The structure of the USP/RXR of Xenos pecki indicates that Strepsiptera are not closely related to Diptera

Development Genes and Evolution

Volumn 215, Issue 4, 2005, Pages 213-219

  Hayward, D C ^a   Trueman, J W H ^b   Bastiani, M J ^c   Ball, Eldon E ^a  

^a AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^b AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^c UNIVERSITY OF UTAH   (United States)

Author keywords

Ecdysone receptor; RXR; Strepsiptera; Ultraspiracle; Xenos

Indexed keywords

CELL NUCLEUS RECEPTOR; ECDYSONE; ECDYSONE RECEPTOR; RETINOID X RECEPTOR; ULTRASPIRACLE PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTHROPOD; ARTICLE; COLEOPTERA; CONTROLLED STUDY; FLY; INSECT; LEPIDOPTERA; LIGAND BINDING; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; ANIMALS; BAYES THEOREM; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; DIPTERA; EVOLUTION, MOLECULAR; HYMENOPTERA; INSECT PROTEINS; LIGANDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RECEPTORS, STEROID; RETINOID X RECEPTORS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; WASPS;

EID: 17544379731     PISSN: 0949944X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00427-004-0461-x     Document Type: Article

References (28)

1. Billas IM, Moulinier L, Rochel N, Moras D (2001) Crystal structure of the ligand-binding domain of the ultraspiracle protein USP, the ortholog of retinoid X receptors in insects. J Biol Chem 276:7465-7474 10.1074/ jbc.M008926200
2. Bonneton F, Zelus D, Iwema T, Robinson-Rechavi M, Laudet V (2003) Rapid divergence of the ecdysone receptor in Diptera and Lepidoptera suggests coevolution between ECR and USP-RXR. Mol Biol Evol 20:541-553 10.1093/ molbev/msg054
3. Carmean D, Crespi BJ (1995) Do long branches attract flies? Nature 373:666 10.1038/373666b0
4. Chalwatzis N, Baur A, Stetzer E, Kinzelbach R, Zimmermann FK (1995) Strongly expanded 18S rRNA genes correlated with a peculiar morphology in the insect order of Strepsiptera. Zoology 98:115-126
5. Chalwatzis N, Hauf J, van de Peer Y, Kinzelbach R, Zimmermann FK (1996) 18S ribosomal RNA genes of insects: Primary structure of the genes and molecular phylogeny of the Holometabola. Ann Entomol Soc Am 89:788-903
6. Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162:156-159 10.1006/abio.1987.9999
7. Clayton GM, Peak-Chew SY, Evans RM, Schwabe JW (2001) The structure of the ultraspiracle ligand-binding domain reveals a nuclear receptor locked in an inactive conformation. Proc Natl Acad Sci USA 98:1549-1554 10.1073/pnas.041611298
8. Crowson RA (1960) The phylogeny of Coleoptera. Ann Rev Entomol 5:111-134 10.1146/annurev.en.05.010160.000551
9. RA Crowson 1981 The biology of the Coleoptera Academic Press London
10. Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791
11. Hayward DC, Bastiani MJ, Trueman JWH, Truman JW, Riddiford LM, Ball EE (1999) The sequence of Locusta RXR, homologous to Drosophila Ultraspiracle, and its evolutionary implications. Dev Genes Evol 209:564-571 10.1007/s004270050290
12. Huelsenbeck JP, Ronquist F (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755 10.1093/bioinformatics/ 17.8.754
13. Hwang UW, Kim W, Tautz D, Friedrich M (1998) Molecular phylogenetics at the Felsenstein Zone: Approaching the Strepsiptera problem using 5.8S and 28S rDNA sequences. Mol Phylogenet Evol 9:470-480 10.1006/ mpev.1998.0518
14. Kathirithamby J (1989) Review of the order Strepsiptera. Syst Entomol 14:41-92
15. NP Kristensen 1991 Phylogeny of extant hexapods In: ID Naumann PB Carne JF Lawrence ES Nielsen JP Spradberry RW Taylor MJ Whitten MJ Littlejohn (eds) Insects of Australia: A textbook for students and research workers, 2nd edn Melbourne University Press Melbourne 125-140
16. Kristensen NP (1999) Phylogeny of endopterygote insects, the most successful lineage of living organisms. Eur J Entomol 96:237-253
17. J Kukalova-Peck 1991 Fossil history and the evolution of hexapod structures In: ID Naumann PB Carne JF Lawrence ES Nielsen JP Spradberry RW Taylor MJ Whitten MJ Littlejohn (eds) Insects of Australia: A textbook for students and research workers, 2nd edn Melbourne University Press Melbourne 141-179
18. Kukalova-Peck J, Lawrence JF (1993) Evolution of the hind wing in Coleoptera. Can Entomol 125:181-258
19. Posada D, Crandall KA (1998) Modeltest: Testing the model of DNA substitution. Bioinformatics 14:817-818 10.1093/bioinformatics/14.9.817
20. Rokas A, Kathirithamby J, Holland PWH (1999) Intron insertion as a phylogenetic character: The engrailed homeobox of Strepsiptera does not indicate affinity with Diptera. Insect Mol Biol 8:527-530 10.1046/ j.1365-2583.1999.00149.x
21. Rossi P (1793) Observations sur un nouveau genre d'insecte voisin des Ichneumons. Bull Soc Philomathique 1:49
22. J Sambrook DW Russell 2001 Molecular cloning, a laboratory manual Cold Spring Harbor Laboratory Press New York
23. DL Swofford 2002 PAUP*: Phylogenetic analysis using parsimony (and other methods), version 4.0b10 Sinauer Sunderland, Mass.
24. Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680 1:CAS:528:DyaK2MXitlSgu74%3D
25. Whiting MF (1998) Phylogenetic position of the Strepsiptera: Review of molecular and morphological evidence. Int J Insect Morphol Embryol 27:53-60 10.1016/S0020-7322(97)00032-9
26. Whiting MF (2002) Phylogeny of the holometabolous insect orders: molecular evidence. Zool Scripta 31:3-15 10.1046/j.0300-3256.2001.00093.x
27. Whiting MF, Wheeler WC (1994) Insect homeotic transformation. Nature 368:696 10.1038/368696a0
28. Whiting MF, Carpenter JA, Wheeler QD, Wheeler WC (1997) The Strepsiptera problem: Phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology. Syst Biol 46:1-68