Characterization of catabolic meta-nitrophenol nitroreductase from Cupriavidus necator JMP134

Applied Microbiology and Biotechnology

Volumn 87, Issue 6, 2010, Pages 2077-2085

  Yin, Ying ^a   Xiao, Yi ^a   Liu, Hai Zhou ^a   Hao, Fuhua ^b   Rayner, Simon ^a   Tang, Huiru ^b   Zhou, Ning Yi ^a  

^a WUHAN INSTITUTE OF VIROLOGY   (China)

^b Chinese Academy of Sciences   (China)

Author keywords

Catabolism; Cupriavidus necator JMP134; meta Nitrophenol; Nitroreductase

Indexed keywords

FLAVIN MONONUCLEOTIDES; GEL FILTRATION; HIS-TAGGED PROTEINS; IN-SILICO; LIQUID CHROMATOGRAPHY-DIODE ARRAY DETECTION; METABOLIC RECONSTRUCTION; NITROPHENOLS; NITROREDUCTASES; PARTIAL REDUCTION; PHYLOGENETIC ANALYSIS; PHYSIOLOGICAL FUNCTIONS; PHYSIOLOGICAL SUBSTRATE; REAL-TIME PCR; SOLE SOURCE OF CARBON; TIME OF FLIGHT MASS SPECTROMETRY;

GELS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLISM; OXYGEN;

DEGRADATION;

ENZYME; FLAVINE MONONUCLEOTIDE; META HYDROXYLAMINOPHENOL; META NITROPHENOL NITROREDUCTASE; META NITROSOPHENOL; NITROREDUCTASE; OXYGEN; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; UNCLASSIFIED DRUG;

BACTERIUM; BIODEGRADATION; CARBON; CATABOLISM; ENERGY BUDGET; ENZYME ACTIVITY; FILTRATION; GENE EXPRESSION; HOMOGENEITY; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NITROGEN; PHYLOGENETICS; PHYSIOLOGICAL RESPONSE; POLYMERASE CHAIN REACTION; REAL TIME;

ARTICLE; CATABOLISM; CONTROLLED STUDY; CUPRIAVIDUS NECATOR; ENZYME DEGRADATION; GENE; GENETIC TRANSCRIPTION; MNPA GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY;

BACTERIAL PROTEINS; CUPRIAVIDUS NECATOR; KINETICS; MOLECULAR SEQUENCE DATA; NITROPHENOLS; NITROREDUCTASES; PHYLOGENY; SUBSTRATE SPECIFICITY;

CUPRIAVIDUS NECATOR;

EID: 77955552309     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-010-2666-4     Document Type: Article

References (40)

1. AR Becker LA Sternson 1980 Non-enzymatic reduction of nitrosobenzene to phenylhydroxylamine by NAD(P)H Bioorg Chem 9 305 312 10.1016/0045-2068(80)90040- 1 1:CAS:528:DyaL3MXmsVymsA%3D%3D (Pubitemid 11223008)
2. MM Bradford 1976 A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal Biochem 72 248 254 10.1016/0003-2697(76)90527-3 1:CAS:528: DyaE28XksVehtrY%3D
3. C Bruhn H Lenke HJ Knackmuss 1987 Nitrosubstituted aromatic-compounds as nitrogen-source for bacteria Appl Environ Microbiol 53 208 210 1:CAS:528:DyaL2sXotFeqsw%3D%3D
4. CB Do MS Mahabhashyam M Brudno S Batzoglou 2005 ProbCons: probabilistic consistency-based multiple sequence alignment Genome Res 15 330 340 10.1101/gr.2821705 1:CAS:528:DC%2BD2MXhsVKgu7w%3D (Pubitemid 40309398)
5. PE Groenewegen P Breeuwer JM van Helvoort AA Langenhoff FP de Vries JA de Bont 1992 Novel degradative pathway of 4-nitrobenzoate in Comamonas acidovorans NBA-10 J Gen Microbiol 138 1599 1605 1:CAS:528:DyaK38Xls1Ons7Y%3D
6. MA Hughes PA Williams 2001 Cloning and characterization of the pnb genes, encoding enzymes for 4-nitrobenzoate catabolism in Pseudomonas putida TW3 J Bacteriol 183 1225 1232 10.1128/JB.183.4.1225-1232.2001 1:CAS:528: DC%2BD3MXhtVGmsLY%3D (Pubitemid 32107718)
7. H Iwaki T Muraki S Ishihara Y Hasegawa KN Rankin T Sulea J Boyd PCK Lau 2007 Characterization of a pseudomonad 2-nitrobenzoate nitroreductase and its catabolic pathway-associated 2-hydroxylaminobenzoate mutase and a chemoreceptor involved in 2-nitrobenzoate chemotaxis J Bacteriol 189 3502 3514 10.1128/JB.01098-06 1:CAS:528:DC%2BD2sXltVaqsro%3D (Pubitemid 46668815)
8. RK Jain JH Dreisbach JC Spain 1994 Biodegradation of p-nitrophenol via 1, 2, 4-benzenetriol by an Arthrobacter sp Appl Environ Microbiol 60 3030 3032 1:CAS:528:DyaK2cXlt12lsLY%3D
9. W Kitagawa N Kimura Y Kamagata 2004 A novel p-nitrophenol degradation gene cluster from a Gram-positive bacterium, Rhodococcus opacus SAO101 J Bacteriol 186 4894 4902 10.1128/JB.186.15.4894-4902.2004 1:CAS:528: DC%2BD2cXmtFeqsLk%3D (Pubitemid 38970816)
10. AE Kuhm M Schlomann HJ Knackmuss DH Pieper 1990 Purification and characterization of dichloromuconate cycloisomerase from Alcaligenes eutrophus JMP134 Biochem J 266 877 883 1:CAS:528:DyaK3cXitFarsbo%3D
11. V Leskovac J Svircevic S Trivic M Popovic M Radulovic 1989 Reduction of aryl nitroso-compounds by pyridine and flavin coenzymes Int J Biochem 21 825 834 10.1016/0020-711X(89)90279-6 1:CAS:528:DyaK3cXjt1Giug%3D%3D
12. -ΔΔCT method Methods 25 402 408 10.1006/meth.2001.1262 1:CAS:528:DC%2BD38XhtFelt7s%3D (Pubitemid 34164012)
13. TM Louie CM Webster LY Xun 2002 Genetic and biochemical characterization of a 2, 4, 6-trichlorophenol degradation pathway in Ralstonia eutropha JMP134 J Bacteriol 184 3492 3500 10.1128/JB.184.13.3492-3500.2002 1:CAS:528: DC%2BD38XkslyrsLo%3D (Pubitemid 34625657)
14. R Meulenberg M Pepi JA de Bont 1996 Degradation of 3-nitrophenol by Pseudomonas putida B2 occurs via 1, 2, 4-benzenetriol Biodegradation 7 303 311 10.1007/BF00115744 1:CAS:528:DyaK2sXhtFCrsr0%3D
15. T Ooi T Shibata R Sato H Ohno S Kinoshita TL Thuoc S Taguchi 2007 An azoreductase, aerobic NADH-dependent flavoprotein discovered from Bacillus sp.: functional expression and enzymatic characterization Appl Environ Microbiol 75 377 386 1:CAS:528:DC%2BD2sXmsV2iuro%3D
16. HS Park HS Kim 2000 Identification and characterization of the nitrobenzene catabolic plasmids pNB1 and pNB2 in Pseudomonas putida HS12 J Bacteriol 182 573 580 10.1128/JB.182.3.573-580.2000 1:CAS:528: DC%2BD3cXltFCkug%3D%3D (Pubitemid 30053985)
17. D Perez-Pantoja R De la Iglesia DH Pieper B Gonzalez 2008 Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134 FEMS Microbiol Rev 32 736 794 10.1111/j.1574-6976.2008.00122.x 1:CAS:528:DC%2BD1cXhtFeiurnO
18. E Perez-Reinado R Blasco F Castillo C Moreno-Vivian MD Roldan 2005 Regulation and characterization of two nitroreductase genes, nprA and nprB, of Rhodobacter capsulatus Appl Environ Microbiol 71 7643 7649 10.1128/AEM.71.12. 7643-7649.2005 1:CAS:528:DC%2BD2MXhtlehtL3P (Pubitemid 41803884)
19. PR Race AL Lovering RM Green A Ossor SA White PF Searle CJ Wrighton EI Hyde 2005 Structural and mechanistic studies of Escherichia coli nitroreductase with the antibiotic nitrofurazone. Reversed binding orientations in different redox states of the enzyme J Biol Chem 280 13256 13264 10.1074/jbc.M409652200 1:CAS:528:DC%2BD2MXivV2ks7g%3D (Pubitemid 40517209)
20. J Rau A Stolz 2003 Oxygen-insensitive nitroreductases NfsA and NfsB of Escherichia coli function under anaerobic conditions as lawsone-dependent azo reductases Appl Environ Microbiol 69 3448 3455 10.1128/AEM.69.6.3448-3455.2003 1:CAS:528:DC%2BD3sXks1Gltbc%3D
21. PG Rieger HM Meier M Gerle U Vogt T Groth HJ Knackmuss 2002 Xenobiotics in the environment: present and future strategies to obviate the problem of biological persistence J Biotechnol 94 101 123 10.1016/S0168-1656(01)00422-9 1:CAS:528:DC%2BD38XktFSrtQ%3D%3D (Pubitemid 34127671)
22. MD Roldan E Perez-Reinado F Castillo C Moreno-Vivian 2008 Reduction of polynitroaromatic compounds: the bacterial nitroreductases FEMS Microbiol Rev 32 474 500 10.1111/j.1574-6976.2008.00107.x 1:CAS:528:DC%2BD1cXlslCrsr8%3D (Pubitemid 351538747)
23. F Ronquist JP Huelsenbeck 2003 MrBayes 3: Bayesian phylogenetic inference under mixed models Bioinformatics 19 1572 1574 10.1093/bioinformatics/btg180 1:CAS:528:DC%2BD3sXntlKms7k%3D (Pubitemid 37038874)
24. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
25. A Schenzle H Lenke P Fischer PA Williams H Knackmuss 1997 Catabolism of 3-nitrophenol by Ralstonia eutropha JMP134 Appl Environ Microbiol 63 1421 1427 1:CAS:528:DyaK2sXisVWlsLk%3D
26. A Schenzle H Lenke JC Spain HJ Knackmuss 1999 3-Hydroxylaminophenol mutase from Ralstonia eutropha JMP134 catalyzes a Bamberger rearrangement J Bacteriol 181 1444 1450 1:CAS:528:DyaK1MXhslWrtrY%3D
27. A Schenzle H Lenke JC Spain HJ Knackmuss 1999 Chemoselective nitro group reduction and reductive dechlorination initiate degradation of 2-chloro-5-nitrophenol by Ralstonia eutropha JMP134 Appl Environ Microbiol 65 2317 2323 1:CAS:528:DyaK1MXjs12gsrc%3D
28. CC Somerville SF Nishino JC Spain 1995 Purification and characterization of nitrobenzene nitroreductase from Pseudomonas pseudoalcaligenes JS45 J Bacteriol 177 3837 3842 1:CAS:528:DyaK2MXmsFymu74%3D
29. JC Spain O Wyss DT Gibson 1979 Enzymatic oxidation of p-nitrophenol Biochem Biophys Res Commun 88 634 641 10.1016/0006-291X(79)92095-3 1:CAS:528:DyaE1MXkslSks7k%3D (Pubitemid 9178717)
30. K Streker C Freiberg H Labischinski J Hacker K Ohlsen 2005 Staphylococcus aureus NfrA (SA0367) is a flavin mononucleotide-dependent NADPH oxidase involved in oxidative stress response J Bacteriol 187 2249 2256 10.1128/JB.187.7.2249-2256.2005 1:CAS:528:DC%2BD2MXjt1Kru7s%3D (Pubitemid 40389122)
31. KN Timmis DH Pieper 1999 Bacteria designed for bioremediation Trends Biotechnol 17 201 204 10.1016/S0167-7799(98)01295-5 1:CAS:528:DyaK1MXlt1Kjsbs%3D
32. J Whiteway P Koziarz J Veall N Sandhu P Kumar B Hoecher IB Lambert 1998 Oxygen-insensitive nitroreductases: analysis of the roles of nfsA and nfsB in development of resistance to 5-nitrofuran derivatives in Escherichia coli J Bacteriol 180 5529 5539 1:CAS:528:DyaK1cXnt1WqtLo%3D
33. JF Wu CY Jiang BJ Wang YF Ma ZP Liu SJ Liu 2006 Novel partial reductive pathway for 4-chloronitrobenzene and nitrobenzene degradation in Comamonas sp. strain CNB1 Appl Environ Microbiol 72 1759 1765 10.1128/AEM.72.3.1759-1765.2006 1:CAS:528:DC%2BD28XjsFCmsrc%3D
34. Y Xiao JF Wu H Liu SJ Wang SJ Liu NY Zhou 2006 Characterization of genes involved in the initial reactions of 4-chloronitrobenzene degradation in Pseudomonas putida ZWL73 Appl Microbiol Biotechnol 73 166 171 10.1007/s00253-006-0441-3 1:CAS:528:DC%2BD28XhtFSnsLrL (Pubitemid 44627738)
35. Y Xiao JJ Zhang H Liu NY Zhou 2007 Molecular characterization of a novel ortho-nitrophenol catabolic gene cluster in Alcaligenes sp. strain NyZ215 J Bacteriol 189 6587 6593 10.1128/JB.00654-07 1:CAS:528:DC%2BD2sXhtVKlsrnM (Pubitemid 47397364)
36. J Zeyer PC Kearney 1984 Degradation of o-nitrophenol and m-nitrophenol by a Pseudomonas putida J Agric Food Chem 32 238 242 10.1021/jf00122a015 1:CAS:528:DyaL2cXhtVymtLw%3D
37. J Zeyer HP Kocher 1988 Purification and characterization of a bacterial nitrophenol oxygenase which converts ortho-nitrophenol to catechol and nitrite J Bacteriol 170 1789 1794 1:CAS:528:DyaL1cXhvValtrw%3D
38. JJ Zhang H Liu Y Xiao XE Zhang NY Zhou 2009 Identification and characterization of catabolic para-nitrophenol 4-monooxygenase and para-benzoquinone reductase from Pseudomonas sp. strain WBC-3 J Bacteriol 191 2703 2710 10.1128/JB.01566-08 1:CAS:528:DC%2BD1MXltFarsrs%3D
39. D Zhen H Liu SJ Wang JJ Zhang F Zhao NY Zhou 2006 Plasmid-mediated degradation of 4-chloronitrobenzene by newly isolated Pseudomonas putida ZWL73 Appl Microbiol Biotechnol 72 797 803 10.1007/s00253-006-0345-2 1:CAS:528:DC%2BD28XpvF2murc%3D (Pubitemid 44454943)
40. NY Zhou SL Fuenmayor PA Williams 2001 nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism J Bacteriol 183 700 708 10.1128/JB.183.2.700-708.2001 1:CAS:528:DC%2BD3MXktVOqsg%3D%3D (Pubitemid 32048130)