Y443F mutation in the substrate-binding domain of extracellular PHB depolymerase enhances its PHB adsorption and disruption abilities

Polymer Degradation and Stability

Volumn 95, Issue 8, 2010, Pages 1370-1374

  Hiraishi, Tomohiro ^a   Komiya, Naoya ^a,b   Maeda, Mizuo ^a,b  

^a RIKEN   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

Adsorption; Amino acid substitution; Disruption; PHB depolymerase; poly (R) 3 hydroxybutyrate (PHB); Substrate binding domain (SBD)

Indexed keywords

AMINO ACID SUBSTITUTION; DEPOLYMERASE; POLY--3-HYDROXYBUTYRATE; POLY[(R)-3-HYDROXYBUTYRATE] (PHB); SUBSTRATE-BINDING DOMAINS;

ADSORPTION; ASSOCIATION REACTIONS; DEGRADATION; ENZYMES; ESTERS; HYDROLYSIS; HYDROPHOBICITY; ORGANIC ACIDS; SUBSTRATES;

AMINO ACIDS;

EID: 77955307969     PISSN: 01413910     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.polymdegradstab.2010.01.022     Document Type: Conference Paper

References (30)

1. R.A.J. Verlinden, D.J. Hill, M.A. Kenward, C.D. Williams, and I. Radecka Bacterial synthesis of biodegradable polyhydroxyalkanoates J Appl Microbiol 102 2007 1437 1449
2. R.A. Gross, and B. Kalra Biodegradable polymers for the environment Science 297 2002 803 807
3. D. Jendrossek, and R. Handrick Microbial degradation of polyhydroxyalkanoates Annu Rev Microbiol 56 2002 403 432
4. D. Jendrossek Y. Doi, A. Steinbüchel, Biopolymers 3b: extracellular polyhydroxyalkanoate depolymerases: the key enzymes of PHA degradation 2002 WILEY-VCH Verlag GmbH Germany 41
5. D.Y. Kim, and Y.H. Rhee Biodegradation of microbial and synthetic polyesters by fungi Appl Microbiol Biotechnol 61 2003 300 308
6. T. Hiraishi, and S. Taguchi Enzyme-catalyzed synthesis and degradation of biopolymers Mini-Rev Org Chem 6 2009 44 54
7. Y. Tokiwa, and A. Jarerat Biodegradation of poly(l-lactide) Biotechnol Lett 26 2004 771 777
8. Y. Fan, H. Nishida, Y. Shirai, and T. Endo Control of racemization for feedstock recycling of PLLA Green Chem 5 2003 575 579
9. H. Abe Thermal degradation of environmentally degradable poly(hydroxyalkanoic acid)s Macromol Biosci 6 2006 469 486
10. P. Kurcok, M. Kowalczuk, K. Hennek, and Z. Jedlinski Anionic polymerization of β-lactones initiated with alkali-metal alkoxides: reinvestigation of the polymerization mechanism Macromolecules 25 1992 2017 2020
11. T. Saeki, T. Tsukegi, H. Tsuji, H. Daimon, and K. Fujie Hydrolytic degradation of poly[(R)-3-hydroxybutyric acid] in the melt Polymer 46 2005 2157 2162 (Pubitemid 40320456)
12. B. Schulze, and M.G. Wubbolts Biocatalysis for industrial production of fine chemicals Curr Opin Biotechnol 10 1999 609 615
13. N. Ran, L. Zhao, Z. Chen, and J. Tao Recent applications of biocatalysis in developing green chemistry for chemical synthesis at the industrial scale Green Chem 10 2008 361 372
14. M. Fujita, Y. Kobori, Y. Aoki, N. Matsumoto, H. Abe, and Y. Doi Interaction between poly[(R)-3-hydroxybutyrate] depolymerase and biodegradable polyesters evaluated by atomic force microscopy Langmuir 21 2005 11829 11835
15. N. Matsumoto, M. Fujita, T. Hiraishi, H. Abe, and M. Maeda Adsorption characteristics of P(3HB) depolymerase as evaluated by surface plasmon resonance and atomic force microscopy Biomacromolecules 9 2008 3201 3207
16. T. Hiraishi, Y. Hirahara, Y. Doi, M. Maeda, and S. Taguchi Effects of mutations in the substrate-binding domain of poly[(R)-3-hydroxybutyrate] (PHB) depolymerase from Ralstonia pickettii T1 on PHB degradation Appl Environ Microbiol 72 2006 7331 7338 (Pubitemid 44748450)
17. T. Hiraishi, N. Komiya, N. Matsumoto, H. Abe, M. Fujita, and M. Maeda Degradation and adsorption characteristics of PHB depolymerase as revealed by kinetics of mutant enzymes with amino acid substitution in substrate-binding domain Biomacromolecules 11 2010 113 119
18. M. Scandola, M.L. Focarete, and G. Frisoni Simple kinetic model for the heterogeneous enzymatic hydrolysis of natural poly(3-hydroxybutyrate) Macromolecules 31 1998 3846 3851
19. O.G. Berg, Y. Cajal, G.L. Butterfoss, R.L. Grey, M.A. Alsina, and B.-Z. Yu Interfacial activation of triglyceride lipase from Thermomyces (Humicola) lanuginosa: kinetic parameters and a basis for control of the lid Biochemistry 37 1998 6615 6627
20. J. Cheng, A.Z. Randall, M.J. Sweredoski, and P. Baldi SCRATCH: a protein structure and structural feature prediction server Nucleic Acids Res 33 2005 W72 W76
21. J. Kyte, and R.F. Doolittle A simple method for displaying the hydropathic character of protein J Mol Biol 157 1982 105 132
22. P.Y. Chou, and G.D. Fasman Prediction of the secondary structure of proteins from their amino acid sequence Adv Enzymol 47 1978 45 147
23. A.A. Zamyatnin Protein volume in solution Prog Biophys Mol Biol 24 1972 107 123
24. U.K. Laemmli Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 227 1970 680 685
25. M.M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal Biochem 72 1976 248 254
26. K. Mukai, K. Yamada, and Y. Doi Kinetics and mechanism of heterogeneous hydrolysis of poly[(R)-3-hydroxybutyrate] film by PHA depolymerases Int J Biol Macromol 15 1993 361 366
27. O. Shoseyov, Z. Shani, and I. Levy Carbohydrate binding modules: biochemical properties and novel applications Microbiol Mol Biol Rev 70 2006 283 295
28. T. Murase, Y. Suzuki, Y. Doi, and T. Iwata Nonhydrolytic fragmentation of a poly[(R)-3-hydroxybutyrate] single crystal revealed by use of a mutant of polyhydroxybutyrate depolymerase Biomacromolecules 3 2002 312 317
29. Y. Kikkawa, M. Fujita, T. Hiraishi, M. Yoshimoto, and Y. Doi Direct observation of poly(3-hydroxybutyrate) depolymerase adsorbed on polyester thin film by atomic force microscopy Biomacromolecules 5 2004 1642 1646
30. Y. Kikkawa, K. Yamashita, T. Hiraishi, M. Kanesato, and Y. Doi Dynamic adsorption behavior of poly(3-hydroxybutyrate) depolymerase onto polyester surface investigated by QCM and AFM Biomacromolecules 6 2005 2084 2090