Molecular and microscopical investigation of the microflora inhabiting a deteriorated Italian manuscript dated from the thirteenth century

Microbial Ecology

Volumn 60, Issue 1, 2010, Pages 69-80

  Michaelsen, Astrid ^a   Piñar, Guadalupe ^b   Pinzari, Flavia ^c,d  

^a UNIVERSITY OF VIENNA   (Austria)

^b UNIVERSITY OF AGRICULTURAL SCIENCES   (Austria)

^c Laboratorio di Biologia   (Italy)

^d SAPIENZA UNIVERSITY OF ROME   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FUNGAL DNA;

ARTICLE; BACTERIUM; BIODIVERSITY; DNA SEQUENCE; FUNGUS; FUNGUS SPORE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PUBLICATION; BACTERIA;

BACTERIA; BIODIVERSITY; DNA, BACTERIAL; DNA, FUNGAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENVIRONMENTAL MICROBIOLOGY; FUNGI; MANUSCRIPTS AS TOPIC; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SPORES, FUNGAL;

BACTERIA (MICROORGANISMS); FUNGI;

EID: 77955430075     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-010-9667-9     Document Type: Article

References (58)

1. Abrusci C, Martín-González A, Del Amo A, Catalina F, Platas G (2005) Isolation and identification of bacteria and fungi from cinematographic films. Int Biodeterior Biodegrad 56: 58-68.
2. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman JD (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res 25: 3389-3402.
3. Boisset C, Fraschini C, Schülein M, Henrissat B, Chanzy H (2000) Imaging the Enzymatic digestion of bacterial cellulose ribbons reveals the endo character of the cellobiohydrolase Cel6A from humicola insolens and its mode of synergy with cellobiohydrolase Cel7A. Appl Environ Microbiol 66: 1444-1452.
4. Brown JA, Collin SA, Wood TM (1987) Enhanced enzyme production by the cellulolytic fungus Penicillium pinophilum, mutant strain NTGIII/6. Enzyme Microb Technol 9: 176-180.
5. Buchan A, Newell SY, Moreta JIL, Moran MA (2002) Analysis of internal transcribed spacer regions of rRNA genes in fungal communities in a south eastern US salt marsh. Microb Ecol 43: 329-340.
6. Cailliez C, Benoit L, Thirion JP, Petitdemange H, Raval G (1992) Characterization of 10 mesophilic cellulolytic Clostridia isolated from a municipal solid waste digestor. Curr Microbial 25: 105-112.
7. Carrarini R, Casetti Brach C (2006) Libri & Carte Restauri e analisi diagnostiche a cura di Quaderni 1, Istituto Centrale di Patologia del Libro, Gangemi editore, Roma, pp 35-38.
8. Chandra R, Singh S, Krishna Reddy MM, Patel DK, Purohit HJ, Kapley A (2008) Isolation and characterization of bacterial strains Paenibacillus sp. and Bacillus sp. for kraft lignin decolorization from pulp paper mill waste. J Gen Appl Microbiol 54: 399-407.
9. Cooke WB (1959) An ecological life history of Aureobasidium pullulans (de Barry) Arnaud. Mycopathologia et Mycologia Applicata pp 1-45.
10. Cummings SP, Stewart CS (1994) Newspaper as a substrate for cellulolytic bacteria. J Appl Bacteriol 76: 196-202.
11. De Paolis MR, Lippi D (2008) Use of metabolic and molecular methods for the identification of a Bacillus strain isolated from paper affected by foxing. Microbiol Res 163: 121-131.
12. Domsch KH, Gams W, Anderson T-H (1980) Compendium of soil fungi. Academic, New York.
13. Emtiazi G, Naghavi N, Bordbar A (2001) Biodegradation of lignocellulosic waste by Aspergillus terreus. Biodegradation 12(4): 259-263.
14. Gallo F (1985) Biological factors in the deterioration of books, Technical Notes. ICCROM, Rome.
15. Gallo F, Pasquariello G (1989) Foxing, ipotesi sull'origine biologica. Boll Ist Centr Pat Libro 43: 136-176.
16. Gaudin C, Belaich A, Champ S, Belaich JP (2000) CelE, a multidomain cellulase from clostridium cellulolyticum: a key enzyme in the cellulosome? J Bacteriol 182: 1910-1915.
17. Gopinath Subash CB, Periasamy A, Azariah H (2005) Extracellular enzymatic activity profiles in fungi isolated from oil-rich environments. Mycoscience 46(2): 119-126.
18. Jakobi M, Winkelmann G (1996) Maltophilin: a new antifungal compound produced by Stenotrophomonas maltophilia R3089. J Antibiot 49: 1101-1104.
19. Justè A, Lievens B, Frans I, Klingeberg M, Michiels CW, Willems KA (2008) Present knowledge of the bacterial microflora in the extreme environment of sugar thick juice. Food Microbiol 25: 831-836.
20. Justè A, Lievens B, Klingeberg M, Michiels CW, Marsh TL, Willems KA (2008) Predominance of Tetragenococcus halophilus as the cause of sugar thick juice degradation. Food Microbiol 25: 413-421.
21. Kobayashi DY, Reedy RM, Bick JA, Oudemans PV (2002) Characterization of a chitinase gene from Stenotrophomonas maltophilia strain 34S1 and its involvement in biological control. Appl Environ Microbiol 68: 1047-1054.
22. König H, Fröhlich J, Hertel H (2005) Diversity and lignocellulolytic activities of cultured microorganisms. In: König H, Varma A (eds) Intestinal microorganisms of termites and other invertebrates. Springer, Heidelberg, pp 272-302.
23. König H (2006) Bacillus species in the intestine of termites and other soil invertebrates. J Appl Microbiol 101: 620-627.
24. Kowalik R (1980) Microbiodeterioration of library materials. Part 2. Microbiodecomposition of basic organic library materials. Restaurator 4: 135-219.
25. Lippi D, Osmi M, Passeti L, De Paolis MR (1995) First observations on bacterial strains isolated from papers affected by foxing. In: Proceedings of the First International Congress Science and Technology for the Safeguard of Cultural Heritage in the Mediterranean Basin, Catania, Italy, pp. 1287-1290.
26. Lord NS, Kaplan CW, Shank P, Kitts CL, Elrod SL (2002) Assessment of fungal diversity using terminal restriction fragment pattern analysis: comparison of 18S and ITS ribosomal regions. FEMS Microbiol Ecol 42: 327-337.
27. Lugauskas A, Levinskaitė L, Peciulytė D (2003) Micromycetes as deterioration agents of polymeric materials. Int Biodeterior Biodegrad 52(4): 233-242.
28. Michaelsen A, Pinzari F, Ripka K, Lubitz K, Piñar G (2006) Application of molecular techniques for the identification of fungal communities colonising paper material. Int Biodeterior Biodegrad 58: 133-141.
29. Mikola J, Bardgett RD, Hedlund K (2002) Biodiversity, ecosystem functioning and soil decomposer food webs. In: Loreau M, Naeem S, Inchausti P (eds) Biodiversity and ecosystem functioning. Synthesis and perspectives. Oxford University Press, Oxford, pp 169-180.
30. Montemartini Corte A, Ferroni A, Salvo VS (2003) Isolation of fungal species from test samples and maps damaged by foxing, and correlation between these species and the environment. Int Biodeterior Biodegrad 51: 167-173.
31. Muyzer G, De Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
32. Muyzer G, Ramsing NB (1995) Molecular Methods to study the organization of microbial communities. Water Science Technologies 32: 1-9.
33. Neefs JM, van de Peer Y, Hendriks L, De Wachter R (1990) Compilation of small ribosomal subunit RNA sequences. Nucl Acids Res 18: 2237-2317.
34. Nielsen KF, Holm G, Uttrup LP, Nielsen PA (2004) Mould growth on building materials under low water activities. Influence of humidity and temperature on fungal growth and secondary metabolism. Int Biodeterior Biodegrad 54: 325-336.
35. Yu NP (1994) The biodeterioration of papers and books. In: Garg KL, Garg N, Mukerji KG (eds) Recent advances in biodeterioration and biodegradation, vol 1. Naya Prokash, Calcutta, pp 1-88.
36. Oppong D, King VM, Bowen JA (2003) Isolation and characterization of filamentous bacteria from paper mill slimes. Int Biodeterior Biodegrad 52: 53-62.
37. Pangallo D, Šimonovičová A, Chovanová K, Ferianc P (2007) Wooden art objects and the museum environment: identification and biodegradative characteristics of isolated microflora. Lett Appl Microbiol 45: 87-94.
38. Pourcher A-M, Sutra L, Hébé I, Moguedet G, Bollet C, Simoneau P, Gardan L (2001) Enumeration and characterization of cellulolytic bacteria from refuse of a landfill. FEMS Microbiol Ecol 34: 229-241.
39. Pushalkar S, Rao KK (1995) Production of b-glucosidase by Aspergillus terreus. Current Microbiology 30: 255-258.
40. Roberts JC (1996) Neutral and alkaline sizing. In: Roberts JC (ed) Paper Chemistry, 2nd edn. Blacklie A& P, Glasgow, pp 140-159.
41. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor.
42. Samson RA, Hoekstra ES, Frisvad JC, Filtenborg O (eds) (2002) Introduction to food- and airborne fungi, 6th edn. Centraalbureau Voor Schimmelculture, Utrecht.
43. Samson RA, Lustgraaf B (1978) Aspergillus penicilloides and Eurotium halophilicum in association with house-dust mites. Mycopathologia 64(1): 13-16.
44. Schabereiter-Gurtner C, Pinar G, Lubitz W, Rolleke S (2001) An advanced molecular strategy to identify bacterial communities on art objects. J Microbiol Methods 45: 77-87.
45. Sterflinger K, Prillinger H (2001) Molecular taxonomy and biodiversity of rock fungal communities in an urban environment (Vienna, Austria). Antonie van Leeuwenhoek 80: 275-286.
46. Suihko ML, Sinkko H, Partanen L, Mattila-Sandholm T, Salkinoja-Salonen M, Raaska L (2004) Description of heterotrophic bacteria occurring in paper mills and paper products. J Appl Microbiol 97: 1228-1235.
47. Suihko ML, Stackebrandt E (2003) Identification of aerobic mesophilic bacilli isolated from board and paper products containing recycled fibres. J Appl Microbiol 94: 25-34.
48. Tamura M, Kawasaki H, Sugiyama J (1999) Identity of the xerophilic species Aspergillus penicillioides: Integrated analysis of the genotypic and phenotypic characters. J Gen Appl Microbiol 45: 29-37.
49. Teske A, Wawer C, Muyzer G, Ramsing NB (1996) Distribution of sulphate-reducing bacteria in a stratified fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and DGGE of PCR-amplified ribosomal DNA fragments. Appl Environ Microbiol 62: 1405-1415.
50. Tilman D, Lehman C (2001) Biodiversity, composition, and ecosystem processes: theory and concepts. In: Kinzig AP, Pacala SW, Tilman D (eds) The functional consequences of biodiversity. Princeton University Press, Princeton, pp 9-41.
51. Vaisänen OM, Weber A, Bennasar A, Rainey FA, Busse HJ, Salkinoja-Salonen MS (1998) Microbial communities of printing paper machines. J Appl Microbiol 84: 1069-1084.
52. Wardle DA (1999) Is sampling effect a problem for experiments investigating biodiversity-ecosystem function relationships? Oikos 87: 403-407.
53. Wardle DA (2002) Communities and ecosystems: linking the aboveground and belowground components. Princeton University Press, Princeton.
54. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications. Academic, New York, pp 315-322.
55. Wu Z, Tsumura Y, Blomquist G, Wang X-R (2003) 18S rRNA gene variation among common airborne fungi, and development of specific oligonucleotide probes for the detection of fungal isolates. Appl Environ Microbiol 69: 5389-5397.
56. Zhang Z, Yuen GY (2000) The role of chitinase production by Stenotrophomonas maltophilia strain C3 in biological control of Bipolaris sorokiniana. Phytopatology 90: 384-389.
57. Zotti M, Ferroni A (2008) Microfungal biodeterioration of historic paper: Preliminary FTIR and microbiological analyses. Int Biodeterior Biodegrad 62(2): 186-194.
58. Zyska B (1997) Fungi isolated from library materials: a review of the literature. Int Biodeterior Biodegrad 40: 43-51.