifiers for reliable classification of biological data Pattern Recognit Lett 28 622 630 10.1016/j.patrec.2006.10.012 10.1016/j.patrec.2006.10.012 (Pubitemid 46073220)
    • (2007) Pattern Recognition Letters , vol.28 , Issue.5 , pp. 622-630
    • Nanni, L.1    Lumini, A.2
  • 7
    • 50949084329 scopus 로고    scopus 로고
    • An ensemble of support vector machines for predicting the membrane protein type directly from the amino acid sequence
    • 10.1007/s00726-008-0083-0 10.1007/s00726-008-0083-0 1:CAS:528: DC%2BD1cXhtVGntr%2FM 18427715
    • L Nanni A Lumini 2008 An ensemble of support vector machines for predicting the membrane protein type directly from the amino acid sequence Amino Acids 35 573 580 10.1007/s00726-008-0083-0 10.1007/s00726-008-0083-0 1:CAS:528:DC%2BD1cXhtVGntr%2FM 18427715
    • (2008) Amino Acids , vol.35 , pp. 573-580
    • Nanni, L.1    Lumini, A.2
  • 8
    • 39549116279 scopus 로고    scopus 로고
    • A genetic approach for building different alphabets for peptide and protein classification
    • DOI 10.1186/1471-2105-9-45
    • L Nanni A Lumini 2008 A genetic approach for building different alphabets for peptide and protein classification BMC Bioinformatics 9 45 10.1186/1471-2105-9-45 10.1186/1471-2105-9-45 18218100 (Pubitemid 351280032)
    • (2008) BMC Bioinformatics , vol.9 , pp. 45
    • Nanni, L.1    Lumini, A.2
  • 9
    • 67349167911 scopus 로고    scopus 로고
    • Using ensemble of classifiers in Bioinformatics
    • HPAM Vogel (eds). Nova Science Publishers Inc New York
    • Nanni L, Lumini A (2008c) Using ensemble of classifiers in Bioinformatics. In: Vogel HPAM (ed) Machine learning research progress. Nova Science Publishers Inc, New York
    • (2008) Machine Learning Research Progress
    • Nanni, L.1    Lumini, A.2
  • 10
    • 37849032668 scopus 로고    scopus 로고
    • Unite and conquer': Enhanced prediction of protein subcellular localization by integrating multiple specialized tools
    • 10.1186/1471-2105-8-420 10.1186/1471-2105-8-420 17967180
    • Y Shen G Burger 2007 'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools BMC Bioinformatics 8 420 10.1186/1471-2105-8-420 10.1186/1471-2105-8-420 17967180
    • (2007) BMC Bioinformatics , vol.8 , pp. 420
    • Shen, Y.1    Burger, G.2
  • 11
    • 33847080827 scopus 로고    scopus 로고
    • Gpos-PLoc: An ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins
    • DOI 10.1093/protein/gzl053
    • HB Shen KC Chou 2007 Gpos-PLoc: an ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins Protein Eng Des Sel 20 39 46 10.1093/protein/gzl053 10.1093/protein/gzl053 1:CAS:528: DC%2BD2sXhvFWmtr8%3D 17244638 (Pubitemid 46269434)
    • (2007) Protein Engineering, Design and Selection , vol.20 , Issue.1 , pp. 39-46
    • Shen, H.-B.1    Chou, K.-C.2
  • 12
    • 33847668306 scopus 로고    scopus 로고
    • Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites
    • DOI 10.1016/j.bbrc.2007.02.071, PII S0006291X07003452
    • HB Shen KC Chou 2007 Hum-mPLoc: an ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites Biochem Biophys Res Commun 355 1006 1011 10.1016/j.bbrc.2007.02. 071 10.1016/j.bbrc.2007.02.071 1:CAS:528:DC%2BD2sXivVahur0%3D 17346678 (Pubitemid 46366927)
    • (2007) Biochemical and Biophysical Research Communications , vol.355 , Issue.4 , pp. 1006-1011
    • Shen, H.-B.1    Chou, K.-C.2
  • 13
    • 33847260136 scopus 로고    scopus 로고
    • Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells
    • DOI 10.1002/bip.20640
    • HB Shen KC Chou 2007 Virus-PLoc: a fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells Biopolymers 85 233 240 10.1002/bip.20640 10.1002/bip.20640 1:CAS:528: DC%2BD2sXhvFWhs70%3D 17120237 (Pubitemid 46318480)
    • (2007) Biopolymers , vol.85 , Issue.3 , pp. 233-240
    • Shen, H.-B.1    Chou, K.-C.2
  • 14
    • 33847637338 scopus 로고    scopus 로고
    • Euk-PLoc: An ensemble classifier for large-scale eukaryotic protein subcellular location prediction
    • DOI 10.1007/s00726-006-0478-8
    • HB Shen J Yang KC Chou 2007 Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction Amino Acids 33 57 67 10.1007/s00726-006-0478-8 10.1007/s00726-006-0478-8 1:CAS:528: DC%2BD2sXotVWru7Y%3D 17235453 (Pubitemid 47101466)
    • (2007) Amino Acids , vol.33 , Issue.1 , pp. 57-67
    • Shen, H.-B.1    Yang, J.2    Chou, K.-C.3
  • 15
    • 34447106453 scopus 로고    scopus 로고
    • Prediction of protein subcellular localization by support vector machines using multi-scale energy and pseudo amino acid composition
    • DOI 10.1007/s00726-006-0475-y
    • JY Shi SW Zhang Q Pan YM Cheng J Xie 2007 Prediction of protein subcellular localization by support vector machines using multi-scale energy and pseudo amino acid composition Amino Acids 33 69 74 10.1007/s00726-006-0475-y 10.1007/s00726-006-0475-y 1:CAS:528:DC%2BD2sXotVWru7g%3D 17235454 (Pubitemid 47101465)
    • (2007) Amino Acids , vol.33 , Issue.1 , pp. 69-74
    • Shi, J.-Y.1    Zhang, S.-W.2    Pan, Q.3    Cheng, Y.-M.4    Xie, J.5
  • 16
    • 1942505330 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions
    • DOI 10.1110/ps.03479604
    • C-S Yu C-J Lin J-K Hwang 2004 Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions Protein Sci 13 1402 1406 10.1110/ps.03479604 10.1110/ps.03479604 1:CAS:528:DC%2BD2cXjsFKks74%3D 15096640 (Pubitemid 38526105)
    • (2004) Protein Science , vol.13 , Issue.5 , pp. 1402-1406
    • Yu, C.-S.1    Lin, C.-J.2    Hwang, J.-K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.