Limited phylogeographic structure in the flightless ground beetle, Calathus ruficollis, in southern California

Diversity and Distributions

Volumn 13, Issue 5, 2007, Pages 498-509

  Chatzimanolis, Stylianos ^a   Caterino, Michael S ^a  

^a SANTA BARBARA MUSEUM OF NATURAL HISTORY   (United States)

Author keywords

AMOVA; California Floristic Province; Carabidae; Gene flow; Mismatch distribution; Population expansion

Indexed keywords

BAYESIAN ANALYSIS; BEETLE; DEMOGRAPHY; GENE FLOW; HYPOTHESIS TESTING; MITOCHONDRION; MOLECULAR ANALYSIS; PARSIMONY ANALYSIS; PHYLOGENETICS; PHYLOGEOGRAPHY;

CALIFORNIA; CHANNEL ISLANDS [CALIFORNIA]; NORTH AMERICA; SANTA CRUZ ISLAND; UNITED STATES;

CALATHUS RUFICOLLIS; CARABIDAE; COLEOPTERA;

EID: 34547865709     PISSN: 13669516     EISSN: 14724642     Source Type: Journal    
DOI: 10.1111/j.1472-4642.2007.00352.x     Document Type: Article

References (56)

1. Avise, J.C. (2000) Phylogeograph: the history and formation of species. Harvard University Press, Cambridge, MA.
2. Ayoub, N.A. Riechert, S.E. (2004) Molecular evidence for Pleistocene glacial cycles driving diversification of a North American desert spider, Agelenopsis aperta. Molecular Ecology, 13, 3453 3465.
3. Ball, G.E. Negre, J. (1972) The taxonomy of the Nearctic species of the genus Calathus Bonelli (Coleoptera: Carabidae: Agonnini). Transactions of the American Entomological Society, 98, 412 533.
4. Bermingham, E. Moritz, C. (1998) Comparative phylogeography: concepts and applications. Molecular Ecology, 7, 367 369.
5. Bernardi, G. (2005) Phylogeography and demography of sympatric sister surfperch species, Embiotoca jacksoni and E. lateralis along the California coast: historical versus ecological factors. Evolution, 59, 386 394.
6. Brower, A.V.Z. (1994) Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proceedings of the National Academy of Sciences USA, 91, 6491 6495.
7. Burns, K.J. Barhoum, D.N. (2006) Population-level history of the wrentit (Chamaea fasciata): implications for comparative phylogeography in the California Floristic Province. Molecular Phylogenetics and Evolution, 38, 117 129.
8. Calsbeek, R., Thompson, J.N. Richardson, J.E. (2003) Patterns of molecular evolution and diversification in a biodiversity hotspot: the California Floristic Province. Molecular Ecology, 12, 1021 1029.
9. Caterino, M.S. (2006) California beetle faunistics: 100 years after Fall. Coleopterists Bulletin, 60, 177 191.
10. Clement, M., Posada, D. Crandall, K. (2000) tcs: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1660.
11. Crandall, K.A. Templeton, A.R. (1993) Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics, 134, 959 969.
12. Emerson, B.C., Oromi, P. Hewitt, G.M. (1999) MtDNA phylogeography and recent intra-island diversification among Canary Islands Calathus beetles. Molecular Phylogenetics and Evolution, 13, 149 158.
13. Emerson, B.C., Oromi, P. Hewitt, G.M. (2000) Interpreting the colonization of the Calathus (Coleoptera: Carabidae) on the Canary Islands and Madeira through the application of parametric bootstrap. Evolution, 54, 2081 2090.
14. Excoffier, L., Smouse, P. Quattro, J. (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479 491.
15. Excoffier, L., Laval, G. Schneider, S. (2005) arlequin version 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47 50.
16. Feldman, C.R. Spicer, G.S. (2006) Comparative phylogeography of woodland reptiles in California: repeated patterns of cladogenesis and population expansion. Molecular Ecology, 15, 2201 2222.
17. Fu, Y.X. (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915 925.
18. Harpending, H.C. (1994) Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology, 66, 591 600.
19. Huelsenbeck, J.P. Ronquist, F. (2001) mrbayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754 755.
20. Janzen, F.J., Krenz, J.G., Haselkorn, T.S., Brodie, E.D. Jr. Brodie, E.D. (2002) Molecular phylogeography of common garter snakes in western North America: implications for regional historical forces. Molecular Ecology, 11, 1739 1741.
21. Jockusch, E.L. Wake, D.B. (2002) Falling apart and merging: diversification of slender salamanders (Plethodontidae: Batrachoseps) in the American West. Biological Journal of the Linnean Society, 76, 361 391.
22. Junger, A. Johnson, D.L. (1980) Was there a quaternary land bridge to the northern Channel Islands? The California Islands: proceedings of a multidisciplinary symposium (ed. by D.M. Power), pp. 33 39. Santa Barbara Museum of Natural History, Santa Barbara, California.
23. Kuchta, S.R. Tan, A.-M. (2006) Lineage diversification on an evolving landscape: phylogeography of the California newt, Taricha torosa (Caudata: Salamandridae). Biological Journal of the Linnean Society, 89, 213 239.
24. Kuhner, M.K., Yamato, J. Felsenstein, J. (1998) Maximum likelihood estimation of population growth rates based on the coalescent. Genetics, 149, 429 434.
25. Landry, B., Powell, J.A. Sperling, F.A.H. (1999) Systematics of the Argyrotaenia franciscana (Lepidoptera: Torticidae) species group: evidence from mitochondrial DNA. Annals of the Entomological Society of America, 92, 40 46.
26. Lapointe, F.J. Rissler, L.J. (2005) Congruence, consensus and the comparative phylogeography of codistributed species in California. The American Naturalist, 166, 290 299.
27. Law, J.H. Crespi, B.J. (2002) The evolution of geographic parthenogenesis in Timema walking- sticks. Molecular Ecology, 11, 1471 1489.
28. Maldonado, J.E., Vila, C. Wayne, R.K. (2001) Tripartite genetic subdivisions in the ornate shrew (Sorex ornatus). Molecular Ecology, 10, 127 147.
29. Miller, S.E. (1985) The California Channel Islands - Past, present, and future: An entomological perspective. Entomology of the California channel islands, proceedings of the first symposium (ed. by A.S. Menke D.R. Miller), pp. 3 27. Santa Barbara Museum of Natural History, Santa Barbara, California.
30. Myers, N., Mittermeier, R.A., Mittermeier, C.G., de Fonseca, G.A.B. Kent, J. (2000) Biodiversity hotspots for conservation priorities. Nature, 403, 853 858.
31. Nice, C.C. Shapiro, A.M. (2001) Population genetic evidence of restricted gene flow between host races in the butterfly genus Mitoura (Lepidoptera: Lycaenidae). Annals of the Entomological Society of America, 94, 257 267.
32. Nylander, J.A.A. (2004) mrModeltest V2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.
33. Paquin, M.M., Wylie, G.D. Routman, E.J. (2006) Population structure of the giant garter snake, Thamnophis gigas. Conservation Genetics, 7, 25 36.
34. Philbrick, R. (1980) Distribution and evolution of endemic plants of the California Islands. The California Islands: proceedings of a multidisciplinary symposium (ed. by D.M. Power), pp. 173 187. Santa Barbara Museum of Natural History, Santa Barbara, California.
35. Pook, C.E., Wüster, W. Thorpe, R.S. (2000) Historical biogeography of the western rattlesnake (Serpentes: Viperidae: Crotalus viridis), inferred from mitochondrial DNA sequence information. Molecular Phylogenetics and Evolution., 15, 269 282.
36. Posada, D. Crandall, K.A. (2001) Intraspecific gene genealogies: trees grafting into networks. Trends in Ecology & Evolution, 16, 37 45.
37. Posada, D., Crandall, K.A. Templeton, A.R. (2000) geodis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology, 9, 487 488.
38. Rissler, L.J., Hijmans, R.J., Graham, C.H., Moritz, G. Wake, D.B. (2006) Phylogeographic lineages and species comparisons in conservation analyses: a case study of California herpetofauna. The American Naturalist, 167, 654 666.
39. Rodríguez-Robles, J.A., Denardo, D.F. Staub, R.E. (1999) Phylogeography of the California mountain kingsnake, Lampropeltis zonata (Colubridae). Molecular Ecology, 8, 1923 1934.
40. Rodríguez-Robles, J.A., Stewart, G.R. Papenfuss, T.J. (2001) Mitochondrial DNA-based phylogeography of North American rubber boas, Charina bottae. Molecular Phylogenetics and Evolution, 18, 227 237.
41. Rogers, A.R. (1995) Genetic evidence for a Pleistocene population explosion. Evolution, 49, 608 615.
42. Rogers, A.R. Harpending, H.C. (1992) Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552 569.
43. Shaffer, H.B., Pauly, G.B., Oliver, J.C. Trenham, P.C. (2004) The molecular phylogenetics of endangerment: cryptic variation and historical phylogeography of the California tiger salamander, Ambystoma californiense. Molecular Ecology, 13, 3033 3049.
44. Slatkin, M. (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics, 139, 457 462.
45. Sorlein, C.C. (1994) Faulting and uplift of the northern Channel Islands, California. The fourth California Islands symposium: update on the status of resources (ed. by W.L. Halvorson G.J. Maender), pp. 281 296. Santa Barbara Museum of Natural History, Santa Barbara, California.
46. Swofford, D. (2002) paup Sinauer Associates, Sunderland, Massachusetts.
47. Tamura, K. Nei, M. (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512 526.
48. Tan, A.-M. Wake, D.B. (1995) MtDNA phylogeography of the California newt, Taricha torosa (Caudata, Salamandridae). Molecular Phylogenetics and Evolution, 4, 383 394.
49. Templeton, A.R. (2004) Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology, 13, 789 809.
50. Templeton, A.R., Boerwinkle, E. Sing, C.F. (1987) A cladistic analysis of phenotypic association with haplotypes inferred from restriction endonuclease mapping I: basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics, 117, 343 351.
51. Templeton, A.R., Routman, E. Phillips, C.A. (1995) Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics, 140, 767 782.
52. Templeton, A.R. Sing, C.F. (1993) A cladistic analysis of phenotypic association with haplotypes inferred from restriction endonuclease mapping V: nested analyses with cladogram uncertainty and recombination. Genetics, 134, 659 669.
53. Wake, D.B. (1997) Incipient species formation in salamanders of the Ensatina complex. Proceedings of the National Academy of Sciences USA, 94, 7761 7767.
54. Wares, J.P. Cunningham, C.W. (2001) Phylogeography and historical ecology of the north Atlantic intertidal. Evolution, 55, 2455 2469.
55. Wilkin, D.H. (1993) California's changing climates and flora. The Jepson manual: higher plants of California (ed. by J.C. Hickman), pp. 55 58. University of California Press, Berkeley, California.
56. Zink, R.M., Barrowclough, G.F., Atwood, J.L. Blackwell-Rago, R.C. (2000) The shifting roles of dispersal and vicariance in biogeography. Proceedings of the Royal Society of London Series B, Biological Sciences, 267, 497 503.