Contrasting patterns of phylogeographic relationships in sympatric sister species of ironclad beetles (Zopheridae: Phloeodes spp.) in California's Transverse Ranges

BMC Evolutionary Biology

Volumn 10, Issue 1, 2010, Pages

  Polihronakis, Maxi ^a   Caterino, Michael S ^a  

^a SANTA BARBARA MUSEUM OF NATURAL HISTORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BEETLE; COMPARATIVE STUDY; DEMOGRAPHY; DIVERGENCE; EVOLUTIONARY THEORY; GENETIC DIFFERENTIATION; HABITAT TYPE; PHYLOGEOGRAPHY; RANGE EXPANSION; SPECIES DIVERSITY; SYMPATRY; TIMESCALE;

CALIFORNIA; TRANSVERSE RANGES; UNITED STATES;

COLEOPTERA; ZOPHERIDAE;

AZLOCILLIN;

ANIMAL; ARTICLE; BEETLE; BIOLOGICAL MODEL; CLASSIFICATION; DNA SEQUENCE; ECOSYSTEM; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; MOLECULAR EVOLUTION; PHYLOGENY; POPULATION GENETICS; UNITED STATES;

ANIMALS; AZLOCILLIN; BEETLES; CALIFORNIA; ECOSYSTEM; EVOLUTION, MOLECULAR; GENETIC VARIATION; GENETICS, POPULATION; GEOGRAPHY; MODELS, GENETIC; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 77955639991     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-195     Document Type: Article

References (34)

1. Patterns of molecular evolution and diversification in a biodiversity hotspot: the California Floristic Province. R Calsbeek JN Thompson JE Richardson, Molecular Ecology 2003 12 1021 1029 10.1046/j.1365-294X.2003.01794.x 12753220
2. Comparative phylogeography of woodland reptiles in California: repeated patterns of cladogenesis and population expansion. CR Feldman GS Spicer, Molecular Ecology 2006 15 2201 2222 10.1111/j.1365-294X.2006.02930.x 16780435
3. Influence of life-history variation on the genetic structure of two sympatric salamander taxa. CA Steele J Baumsteiger A Storfer, Molecular Ecology 2009 18 1629 1639 10.1111/j.1365-294X.2009.04135.x 19302353
4. Comparative phylogeography of sympatric sister species, Clevelandia ios and Eucyclogobius newberryi (Teleostei, Gobiidae), across the California Transition Zone. MN Dawson KD Louie M Barlow DK Jacob CC Swift, Molecular Ecology 2002 11 1065 1075 10.1046/j.1365-294X.2002.01503.x 12030983
5. A phylogenetic analysis of the tribe Zoperini with a review of the species and generic classification (Coleoptera: Zopheridae). IA Foley MA Ivie, Zootaxa 2008 1928 1 72
6. Re-evaluation of the genera Phloeodes, Noserus, and Nosoderma (Coleoptera: Zopheridae) with a description of a new species of Nosoderma from northern Mexico. M Garcia-Paris M Coca-Abia G Parra-Olea, Annales Societe Entomologique de France 2006 42 215 230
7. A revision of the American components of the tenebrionid subfamily Tentyriinae. TL Casey, Proceedings of the Washington Academy of Sciences 1907 9 275 522
8. Katalog der Tenebrioniden (Col.: Heteromera). Teil I. (abgeschlossen August 1936). H Gebien, Pubblicasioni del Museo Entomologico "Pietro rossi" 1936 2 505 883
9. A new statistical method for haplotype reconstruction from population data. M Stephens NJ Smith P Donnely, American Journal of Human Genetics 2001 68 978 989 10.1086/319501 11254454
10. Accounting for decay of linkage disequilibrium in haplotype inference and missing data imputation. M Stephens P Scheet, American Journal of Human Genetics 2005 76 449 462 10.1086/428594 15700229
11. Intraspecific gene genealogies: trees grafting into networks. DK Posada KA Crandall, Trends in Ecology & Evolution 2001 16 37 45
12. Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. AVZ Brower, Proceedings of the National Academy of Sciences 1994 91 6491 6495 10.1073/pnas.91.14.6491 (Pubitemid 24200687)
13. Revisiting the insect mitochondrial molecular clock: the mid-Aegean trench calibration. A Papadopoulou I Anastasiou AP Vogler, Molecular Biology and Evolution 2010 20167609
14. Falling apart and merging: diversification of slender salamanders (Plethodontidae: Batrachoseps) in the American West. EL Jockusch DB Wake, Biological Journal of the Linnean Society 2002 76 361 391 10.1111/j.1095-8312. 2002.tb01703.x
15. Diverse historical processes shape deep phylogeographical divergence in the pollinating seed parasite Greya politella. KA Rich JN Thompson CC Fernandez, Molecular Ecology 2008 17 2430 2448 10.1111/j.1365-294X.2008.03754.x 18422933
16. Multilocus phylogeography of the flightless darkling beetle Nyctoporis carinata (Coleoptera: Tenebrionidae) in the California Floristic Province: deciphering an evolutionary mosaic. M Polihronakis MS Caterino, Biological Journal of the Linnean Society 2010 99 424 444 10.1111/j.1095-8312.2009.01360.x
17. Evolution, Weighting, and Phylogenetic Utility of Mitochondrial Gene Sequences and a Compilation of Conserved Polymerase Chain Reaction Primers. C Simon F Frati A Beckenback BJ Crespi H Liu P Flook, Annals of the Entomological Society of America 1994 87 651 701
18. Evaluating nuclear protein-coding genes for phylogenetic utility in beetles. AL Wild DR Maddison, Molecular Phylogenetics and Evolution 2008 48 877 891 10.1016/j.ympev.2008.05.023 18644735
19. Se-Al. A Rambaut, 2007
20. A simple and robust statistical test for detecting the presence of recombination. TC Bruen H Phillipe D Bryant, Genetics 2006 172 2665 2681 10.1534/genetics.105.048975 16489234
21. SplitsTree: A program for analyzing and visualizing evolutionary data. DH Huson, Bioinformatics 1998 14 68 73 10.1093/bioinformatics/14.1.68 9520503
22. Application of phylogenetic networks in evolutionary studies. DH Huson D Bryant, Molecular Biology and Evolution 2006 23 254 267 10.1093/molbev/msj030 16221896
23. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. F Tajima, Genetics 1989 123 585 595 2513255
24. ARLEQUIN ver. 3.0: An integrated software package for population genetics data analysis. L Excoffier G Laval S Schneider, Evolutionary Bioinformatics Online 2005 1 47 50 19325852
25. MrBayes: Bayesian inference of phylogeny. JP Huelsenbeck F Ronquist, Bioinformatics 2001 13 68 73
26. MrModeltest v2. Program distributed by author. JAA Nylander, Evolutionary Biology Centre, Uppsala University 2004
27. PAUP*. DL Swofford, Sunderland, Massachusetts: Sinauer Associates 2002
28. TCS: a computer program to estimate gene genealogies. M Clement D Posada KA Crandall, Molecular Ecology 2000 9 1657 1659 10.1046/j.1365-294x.2000.01020.x 11050560
29. Analysis of Molecular Variance Inferred From Metric Distances Among DNA Haplotypes: Application to Human Mitochondrial DNA Restriction Data. L Excoffier PE Smouse JM Quattro, Genetics 1992 131 479 491 1644282
30. Toward a better understanding of the "transverse range break": lineage diversification in southern California. S Chatzimanolis MS Caterino, Evolution 2007 61 2127 2141 10.1111/j.1558-5646.2007.00186.x 17767585
31. Limited phylogeographic structure in the flightless ground beetle, Calathus ruficollis, in southern California. S Chatzimanolis MS Caterino, Diversity and Distributions 2007 13 498 509 10.1111/j.1472-4642.2007.00352.x (Pubitemid 47262877)
32. Conservation genetics of three flightless beetle species in southern California. MS Caterino S Chatzimanolis, Conservation Genetics 2009 10 203 216 10.1007/s10592-008-9548-7
33. Estimation of past demographic parameters form the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. S Schneider L Excoffier, Genetics 1999 152 1079 1089 10388826
34. Population growth makes waves in the distribution of pairwise genetic differences. AR Rogers H Harpending, Molecual Biology and Evolution 1992 9 552 569