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Volumn 38, Issue 2, 2000, Pages 477-482

Simplified hepatitis C virus genotyping by heteroduplex mobility analysis

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DNA FLANKING REGION; DNA SEQUENCE; GENETIC ANALYSIS; GENETIC VARIABILITY; GENOTYPE; HEPATITIS C VIRUS; HETERODUPLEX ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; VIRUS ISOLATION;

EID: 0033980742     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/jcm.38.2.477-482.2000     Document Type: Article
Times cited : (74)

References (35)
  • 4
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomczynski, P., and N. Sacchi. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:156-159.
    • (1987) Anal. Biochem. , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 5
    • 0024509701 scopus 로고
    • Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome
    • Choo, Q. L., G. Kuo, A. J. Weiner, L. R. Overby, D. W. Bradley, and M. Houghton. 1989. Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome. Science 244:359-362.
    • (1989) Science , vol.244 , pp. 359-362
    • Choo, Q.L.1    Kuo, G.2    Weiner, A.J.3    Overby, L.R.4    Bradley, D.W.5    Houghton, M.6
  • 6
    • 44949279715 scopus 로고
    • Linear amplification sequencing, a powerful method for sequencing DNA
    • Craxton, M. 1991. Linear amplification sequencing, a powerful method for sequencing DNA. Methods Companion Methods Enzymol. 3:20-26.
    • (1991) Methods Companion Methods Enzymol. , vol.3 , pp. 20-26
    • Craxton, M.1
  • 9
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 11
    • 0029842879 scopus 로고    scopus 로고
    • Tracking hepatitis C virus quasispecies major and minor variants in symptomatic and asymptomatic liver transplant recipients
    • Gretch, D. R., S. J. Polyak, J. J. Wilson, R. L. Carithers, Jr., J. D. Perkins, and L. Corey. 1996. Tracking hepatitis C virus quasispecies major and minor variants in symptomatic and asymptomatic liver transplant recipients. J. Virol. 70:7622-7631.
    • (1996) J. Virol. , vol.70 , pp. 7622-7631
    • Gretch, D.R.1    Polyak, S.J.2    Wilson, J.J.3    Carithers R.L., Jr.4    Perkins, J.D.5    Corey, L.6
  • 12
    • 0031945389 scopus 로고    scopus 로고
    • Hepatitis C genotyping by direct sequencing of the product from the Roche AMPLICOR test: Methodology and application to a South Australian population
    • Holland, J., I. Bastian, R. M. Ratcliff, M. Y. Beers, P. Hahesy, H. Harley, D. R. Shaw, and G. D. Higgins. 1998. Hepatitis C genotyping by direct sequencing of the product from the Roche AMPLICOR test: methodology and application to a South Australian population. Pathology 30:192-195.
    • (1998) Pathology , vol.30 , pp. 192-195
    • Holland, J.1    Bastian, I.2    Ratcliff, R.M.3    Beers, M.Y.4    Hahesy, P.5    Harley, H.6    Shaw, D.R.7    Higgins, G.D.8
  • 14
    • 0027194652 scopus 로고
    • One-step RNA polymerase chain reaction for detection of hepatitis C virus RNA
    • Hu, K. Q., C. H. Yu, and J. M. Vierling. 1993. One-step RNA polymerase chain reaction for detection of hepatitis C virus RNA. Hepatology 18:270-274.
    • (1993) Hepatology , vol.18 , pp. 270-274
    • Hu, K.Q.1    Yu, C.H.2    Vierling, J.M.3
  • 17
    • 0024973417 scopus 로고
    • Avoiding false positives with PCR
    • Kwok, S., and R. Higuchi. 1989. Avoiding false positives with PCR. Nature 339:237-238.
    • (1989) Nature , vol.339 , pp. 237-238
    • Kwok, S.1    Higuchi, R.2
  • 20
    • 0027509074 scopus 로고
    • Detection of three types of hepatitis C virus in blood donors: Investigation of type-specific differences in serologic reactivity and rate of alanine aminotransferase abnormalities
    • McOmish, F., S. W. Chan, B. C. Dow, J. Gillon, W. D. Frame, R. J. Crawford, P. L. Yap, E. A. Follett, and P. Simmonds. 1993. Detection of three types of hepatitis C virus in blood donors: investigation of type-specific differences in serologic reactivity and rate of alanine aminotransferase abnormalities. Transfusion 33:7-13.
    • (1993) Transfusion , vol.33 , pp. 7-13
    • McOmish, F.1    Chan, S.W.2    Dow, B.C.3    Gillon, J.4    Frame, W.D.5    Crawford, R.J.6    Yap, P.L.7    Follett, E.A.8    Simmonds, P.9
  • 21
    • 0030998267 scopus 로고    scopus 로고
    • cDNA sequencing of the 5′ noncoding region (5′ NCR) to determine hepatitis C genotypes in patients with chronic hepatitis C
    • O'Brien, C. B., B. S. Henzel, L. Wolfe, K. Gutekunst, and D. Moonka. 1997. cDNA sequencing of the 5′ noncoding region (5′ NCR) to determine hepatitis C genotypes in patients with chronic hepatitis C. Dig. Dis. Sci. 42:1087-1093.
    • (1997) Dig. Dis. Sci. , vol.42 , pp. 1087-1093
    • O'Brien, C.B.1    Henzel, B.S.2    Wolfe, L.3    Gutekunst, K.4    Moonka, D.5
  • 22
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page, R. D. M. 1996. TREEVIEW: an application to display phylogenetic trees on personal computers. Comput. Applic. Biosci. 12:357-358.
    • (1996) Comput. Applic. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 23
    • 0031923838 scopus 로고    scopus 로고
    • Interferon resistance of hepatitis C virus genotype 1b: Relationship to nonstructural 5A gene quasispecies mutations
    • Pawlotsky, J. M., G. Germanidis, A. U. Neumann, M. Pellerin, P. O. Frainais, and D. Dhumeaux. 1998. Interferon resistance of hepatitis C virus genotype 1b: relationship to nonstructural 5A gene quasispecies mutations. J. Virol. 72:2795-2805.
    • (1998) J. Virol. , vol.72 , pp. 2795-2805
    • Pawlotsky, J.M.1    Germanidis, G.2    Neumann, A.U.3    Pellerin, M.4    Frainais, P.O.5    Dhumeaux, D.6
  • 24
    • 0031958419 scopus 로고    scopus 로고
    • Evolution of hepatitis C virus quasispecies in hypervariable region 1 and the putative interferon sensitivity-determining region during interferon therapy and natural infection
    • Polyak, S. J., S. McArdle, S. L. Liu, D. G. Sullivan, M. Chung, W. T. Hofgartner, R. L. Carithers, Jr., B. J. McMahon, J. I. Mullins, L. Corey, and D. R. Gretch. 1998. Evolution of hepatitis C virus quasispecies in hypervariable region 1 and the putative interferon sensitivity-determining region during interferon therapy and natural infection. J. Virol. 72:4288-4296.
    • (1998) J. Virol. , vol.72 , pp. 4288-4296
    • Polyak, S.J.1    McArdle, S.2    Liu, S.L.3    Sullivan, D.G.4    Chung, M.5    Hofgartner, W.T.6    Carithers R.L., Jr.7    McMahon, B.J.8    Mullins, J.I.9    Corey, L.10    Gretch, D.R.11
  • 25
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 27
    • 0029609999 scopus 로고
    • Hepatitis C virus variants and the role of genotyping
    • Smith, D. B., F. Davidson, and P. Simmonds. 1995. Hepatitis C virus variants and the role of genotyping. J. Hepatol. 23:26-31.
    • (1995) J. Hepatol. , vol.23 , pp. 26-31
    • Smith, D.B.1    Davidson, F.2    Simmonds, P.3
  • 28
    • 0029027606 scopus 로고
    • Variation of the hepatitis C virus 5′ non-coding region: Implications for secondary structure, virus detection and typing
    • The International HCV Collaborative Study Group
    • Smith, D. B., J. Mellor, L. M. Jarvis, F. Davidson, J. Kolberg, M. Urdea, P. L. Yap, and P. Simmonds. 1995. Variation of the hepatitis C virus 5′ non-coding region: implications for secondary structure, virus detection and typing. The International HCV Collaborative Study Group. J. Gen. Virol. 76:1749-1761.
    • (1995) J. Gen. Virol. , vol.76 , pp. 1749-1761
    • Smith, D.B.1    Mellor, J.2    Jarvis, L.M.3    Davidson, F.4    Kolberg, J.5    Urdea, M.6    Yap, P.L.7    Simmonds, P.8
  • 30
    • 0031775492 scopus 로고    scopus 로고
    • Multigene tracking of hepatitis C virus quasispecies after liver transplantation - Correlation of genetic diversification in the envelope region with asymptomatic or mild disease patterns
    • Sullivan, D. G., J. J. Wilson, R. L. Carithers, J. D. Perkins, and D. R. Gretch. 1998. Multigene tracking of hepatitis C virus quasispecies after liver transplantation - correlation of genetic diversification in the envelope region with asymptomatic or mild disease patterns. J. Virol. 72:10036-10043.
    • (1998) J. Virol. , vol.72 , pp. 10036-10043
    • Sullivan, D.G.1    Wilson, J.J.2    Carithers, R.L.3    Perkins, J.D.4    Gretch, D.R.5
  • 31
    • 0027968068 scopus 로고
    • Clustal W: Improving the sensitivity of progressive multi sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. Clustal W: improving the sensitivity of progressive multi sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 33
    • 0029038637 scopus 로고
    • Characterization of simple and complex hepatitis C virus quasispecies by heteroduplex gel shift analysis: Correlation with nucleotide sequencing
    • Wilson, J. J., S. J. Polyak, T. D. Day, and D. R. Gretch. 1995. Characterization of simple and complex hepatitis C virus quasispecies by heteroduplex gel shift analysis: correlation with nucleotide sequencing. J. Gen. Virol. 76:1763-1771.
    • (1995) J. Gen. Virol. , vol.76 , pp. 1763-1771
    • Wilson, J.J.1    Polyak, S.J.2    Day, T.D.3    Gretch, D.R.4
  • 34
    • 0027512013 scopus 로고
    • Detection of hepatitis C virus RNA by a combined reverse transcription-polymerase chain reaction assay
    • Young, K. K., R. M. Resnick, and T. W. Myers. 1993. Detection of hepatitis C virus RNA by a combined reverse transcription-polymerase chain reaction assay. J. Clin. Microbiol. 31:882-886.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 882-886
    • Young, K.K.1    Resnick, R.M.2    Myers, T.W.3
  • 35
    • 0031968702 scopus 로고    scopus 로고
    • Identification of new influenza B virus variants by multiplex reverse transcription-PCR and the heteroduplex mobility assay
    • Zou, S., C. Stansfield, and J. Bridge. 1998. Identification of new influenza B virus variants by multiplex reverse transcription-PCR and the heteroduplex mobility assay. J. Clin. Microbiol. 36:1544-1548.
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 1544-1548
    • Zou, S.1    Stansfield, C.2    Bridge, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.