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Volumn 156, Issue 8, 2010, Pages 2506-2515

Outer membrane pore protein prediction in mycobacteria using genomic comparison

Author keywords

[No Author keywords available]

Indexed keywords

OUTER MEMBRANE PROTEIN; BACTERIAL DNA; PORIN;

EID: 77955411450     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.040089-0     Document Type: Article
Times cited : (23)

References (42)
  • 1
    • 0032696091 scopus 로고    scopus 로고
    • Cloning, expression and immunological reactivity of two mammalian cell entry proteins encoded by the mce1 operon of Mycobacterium tuberculosis
    • Ahmad, S., Akbar, P. K., Wiker, H. G., Harboe, M. & Mustafa, A. S. (1999). Cloning, expression and immunological reactivity of two mammalian cell entry proteins encoded by the mce1 operon of Mycobacterium tuberculosis. Scand J Immunol 50, 510-518.
    • (1999) Scand J Immunol , vol.50 , pp. 510-518
    • Ahmad, S.1    Akbar, P.K.2    Wiker, H.G.3    Harboe, M.4    Mustafa, A.S.5
  • 2
    • 4944261797 scopus 로고    scopus 로고
    • Mammalian cell-entry proteins encoded by the mce3 operon of Mycobacterium tuberculosis are expressed during natural infection in humans
    • Ahmad, S., El-Shazly, S., Mustafa, A. S. & Al-Attiyah, R. (2004). Mammalian cell-entry proteins encoded by the mce3 operon of Mycobacterium tuberculosis are expressed during natural infection in humans. Scand J Immunol 60, 382-391.
    • (2004) Scand J Immunol , vol.60 , pp. 382-391
    • Ahmad, S.1    El-Shazly, S.2    Mustafa, A.S.3    Al-Attiyah, R.4
  • 3
    • 34548475774 scopus 로고    scopus 로고
    • The N-terminal domain of OmpATb is required for membrane translocation and pore-forming activity in mycobacteria
    • Alahari, A., Saint, N., Campagna, S., Molle, V., Molle, G. & Kremer, L. (2007). The N-terminal domain of OmpATb is required for membrane translocation and pore-forming activity in mycobacteria. J Bacteriol 189, 6351-6358.
    • (2007) J Bacteriol , vol.189 , pp. 6351-6358
    • Alahari, A.1    Saint, N.2    Campagna, S.3    Molle, V.4    Molle, G.5    Kremer, L.6
  • 4
  • 5
    • 3042521098 scopus 로고    scopus 로고
    • Improved prediction of signal peptides: SignalP 3.0
    • Bendtsen, J. D., Nielsen, H., von Heijne, G. & Brunak, S. (2004b). Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340, 783-795.
    • (2004) J Mol Biol , vol.340 , pp. 783-795
    • Bendtsen, J.D.1    Nielsen, H.2    Von Heijne, G.3    Brunak, S.4
  • 7
    • 3242879514 scopus 로고    scopus 로고
    • BOMP: A program to predict integral β-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria
    • Berven, F. S., Flikka, K., Jensen, H. B. & Eidhammer, I. (2004). BOMP: a program to predict integral β-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Nucleic Acids Res 32, W394-W399.
    • (2004) Nucleic Acids Res , vol.32
    • Berven, F.S.1    Flikka, K.2    Jensen, H.B.3    Eidhammer, I.4
  • 10
  • 11
    • 0037569526 scopus 로고    scopus 로고
    • Fishing new proteins in the twilight zone of genomes: The test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria
    • Casadio, R., Fariselli, P., Finocchiaro, G. & Martelli, P. L. (2003). Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Protein Sci 12, 1158-1168.
    • (2003) Protein Sci , vol.12 , pp. 1158-1168
    • Casadio, R.1    Fariselli, P.2    Finocchiaro, G.3    Martelli, P.L.4
  • 15
    • 0033106244 scopus 로고    scopus 로고
    • Evaluation and improvement of multiple sequence methods for protein secondary structure prediction
    • Cuff, J. A. & Barton, G. J. (1999). Evaluation and improvement of multiple sequence methods for protein secondary structure prediction. Proteins 34, 508-519.
    • (1999) Proteins , vol.34 , pp. 508-519
    • Cuff, J.A.1    Barton, G.J.2
  • 16
    • 0034663597 scopus 로고    scopus 로고
    • Application of multiple sequence alignment profiles to improve protein secondary structure prediction
    • Cuff, J. A. & Barton, G. J. (2000). Application of multiple sequence alignment profiles to improve protein secondary structure prediction. Proteins 40, 502-511.
    • (2000) Proteins , vol.40 , pp. 502-511
    • Cuff, J.A.1    Barton, G.J.2
  • 17
    • 1242352009 scopus 로고    scopus 로고
    • The structure of a mycobacterial outer-membrane channel
    • Faller, M., Niederweis, M. & Schulz, G. E. (2004). The structure of a mycobacterial outer-membrane channel. Science 303, 1189-1192.
    • (2004) Science , vol.303 , pp. 1189-1192
    • Faller, M.1    Niederweis, M.2    Schulz, G.E.3
  • 19
    • 0032815631 scopus 로고    scopus 로고
    • Disruption of the mycobacterial cell entry gene of Mycobacterium bovis BCG results in a mutant that exhibits a reduced invasiveness for epithelial cells
    • Flesselles, B., Anand, N. N., Remani, J., Loosmore, S. M. & Klein, M. H. (1999). Disruption of the mycobacterial cell entry gene of Mycobacterium bovis BCG results in a mutant that exhibits a reduced invasiveness for epithelial cells. FEMS Microbiol Lett 177, 237-242.
    • (1999) FEMS Microbiol Lett , vol.177 , pp. 237-242
    • Flesselles, B.1    Anand, N.N.2    Remani, J.3    Loosmore, S.M.4    Klein, M.H.5
  • 21
    • 40849118255 scopus 로고    scopus 로고
    • Bacterial growth and cell division: A mycobacterial perspective
    • Hett, E. C. & Rubin, E. J. (2008). Bacterial growth and cell division: a mycobacterial perspective. Microbiol Mol Biol Rev 72, 126-156.
    • (2008) Microbiol Mol Biol Rev , vol.72 , pp. 126-156
    • Hett, E.C.1    Rubin, E.J.2
  • 22
    • 41649116701 scopus 로고    scopus 로고
    • Disclosure of the mycobacterial outer membrane: Cryoelectron tomography and vitreous sections reveal the lipid bilayer structure
    • Hoffmann, C., Leis, A., Niederweis, M., Plitzko, J. M. & Engelhardt, H. (2008). Disclosure of the mycobacterial outer membrane: cryoelectron tomography and vitreous sections reveal the lipid bilayer structure. Proc Natl Acad Sci U S A 105, 3963-3967.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 3963-3967
    • Hoffmann, C.1    Leis, A.2    Niederweis, M.3    Plitzko, J.M.4    Engelhardt, H.5
  • 24
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh, A., Larsson, B., von Heijne, G. & Sonnhammer, E. L. (2001). Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305, 567-580.
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.4
  • 25
    • 69949116837 scopus 로고    scopus 로고
    • Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods
    • Leversen, N. A., de Souza, G. A., Malen, H., Prasad, S., Jonassen, I. & Wiker, H. G. (2009). Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods. Microbiology 155, 2375-2383.
    • (2009) Microbiology , vol.155 , pp. 2375-2383
    • Leversen, N.A.1    De Souza, G.A.2    Malen, H.3    Prasad, S.4    Jonassen, I.5    Wiker, H.G.6
  • 26
    • 34249701192 scopus 로고    scopus 로고
    • Comprehensive analysis of exported proteins from Mycobacterium tuberculosis H37Rv
    • Malen, H., Berven, F. S., Fladmark, K. E. & Wiker, H. G. (2007). Comprehensive analysis of exported proteins from Mycobacterium tuberculosis H37Rv. Proteomics 7, 1702-1718.
    • (2007) Proteomics , vol.7 , pp. 1702-1718
    • Malen, H.1    Berven, F.S.2    Fladmark, K.E.3    Wiker, H.G.4
  • 27
    • 1242341327 scopus 로고    scopus 로고
    • Macro-array and bioinformatic analyses reveal mycobacterial 'core' genes, variation in the ESAT-6 gene family and new phylogenetic markers for the Mycobacterium tuberculosis complex
    • Marmiesse, M., Brodin, P., Buchrieser, C., Gutierrez, C., Simoes, N., Vincent, V., Glaser, P., Cole, S. T. & Brosch, R. (2004). Macro-array and bioinformatic analyses reveal mycobacterial 'core' genes, variation in the ESAT-6 gene family and new phylogenetic markers for the Mycobacterium tuberculosis complex. Microbiology 150, 483-496.
    • (2004) Microbiology , vol.150 , pp. 483-496
    • Marmiesse, M.1    Brodin, P.2    Buchrieser, C.3    Gutierrez, C.4    Simoes, N.5    Vincent, V.6    Glaser, P.7    Cole, S.T.8    Brosch, R.9
  • 28
    • 33947511253 scopus 로고    scopus 로고
    • The TB pandemic: An old problem seeking new solutions
    • Meya, D. B. & McAdam, K. P. (2007). The TB pandemic: an old problem seeking new solutions. J Intern Med 261, 309-329.
    • (2007) J Intern Med , vol.261 , pp. 309-329
    • Meya, D.B.1    McAdam, K.P.2
  • 29
    • 42949135614 scopus 로고    scopus 로고
    • Nutrient acquisition by mycobacteria
    • Niederweis, M. (2008). Nutrient acquisition by mycobacteria. Microbiology 154, 679-692.
    • (2008) Microbiology , vol.154 , pp. 679-692
    • Niederweis, M.1
  • 31
    • 33746783675 scopus 로고    scopus 로고
    • Computational identification of beta-barrel outer-membrane proteins in Mycobacterium tuberculosis predicted proteomes as putative vaccine candidates
    • Pajon, R., Yero, D., Lage, A., Llanes, A. & Borroto, C. J. (2006). Computational identification of beta-barrel outer-membrane proteins in Mycobacterium tuberculosis predicted proteomes as putative vaccine candidates. Tuberculosis (Edinb) 86, 290-302.
    • (2006) Tuberculosis (Edinb) , vol.86 , pp. 290-302
    • Pajon, R.1    Yero, D.2    Lage, A.3    Llanes, A.4    Borroto, C.J.5
  • 33
    • 67849103758 scopus 로고    scopus 로고
    • HHomp - Prediction and classification of outer membrane proteins
    • Remmert, M., Linke, D., Lupas, A. N. & Soding, J. (2009). HHomp - prediction and classification of outer membrane proteins. Nucleic Acids Res 37, W446-W451.
    • (2009) Nucleic Acids Res , vol.37
    • Remmert, M.1    Linke, D.2    Lupas, A.N.3    Soding, J.4
  • 34
    • 0345701347 scopus 로고    scopus 로고
    • Genes required for mycobacterial growth defined by high density mutagenesis
    • Sassetti, C. M., Boyd, D. H. & Rubin, E. J. (2003). Genes required for mycobacterial growth defined by high density mutagenesis. Mol Microbiol 48, 77-84.
    • (2003) Mol Microbiol , vol.48 , pp. 77-84
    • Sassetti, C.M.1    Boyd, D.H.2    Rubin, E.J.3
  • 36
    • 0030447720 scopus 로고    scopus 로고
    • Structure of staphylococcal α-hemolysin, a heptameric transmembrane pore
    • Song, L., Hobaugh, M. R., Shustak, C., Cheley, S., Bayley, H. & Gouaux, J. E. (1996). Structure of staphylococcal α-hemolysin, a heptameric transmembrane pore. Science 274, 1859-1866.
    • (1996) Science , vol.274 , pp. 1859-1866
    • Song, L.1    Hobaugh, M.R.2    Shustak, C.3    Cheley, S.4    Bayley, H.5    Gouaux, J.E.6
  • 38
    • 0035028415 scopus 로고    scopus 로고
    • MspA provides the main hydrophilic pathway through the cell wall of Mycobacterium smegmatis
    • Stahl, C., Kubetzko, S., Kaps, I., Seeber, S., Engelhardt, H. & Niederweis, M. (2001). MspA provides the main hydrophilic pathway through the cell wall of Mycobacterium smegmatis. Mol Microbiol 40, 451-464.
    • (2001) Mol Microbiol , vol.40 , pp. 451-464
    • Stahl, C.1    Kubetzko, S.2    Kaps, I.3    Seeber, S.4    Engelhardt, H.5    Niederweis, M.6
  • 39
    • 84891371714 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis Rv0899 adopts a mixed α/β-structure and does not form a transmembrane β-barrel
    • Teriete, P., Yao, Y., Kolodzik, A., Yu, J., Song, H., Niederweis, M. & Marassi, F. M. (2010). Mycobacterium tuberculosis Rv0899 adopts a mixed α/β-structure and does not form a transmembrane β-barrel. Biochemistry 49, 2768-2777.
    • (2010) Biochemistry , vol.49 , pp. 2768-2777
    • Teriete, P.1    Yao, Y.2    Kolodzik, A.3    Yu, J.4    Song, H.5    Niederweis, M.6    Marassi, F.M.7
  • 41
    • 0036708003 scopus 로고    scopus 로고
    • The β-barrel finder (BBF) program, allowing identification of outer membrane β-barrel proteins encoded within prokaryotic genomes
    • Zhai, Y. & Saier, M. H., Jr (2002). The β-barrel finder (BBF) program, allowing identification of outer membrane β-barrel proteins encoded within prokaryotic genomes. Protein Sci 11, 2196-2207.
    • (2002) Protein Sci , vol.11 , pp. 2196-2207
    • Zhai, Y.1    Saier Jr., M.H.2
  • 42
    • 49449107199 scopus 로고    scopus 로고
    • Direct visualization of the outer membrane of mycobacteria and corynebacteria in their native state
    • Zuber, B., Chami,M., Houssin, C., Dubochet, J., Griffiths, G. & Daffe, M. (2008). Direct visualization of the outer membrane of mycobacteria and corynebacteria in their native state. J Bacteriol 190, 5672-5680.
    • (2008) J Bacteriol , vol.190 , pp. 5672-5680
    • Zuber, B.1    Chami, M.2    Houssin, C.3    Dubochet, J.4    Griffiths, G.5    Daffe, M.6


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