-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0031984231
-
Hepatitis C virus heteroduplex tracking assay for genotype determination reveals diverging genotype 2 isolates in Italian hemodialysis patients
-
Calvo, P. L., J. Kansopon, K. Sra, S. Quan, R. DiNello, R. Guaschino, G. Calabrese, F. Danielle, M. R. Brunetto, F. Bonino, A. L. Massaro, A. Polito, M. Houghton, and A. J. Weiner. 1998. Hepatitis C virus heteroduplex tracking assay for genotype determination reveals diverging genotype 2 isolates in Italian hemodialysis patients. J. Clin. Microbiol. 36:227-233.
-
(1998)
J. Clin. Microbiol.
, vol.36
, pp. 227-233
-
-
Calvo, P.L.1
Kansopon, J.2
Sra, K.3
Quan, S.4
DiNello, R.5
Guaschino, R.6
Calabrese, G.7
Danielle, F.8
Brunetto, M.R.9
Bonino, F.10
Massaro, A.L.11
Polito, A.12
Houghton, M.13
Weiner, A.J.14
-
3
-
-
0027403340
-
Genotypic subtyping of hepatitis C virus
-
Chayama, K., A. Tsubota, Y. Arase, S. Saitoh, I. Koida, K. Ikeda, T. Matsumoto, M. Kobayashi, S. Iwasaki, S. Koyama, et al. 1993. Genotypic subtyping of hepatitis C virus. J. Gastroenterol. Hepatol. 8:150-156.
-
(1993)
J. Gastroenterol. Hepatol.
, vol.8
, pp. 150-156
-
-
Chayama, K.1
Tsubota, A.2
Arase, Y.3
Saitoh, S.4
Koida, I.5
Ikeda, K.6
Matsumoto, T.7
Kobayashi, M.8
Iwasaki, S.9
Koyama, S.10
-
4
-
-
0023277545
-
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
-
Chomczynski, P., and N. Sacchi. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:156-159.
-
(1987)
Anal. Biochem.
, vol.162
, pp. 156-159
-
-
Chomczynski, P.1
Sacchi, N.2
-
5
-
-
0024509701
-
Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome
-
Choo, Q. L., G. Kuo, A. J. Weiner, L. R. Overby, D. W. Bradley, and M. Houghton. 1989. Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome. Science 244:359-362.
-
(1989)
Science
, vol.244
, pp. 359-362
-
-
Choo, Q.L.1
Kuo, G.2
Weiner, A.J.3
Overby, L.R.4
Bradley, D.W.5
Houghton, M.6
-
6
-
-
44949279715
-
Linear amplification sequencing, a powerful method for sequencing DNA
-
Craxton, M. 1991. Linear amplification sequencing, a powerful method for sequencing DNA. Methods Companion Methods Enzymol. 3:20-26.
-
(1991)
Methods Companion Methods Enzymol.
, vol.3
, pp. 20-26
-
-
Craxton, M.1
-
7
-
-
0029000103
-
Survey of major genotypes and subtypes of hepatitis C virus using RFLP of sequences amplified from the 5′ non-coding region
-
Davidson, F., P. Simmonds, J. C. Ferguson, L. M. Jarvis, B. C. Dow, E. A. Follett, C. R. Seed, T. Krusius, C. Lin, G. A. Medgyesi, et al. 1995. Survey of major genotypes and subtypes of hepatitis C virus using RFLP of sequences amplified from the 5′ non-coding region. J. Gen. Virol. 76:1197-1204.
-
(1995)
J. Gen. Virol.
, vol.76
, pp. 1197-1204
-
-
Davidson, F.1
Simmonds, P.2
Ferguson, J.C.3
Jarvis, L.M.4
Dow, B.C.5
Follett, E.A.6
Seed, C.R.7
Krusius, T.8
Lin, C.9
Medgyesi, G.A.10
-
8
-
-
0027690383
-
Genetic relationships determined by a DNA heteroduplex mobility assay: Analysis of HIV-1 env genes
-
Delwart, E. L., E. G. Shpaer, J. Louwagie, F. E. McCutchan, M. Grez, H. Rubsamen-Waigmann, and J. I. Mullins. 1993. Genetic relationships determined by a DNA heteroduplex mobility assay: analysis of HIV-1 env genes. Science 262:1257-1261.
-
(1993)
Science
, vol.262
, pp. 1257-1261
-
-
Delwart, E.L.1
Shpaer, E.G.2
Louwagie, J.3
McCutchan, F.E.4
Grez, M.5
Rubsamen-Waigmann, H.6
Mullins, J.I.7
-
9
-
-
0021760092
-
A comprehensive set of sequence analysis programs for the VAX
-
Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 387-395
-
-
Devereux, J.1
Haeberli, P.2
Smithies, O.3
-
11
-
-
0029842879
-
Tracking hepatitis C virus quasispecies major and minor variants in symptomatic and asymptomatic liver transplant recipients
-
Gretch, D. R., S. J. Polyak, J. J. Wilson, R. L. Carithers, Jr., J. D. Perkins, and L. Corey. 1996. Tracking hepatitis C virus quasispecies major and minor variants in symptomatic and asymptomatic liver transplant recipients. J. Virol. 70:7622-7631.
-
(1996)
J. Virol.
, vol.70
, pp. 7622-7631
-
-
Gretch, D.R.1
Polyak, S.J.2
Wilson, J.J.3
Carithers R.L., Jr.4
Perkins, J.D.5
Corey, L.6
-
12
-
-
0031945389
-
Hepatitis C genotyping by direct sequencing of the product from the Roche AMPLICOR test: Methodology and application to a South Australian population
-
Holland, J., I. Bastian, R. M. Ratcliff, M. Y. Beers, P. Hahesy, H. Harley, D. R. Shaw, and G. D. Higgins. 1998. Hepatitis C genotyping by direct sequencing of the product from the Roche AMPLICOR test: methodology and application to a South Australian population. Pathology 30:192-195.
-
(1998)
Pathology
, vol.30
, pp. 192-195
-
-
Holland, J.1
Bastian, I.2
Ratcliff, R.M.3
Beers, M.Y.4
Hahesy, P.5
Harley, H.6
Shaw, D.R.7
Higgins, G.D.8
-
13
-
-
0029821097
-
Genotyping hepatitis C virus isolates from Spain, Brazil, China, and Macau by a simplified PCR method
-
Holland, P. V., J. M. Barrera, M. G. Ercilla, C. F. T. Yoshida, Y. Wang, G. A. B. Deolim, B. Betlach, K. Kuramoto, and H. Okamoto. 1996. Genotyping hepatitis C virus isolates from Spain, Brazil, China, and Macau by a simplified PCR method. J. Clin. Microbiol. 34:2372-2378.
-
(1996)
J. Clin. Microbiol.
, vol.34
, pp. 2372-2378
-
-
Holland, P.V.1
Barrera, J.M.2
Ercilla, M.G.3
Yoshida, C.F.T.4
Wang, Y.5
Deolim, G.A.B.6
Betlach, B.7
Kuramoto, K.8
Okamoto, H.9
-
14
-
-
0027194652
-
One-step RNA polymerase chain reaction for detection of hepatitis C virus RNA
-
Hu, K. Q., C. H. Yu, and J. M. Vierling. 1993. One-step RNA polymerase chain reaction for detection of hepatitis C virus RNA. Hepatology 18:270-274.
-
(1993)
Hepatology
, vol.18
, pp. 270-274
-
-
Hu, K.Q.1
Yu, C.H.2
Vierling, J.M.3
-
15
-
-
0032033385
-
Amplification and detection of the terminal 3′ non-coding region of hepatitis C virus isolates
-
Khorsi, H., T. Salabi, S. Castelain, O. Jaillon, P. Zawadzki, J. P. Capron, F. Eb, C. Wychowski, and G. Duverlie. 1998. Amplification and detection of the terminal 3′ non-coding region of hepatitis C virus isolates. Res. Virol. 149: 115-121.
-
(1998)
Res. Virol.
, vol.149
, pp. 115-121
-
-
Khorsi, H.1
Salabi, T.2
Castelain, S.3
Jaillon, O.4
Zawadzki, P.5
Capron, J.P.6
Eb, F.7
Wychowski, C.8
Duverlie, G.9
-
16
-
-
0024511734
-
An assay for circulating antibodies to a major etiologic virus of human non-A, non-B hepatitis
-
Kuo, G., Q. L. Choo, H. J. Alter, G. L. Gitnick, A. G. Redeker, R. H. Purcell, T. Miyamura, J. L. Dienstag, M. J. Alter, C. E. Stevens, et al. 1989. An assay for circulating antibodies to a major etiologic virus of human non-A, non-B hepatitis. Science 244:362-364.
-
(1989)
Science
, vol.244
, pp. 362-364
-
-
Kuo, G.1
Choo, Q.L.2
Alter, H.J.3
Gitnick, G.L.4
Redeker, A.G.5
Purcell, R.H.6
Miyamura, T.7
Dienstag, J.L.8
Alter, M.J.9
Stevens, C.E.10
-
17
-
-
0024973417
-
Avoiding false positives with PCR
-
Kwok, S., and R. Higuchi. 1989. Avoiding false positives with PCR. Nature 339:237-238.
-
(1989)
Nature
, vol.339
, pp. 237-238
-
-
Kwok, S.1
Higuchi, R.2
-
18
-
-
0028869799
-
Application of six hepatitis C virus genotyping systems to sera from chronic hepatitis C patients in the United States
-
Lau, J. Y., M. Mizokami, J. A. Kolberg, G. L. Davis, L. E. Prescott, T. Ohno, R. P. Perrillo, K. L. Lindsay, R. G. Gish, K, P. Qian, et al. 1995. Application of six hepatitis C virus genotyping systems to sera from chronic hepatitis C patients in the United States. J. Infect. Dis. 171:281-289.
-
(1995)
J. Infect. Dis.
, vol.171
, pp. 281-289
-
-
Lau, J.Y.1
Mizokami, M.2
Kolberg, J.A.3
Davis, G.L.4
Prescott, L.E.5
Ohno, T.6
Perrillo, R.P.7
Lindsay, K.L.8
Gish, R.G.9
Qian, K.P.10
-
19
-
-
0031225710
-
Hepatitis C virus genotypes in Australia
-
McCaw, R., L. Moaven, S. A. Locarnini, and D. S. Bowden. 1997. Hepatitis C virus genotypes in Australia. J. Viral Hepatitis 4:351-357.
-
(1997)
J. Viral Hepatitis
, vol.4
, pp. 351-357
-
-
McCaw, R.1
Moaven, L.2
Locarnini, S.A.3
Bowden, D.S.4
-
20
-
-
0027509074
-
Detection of three types of hepatitis C virus in blood donors: Investigation of type-specific differences in serologic reactivity and rate of alanine aminotransferase abnormalities
-
McOmish, F., S. W. Chan, B. C. Dow, J. Gillon, W. D. Frame, R. J. Crawford, P. L. Yap, E. A. Follett, and P. Simmonds. 1993. Detection of three types of hepatitis C virus in blood donors: investigation of type-specific differences in serologic reactivity and rate of alanine aminotransferase abnormalities. Transfusion 33:7-13.
-
(1993)
Transfusion
, vol.33
, pp. 7-13
-
-
McOmish, F.1
Chan, S.W.2
Dow, B.C.3
Gillon, J.4
Frame, W.D.5
Crawford, R.J.6
Yap, P.L.7
Follett, E.A.8
Simmonds, P.9
-
21
-
-
0030998267
-
cDNA sequencing of the 5′ noncoding region (5′ NCR) to determine hepatitis C genotypes in patients with chronic hepatitis C
-
O'Brien, C. B., B. S. Henzel, L. Wolfe, K. Gutekunst, and D. Moonka. 1997. cDNA sequencing of the 5′ noncoding region (5′ NCR) to determine hepatitis C genotypes in patients with chronic hepatitis C. Dig. Dis. Sci. 42:1087-1093.
-
(1997)
Dig. Dis. Sci.
, vol.42
, pp. 1087-1093
-
-
O'Brien, C.B.1
Henzel, B.S.2
Wolfe, L.3
Gutekunst, K.4
Moonka, D.5
-
22
-
-
0030203863
-
TREEVIEW: An application to display phylogenetic trees on personal computers
-
Page, R. D. M. 1996. TREEVIEW: an application to display phylogenetic trees on personal computers. Comput. Applic. Biosci. 12:357-358.
-
(1996)
Comput. Applic. Biosci.
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
-
23
-
-
0031923838
-
Interferon resistance of hepatitis C virus genotype 1b: Relationship to nonstructural 5A gene quasispecies mutations
-
Pawlotsky, J. M., G. Germanidis, A. U. Neumann, M. Pellerin, P. O. Frainais, and D. Dhumeaux. 1998. Interferon resistance of hepatitis C virus genotype 1b: relationship to nonstructural 5A gene quasispecies mutations. J. Virol. 72:2795-2805.
-
(1998)
J. Virol.
, vol.72
, pp. 2795-2805
-
-
Pawlotsky, J.M.1
Germanidis, G.2
Neumann, A.U.3
Pellerin, M.4
Frainais, P.O.5
Dhumeaux, D.6
-
24
-
-
0031958419
-
Evolution of hepatitis C virus quasispecies in hypervariable region 1 and the putative interferon sensitivity-determining region during interferon therapy and natural infection
-
Polyak, S. J., S. McArdle, S. L. Liu, D. G. Sullivan, M. Chung, W. T. Hofgartner, R. L. Carithers, Jr., B. J. McMahon, J. I. Mullins, L. Corey, and D. R. Gretch. 1998. Evolution of hepatitis C virus quasispecies in hypervariable region 1 and the putative interferon sensitivity-determining region during interferon therapy and natural infection. J. Virol. 72:4288-4296.
-
(1998)
J. Virol.
, vol.72
, pp. 4288-4296
-
-
Polyak, S.J.1
McArdle, S.2
Liu, S.L.3
Sullivan, D.G.4
Chung, M.5
Hofgartner, W.T.6
Carithers R.L., Jr.7
McMahon, B.J.8
Mullins, J.I.9
Corey, L.10
Gretch, D.R.11
-
25
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
26
-
-
0027522145
-
Classification of hepatitis-C virus into 6 major genotypes and a series of subtypes by phylogenetic analysis of the NS5 region
-
Simmonds, P., E. C. Holmes, T. A. Cha, S. W. Chan, F. McOmish, B. Irvine, E. Beall, P. L. Yap, J. Kolberg, and M. S. Urdea. 1993. Classification of hepatitis-C virus into 6 major genotypes and a series of subtypes by phylogenetic analysis of the NS5 region. J. Gen. Virol. 74:2391-2399.
-
(1993)
J. Gen. Virol.
, vol.74
, pp. 2391-2399
-
-
Simmonds, P.1
Holmes, E.C.2
Cha, T.A.3
Chan, S.W.4
McOmish, F.5
Irvine, B.6
Beall, E.7
Yap, P.L.8
Kolberg, J.9
Urdea, M.S.10
-
27
-
-
0029609999
-
Hepatitis C virus variants and the role of genotyping
-
Smith, D. B., F. Davidson, and P. Simmonds. 1995. Hepatitis C virus variants and the role of genotyping. J. Hepatol. 23:26-31.
-
(1995)
J. Hepatol.
, vol.23
, pp. 26-31
-
-
Smith, D.B.1
Davidson, F.2
Simmonds, P.3
-
28
-
-
0029027606
-
Variation of the hepatitis C virus 5′ non-coding region: Implications for secondary structure, virus detection and typing
-
The International HCV Collaborative Study Group
-
Smith, D. B., J. Mellor, L. M. Jarvis, F. Davidson, J. Kolberg, M. Urdea, P. L. Yap, and P. Simmonds. 1995. Variation of the hepatitis C virus 5′ non-coding region: implications for secondary structure, virus detection and typing. The International HCV Collaborative Study Group. J. Gen. Virol. 76:1749-1761.
-
(1995)
J. Gen. Virol.
, vol.76
, pp. 1749-1761
-
-
Smith, D.B.1
Mellor, J.2
Jarvis, L.M.3
Davidson, F.4
Kolberg, J.5
Urdea, M.6
Yap, P.L.7
Simmonds, P.8
-
29
-
-
0029761711
-
Second-generation line probe assay for hepatitis C virus genotyping
-
Stuyver, L., A. Wyseur, W. van Arnhem, F. Hernandez, and G. Maertens. 1996. Second-generation line probe assay for hepatitis C virus genotyping. J. Clin. Microbiol. 34:2259-2266.
-
(1996)
J. Clin. Microbiol.
, vol.34
, pp. 2259-2266
-
-
Stuyver, L.1
Wyseur, A.2
Van Arnhem, W.3
Hernandez, F.4
Maertens, G.5
-
30
-
-
0031775492
-
Multigene tracking of hepatitis C virus quasispecies after liver transplantation - Correlation of genetic diversification in the envelope region with asymptomatic or mild disease patterns
-
Sullivan, D. G., J. J. Wilson, R. L. Carithers, J. D. Perkins, and D. R. Gretch. 1998. Multigene tracking of hepatitis C virus quasispecies after liver transplantation - correlation of genetic diversification in the envelope region with asymptomatic or mild disease patterns. J. Virol. 72:10036-10043.
-
(1998)
J. Virol.
, vol.72
, pp. 10036-10043
-
-
Sullivan, D.G.1
Wilson, J.J.2
Carithers, R.L.3
Perkins, J.D.4
Gretch, D.R.5
-
31
-
-
0027968068
-
Clustal W: Improving the sensitivity of progressive multi sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. Clustal W: improving the sensitivity of progressive multi sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
32
-
-
0028167889
-
Typing of hepatitis C virus isolates by DNA enzyme immunoassay
-
Viazov, S., A. Zibert, K. Ramakrishnan, A. Widell, A. Cavicchini, E. Schreier, and M. Roggendorf. 1994. Typing of hepatitis C virus isolates by DNA enzyme immunoassay. J. Virol. Methods 48:81-91.
-
(1994)
J. Virol. Methods
, vol.48
, pp. 81-91
-
-
Viazov, S.1
Zibert, A.2
Ramakrishnan, K.3
Widell, A.4
Cavicchini, A.5
Schreier, E.6
Roggendorf, M.7
-
33
-
-
0029038637
-
Characterization of simple and complex hepatitis C virus quasispecies by heteroduplex gel shift analysis: Correlation with nucleotide sequencing
-
Wilson, J. J., S. J. Polyak, T. D. Day, and D. R. Gretch. 1995. Characterization of simple and complex hepatitis C virus quasispecies by heteroduplex gel shift analysis: correlation with nucleotide sequencing. J. Gen. Virol. 76:1763-1771.
-
(1995)
J. Gen. Virol.
, vol.76
, pp. 1763-1771
-
-
Wilson, J.J.1
Polyak, S.J.2
Day, T.D.3
Gretch, D.R.4
-
34
-
-
0027512013
-
Detection of hepatitis C virus RNA by a combined reverse transcription-polymerase chain reaction assay
-
Young, K. K., R. M. Resnick, and T. W. Myers. 1993. Detection of hepatitis C virus RNA by a combined reverse transcription-polymerase chain reaction assay. J. Clin. Microbiol. 31:882-886.
-
(1993)
J. Clin. Microbiol.
, vol.31
, pp. 882-886
-
-
Young, K.K.1
Resnick, R.M.2
Myers, T.W.3
-
35
-
-
0031968702
-
Identification of new influenza B virus variants by multiplex reverse transcription-PCR and the heteroduplex mobility assay
-
Zou, S., C. Stansfield, and J. Bridge. 1998. Identification of new influenza B virus variants by multiplex reverse transcription-PCR and the heteroduplex mobility assay. J. Clin. Microbiol. 36:1544-1548.
-
(1998)
J. Clin. Microbiol.
, vol.36
, pp. 1544-1548
-
-
Zou, S.1
Stansfield, C.2
Bridge, J.3
|