Influence of life-history variation on the genetic structure of two sympatric salamander taxa

Molecular Ecology

Volumn 18, Issue 8, 2009, Pages 1629-1639

  Steele, C A ^a   Baumsteiger, J ^a,b   Storfer, Andrew ^a  

^a WASHINGTON STATE UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Comparative gene flow; Dicamptodon copei; Dicamptodon tenebrosus; Dispersal; Life history variation; Population structure

Indexed keywords

MICROSATELLITE DNA;

AMPHIBIA; ANIMAL; ARTICLE; BIOLOGICAL MODEL; CLASSIFICATION; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA SEQUENCE; GENE FLOW; GENE LINKAGE DISEQUILIBRIUM; GENETIC VARIABILITY; GENETICS; GENOTYPE; MOLECULAR EVOLUTION; PHYLOGENY; POPULATION GENETICS; SPECIES DIFFERENCE; UNITED STATES;

ANIMALS; CLUSTER ANALYSIS; EVOLUTION, MOLECULAR; GENE FLOW; GENETIC VARIATION; GENETICS, POPULATION; GENOTYPE; LINKAGE DISEQUILIBRIUM; MICROSATELLITE REPEATS; MODELS, GENETIC; NORTHWESTERN UNITED STATES; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; URODELA;

CRYPTOBRANCHIDAE; DICAMPTODON COPEI; DICAMPTODON TENEBROSUS; DICAMPTODONTIDAE; SALAMANDROIDEA;

EID: 63849135810     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04135.x     Document Type: Article

References (48)

1. Akaike H (1969) Fitting autoregressive models for prediction. Annals of the Institute of Statistical Mathematics, 21, 243 247.
2. Anderson EC, Thompson EA (2002) A model-based method for identifying species hybrids using multilocus genetic data. Genetics, 160, 1217 1229.
3. Bohonak AJ (1999) Dispersal, gene flow, and population structure. Quarterly Review of Biology, 74, 21 45.
4. Brown JH, Stevens GC, Kaufman DM (1996) The geographic range: size, shape, boundaries, and internal structure. Annual Review of Ecology and Systematics, 27, 597 623.
5. Bull EL, Wales BC (2001) Effects of disturbance on amphibians of conservation concern in eastern Oregon and Washington. Northwest Science, 75, 174 179.
6. Chenoweth SF, Hughes JM, Keenan CP, Lavery S (1998) Concordance between dispersal and mitochondrial gene flow: isolation by distance in a tropical teleost, Lates calcarifer (Australian barramundi). Heredity, 80, 187 197.
7. Dawson MN, Louie KD, Barlow M, Jacobs DK, Swift CC (2002) Comparative phylogeography of sympatric sister species, Clevelandia ios and Eucyclogobius newberryi (Teleostei, Gobiidae), across the California transition zone. Molecular Ecology, 11, 1065 1075.
8. Doherty PJ, Planes S, Mather P (1995) Gene flow and larval duration in seven species of fish from the Great Barrier Reef. Ecology, 76, 2373 2391.
9. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611 2620.
10. Excoffier L, Laval G, Schneider S (2005) Arlequin version 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47 50.
11. Glaubitz JC (2004) Convert: a user-friendly program to reformat diploid genotypic data for commonly used population genetic software packages. Molecular Ecology Notes, 4, 309 310.
12. Goudet J (2001) fstat, a Program to Estimate and Test Gene Diversities and Fixation Indices (version 2.9.3). Available at http://www2.unil.ch/popgen/ softwares/fstat.htm.
13. Hawkins CP, Murphy ML, Anderson NH, Wilzback MA (1983) Density of fish and salamanders in relation to riparian canopy and physical habitat in streams of the northwestern United States. Canadian Journal of Fisheries and Aquatic Science, 70, 109 119.
14. Hedrick PW (2005) A standardized genetic differentiation measure. Evolution, 59, 1633 1638.
15. Holt RD (2003) On the evolutionary ecology of species' ranges. Evolutionary Ecology Research, 5, 159 178.
16. Jones LLC, Corn PS (1989) Third specimen of a metamorphosed Cope's giant salamander (Dicamptodon copei). Northwestern Naturalist, 70, 37 38.
17. Kelly RP, Eernisse DJ (2007) Southern hospitality: a latitudinal gradient in gene flow in the marine environment. Evolution, 61, 700 707.
18. King RB, Lawson R (2001) Patterns of population subdivision and gene flow in three sympatric natricine snakes. Copeia, 2001, 602 614.
19. Kunin WE, Gaston KJ (1993) The biology of rarity: patterns, causes and consequences. Trends in Ecology & Evolution, 8, 298 301.
20. Larson A, Wake DB, Yanev KP (1984) Measuring gene flow among populations having high levels of genetic fragmentation. Genetics, 106, 293 308.
21. Lewis PO, Zaykin D (2001) Genetic Data Analysis: Computer Program for the Analysis of Allelic Data, Version 1.0. Available at http://www.eeb.uconn.edu/ people/plewis/software.php.
22. Loafman P, Jones L (1996) Dicamptodon copei (Cope's giant salamander). Metamorphosis and Predation. Herpetological Review, 27, 136.
23. Lourie SA, Green DM, Vincent ACJ (2005) Dispersal, habitat differences, and comparative phylogeography of Southeast Asian seahorses (Syngnathidae: Hippocampus). Molecular Ecology, 14, 1073 1094.
24. McDonald DB, Potts WK, Fitzpatrick JW, Woolfenden GE (1999) Contrasting genetic structures in sister species of North American scrub-jays. Proceedings of the Royal Society B: Biological Sciences, 266, 1117 1125.
25. Meirmans PG (2006) Using the amova framework to estimate a standardised genetic differentiation measure. Evolution, 60, 2399 2402.
26. Murphy ML, Hall JD (1981) Varied effects of clear-cut logging on predators and their habitat in small streams of the Cascade Mountains, Oregon. Canadian Journal of Fisheries and Aquatic Sciences, 38, 137 145.
27. Murphy ML, Hawkins CP, Anderson NH (1981) Effects of canopy modification and accumulated sediment on stream communities. Transactions of the American Fisheries Society, 110, 469 478.
28. Newman RA (1992) Adaptive plasticity in amphibian metamorphosis. Bioscience, 42, 671 678.
29. Nussbaum RA (1970) Dicamptodon copei, n. sp., from the Pacific Northwest, U.S.A. (Amphibia: Caudata: Ambystomatidae). Copeia, 1970, 506 514.
30. Nussbaum RA (1976) Geographic Variation and Systematics of Salamanders of the Genus Dicamptodon Strauch (Ambystomatidae). Miscellaneous Publications, Museum of Zoology, University of Michigan, 149, 1 94. Ann Arbor, MI.
31. Peterson MA, Dennao RF (1997) The influence of intraspecific variation in dispersal strategies on the genetic structure of planthopper populations. Evolution, 51, 1189 1206.
32. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure from multilocus genotype data. Genetics, 155, 945 959.
33. Raymond M, Rousset F (1995) GenePop (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248 249.
34. Reaka ML (1980) Geographic range, life-history patterns, and body size in a guild of coral-dwelling mantis shrimps. Evolution, 34, 1019 1030.
35. Rice WR (1989) Analyzing tables of statistical tests. Evolution, 43, 223 255.
36. Roff DA (1992) The Evolution of Life Histories: Theory and Analysis. Chapman & Hall, New York.
37. Rousset F (1996) Equilibrium values of measures of population subdivision for stepwise mutation processes. Genetics, 142, 1357 1362.
38. Shaffer HB (1984) Evolution in a paedomorphic lineage. 1. An electrophoretic analysis of the Mexican ambystomatid salamanders. Evolution, 38, 1194 1206.
39. Slatkin M (1987) Gene flow and the geographic structure of natural populations. Science, 236, 787 792.
40. Stearns SC (1992) The Evolution of Life Histories. Oxford University Press, New York.
41. Steele CA, Baumsteiger J, Storfer A (2008) Polymorphic tetranucleotide microsatellites for Cope's giant salamander (Dicamptodon copei) and Pacific giant salamander (Dicamptodon tenebrosus). Molecular Ecology Resources, 8, 1071 1073.
42. Steele CA, Carstens BC, Storfer A, Sullivan J (2005) Testing hypotheses of speciation timing in Dicamptodon copei and Dicamptodon aterrimus (Caudata: Dicamptodontidae). Molecular Phylogenetics and Evolution, 36, 90 100.
43. Steele CA, Storfer A (2006) Coalescent-based hypothesis testing supports multiple Pleistocene refugia in the Pacific Northwest for the Pacific giant salamander (Dicamptodon tenebrosus). Molecular Ecology, 15, 2477 2487.
44. Steele CA, Storfer A (2007) Phylogeographic incongruence of codistributed amphibian species based on small differences in geographic distribution. Molecular Phylogenetics and Evolution, 43, 468 479.
45. Tihen JA (1958) Comments on the osteology and phylogeny of ambystomatid salamanders. Bulletin of the Florida State Museum, 3, 1 50.
46. Wang J (2004) Sibship reconstruction from genetic data with typing errors. Genetics, 166, 1963 1979.
47. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 1370.
48. Whiteley AR, Spruell P, Allendorf FW (2004) Ecological and life-history characteristics predict population divergence of two salmonids in the same landscape. Molecular Ecology, 13, 3675 3688.