Brassica GLABRA2 genes: Analysis of function related to seed oil content and development of functional markers

Theoretical and Applied Genetics

Volumn 120, Issue 8, 2010, Pages 1597-1610

  Chai, Guohua ^a   Bai, Zetao ^a   Wei, Fang ^a   King, Graham J ^b   Wang, Chenggang ^a   Shi, Lei ^a   Dong, Caihua ^a   Chen, Hong ^a   Liu, Shengyi ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b ROTHAMSTED RESEARCH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS SEEDS; BRASSICA; BRASSICA NAPUS; BRASSICA SPECIES; CLEAVAGE SITES; GENE FLOWS; GENOME SEQUENCES; HOMEODOMAIN; INTRON REGIONS; MOLECULAR MARKER; OIL ACCUMULATION; OIL SEED RAPE; ORTHOLOGUES; OVER-EXPRESSION; SEED OIL; SPECIFIC PRIMERS; TRANSGENIC PLANTS; TRANSGENICS; TRICHOME DEVELOPMENT; TRICHOME NUMBERS; WILD TYPES;

AMINO ACIDS; OILS AND FATS; ORGANIC ACIDS; PLANTS (BOTANY); SEED; TRANSCRIPTION; TRANSCRIPTION FACTORS;

GENES;

ARABIDOPSIS; BRASSICA; BRASSICA NAPUS; BRASSICA OLERACEA; BRASSICA RAPA;

AMINO ACID; ARABIDOPSIS PROTEIN; COMPLEMENTARY DNA; GL2 PROTEIN, ARABIDOPSIS; HOMEODOMAIN PROTEIN;

ARTICLE; BIOLOGICAL MODEL; BRASSICA; CHEMISTRY; EXON; GENETIC MARKER; GENETICS; METABOLISM; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; PLANT GENE; PLANT GENOME; PLANT SEED; POLYMERASE CHAIN REACTION; TRANSGENE;

AMINO ACIDS; ARABIDOPSIS PROTEINS; BASE SEQUENCE; BRASSICA; DNA, COMPLEMENTARY; EXONS; GENES, PLANT; GENETIC MARKERS; GENOME, PLANT; HOMEODOMAIN PROTEINS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; MUTATION; POLYMERASE CHAIN REACTION; SEEDS; TRANSGENES;

EID: 77955287454     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1279-8     Document Type: Article

References (50)

1. Ariel FD, Manavella PA, Dezar CA, Chan RL (2007) The true story of the HD-Zip family. Trends Plant Sci 12: 419-426.
2. Baud S, Mendoza MS, To A, Harscoët E, Lepiniec L, Dubreucq B (2007) WRINKLED1 specifies the regulatory action of LEAFY COTYLEDON2 towards fatty acid metabolism during seed maturation in Arabidopsis. Plant J 50: 825-838.
3. Blake NK, Sherman JD, Dvořák J, Talbert LE (2004) Genome-specific primer sets for starch biosynthesis genes in wheat. Theor Appl Genet 109: 1295-1302.
4. Breathnach R, Chambon P (1981) Organization and expression of eucaryotic split genes coding for proteins. Annu Rev Biochem 50: 349-383.
5. Castillo-Davis CI, Hartl D, Guillaume Achaz (2004) cis-Regulatory and protein evolution in orthologous and duplicate genes. Genome Res 14: 1530-1536.
6. Cernac A, Benning C (2004) WRINKLED1 encodes an AP2/EREB domain protein involved in the control of storage compound biosynthesis in Arabidopsis. Plant J 40: 575-585.
7. Chan RL, Gago GM, Palena CM, Gonzalez DH (1998) Homeoboxes in plant development. Biochem Biophys Acta 1442: 1-19.
8. Chen F, Mackey AJ Jr, Stoeckert CJ, Roos DS (2006) OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res 34: 363-368.
9. Christie WW (1991) Gas chromatographic analysis of fatty acid methyl esters with high precision. Lipid Technol 3: 97-98.
10. Fang JG, Twito T, Zhang Z, Chao CCT (2006) Genetic relationships among fruiting-mei (Prunus mume Sieb. et Zucc.) cultivars evaluated with AFLP and SNP markers. Genome 49: 1256-1264.
11. Finkelstein RR, Somerville CR (1990) Three classes of abscisic acid (ABA)-insensitive mutations of Arabidopsis define genes that control overlapping subsets of ABA responses. Plant Physiol 94: 1172-1179.
12. Focks N, Benning C (1998) wrinkled1: a novel, low-seed-oil mutant of Arabidopsis with a deficiency in the seed-specific regulation of carbohydrate metabolism. Plant Physiol 118: 91-101.
13. Gao MJ, Lydiate DJ, Li X, Lui H, Gjetvaj B, Hegedus DD, Rozwadowski K (2009) Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings. Plant Cell 21: 54-71.
14. Gehring WJ, Qian YQ, Billeter M, Furukubo-Tokunaga K, Schier AF, Resendez-Perez D, Affolter M, Otting G, Wüthrich K (1994) Homeodomain-DNA recognition. Cell 78: 211-223.
15. Guan XY, Li QJ, Shan CM, Wang S, Mao YB, Wang LJ, Chen XY (2008) The HD-Zip IV gene GaHOX1 from cotton is a functional homologue of the Arabidopsis GLABRA2. Physiol Plant 134: 174-182.
16. Hajduch M, Casteel JE, Hurrelmeyer KE, Song Z, Agrawal GK, Thelen JJ (2006) Proteomic analysis of seed filling in Brassica napus. Developmental characterization of metabolic isozymes using high-resolution two-dimensional gel electrophoresis. Plant Physiol 141: 32-46.
17. Hicks GR, Smith HM, Shieh M, Raikhel NV (1995) Three classes of nuclear import signals bind to plant nuclei. Plant Physiol 107: 1055-1058.
18. Hua SJ, Shamsi IH, Guo Y, Park H, Chen MX, Shi CG, Meng HB, Jiang LX (2009) Sequence, expression divergence and complementation of homologous ALCATRAZ loci in Brassica napus. Planta 230: 493-503.
19. Ingouff M, Farbos I, Lagercrantz U, von Arnold S (2001) PaHB1 is an evolutionary conserved HD-GL2 homeobox gene expressed in the protoderm during Norway spruce embryo development. Genesis 30: 220-230.
20. Ingouff M, Farbos I, Wiweger M, von Arnold S (2003) The molecular characterization of PaHB2, a homeobox gene of the HD-GL2 family expressed during embryo development in Norway spruce. J Exp Bot 54: 1343-1350.
21. Ingram GC, Magnard JL, Verges P, Dumas C, Rogowsky PM (1999) ZmOCL1, an HDGL2 family homeobox gene, is expressed in the outer cell layer throughout maize development. Plant Mol Biol 40: 343-354.
22. Ingram GC, Boisnard-Lorig C, Dumas C, Rogowsky PM (2000) Expression patterns of genes encoding HD-ZipIV homeodomain proteins define specific domains in maize embryos and meristems. Plant J 22: 401-414.
23. Ito M, Sentoku N, Nishimura A, Hong SK, Sato Y, Matsuoka M (2002) Position dependent expression of GL2-type homeobox gene, Roc1: significance for protoderm differentiation and radial pattern formation in early rice embryogenesis. Plant J 29: 497-507.
24. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245.
25. Li YH, Beisson F, Pollard M, Ohlrogge J (2006) Oil content of Arabidopsis seeds: the influence of seed anatomy, light and plant-to-plant variation. Phytochemistry 67: 904-915.
26. Lysak MA, Koch MA, Pecinka A, Schubert I (2005) Chromosome triplication found across the tribe Brassiceae. Genome Res 15: 516-525.
27. Mu JY, Tan HL, Zheng Q, Fu FY, Liang Y, Zhang JA, Yang XH, Wang T, Chong K, Wang XJ, Zuo JR (2008) LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis. Plant Physiol 148: 1042-1054.
28. Nadeau JA, Zhang XS, Li J, O'Neill SD (1996) Ovule development: identification of stage-specific and tissue-specific cDNAs. Plant Cell 8: 213-239.
29. Nakamura M, Katsumata H, Abe M, Yabe N, Komeda Y, Yamamoto KT, Takahashi T (2006) Characterization of the class IV homeodomain-leucine zipper gene family in Arabidopsis. Plant Physiol 141: 1363-1375.
30. Ogas J, Kaufmann S, Henderson J, Somerville C (1999) PICKLE is a CHD3 chromatin-remodeling factor that regulates the transition from embryonic to vegetative development in Arabidopsis. Proc Natl Acad Sci USA 96: 13839-13844.
31. Ohashi Y, Oka A, Ruberti I, Morelli G, Aoyama T (2002) Entopically additive expression of GLABRA2 alters the frequency and spacing of trichome initiation. Plant J 29: 359-369.
32. Ostergaard L, King GJ (2008) Standardized gene nomenclature for the Brassica genus. Plant Methods 4: 10.
33. Parkin IAP, Sharpe AG, Lydiate DJ (2003) Patterns of genome duplication within the Brassica napus genome. Genome 46: 291-303.
34. Rahman M, Sun ZD, McVetty PBE, Li GY (2008) High throughput genome-specific molecular markers for erucic acid genes in Brassica napus (L.) for marker-assisted selection in plant breeding. Theor Appl Genet 117: 895-904.
35. Roesler K, Shintani D, Savage L, Boddupalli S, Ohlrogge J (1997) Targeting of the Arabidopsis homomeric acetyl-coenzyme A carboxylase to plastids of rapeseeds. Plant Physiol 113: 75-81.
36. Shen B, Sinkevicius KW, Selinger DA, Tarczynski MC (2006) The homeobox gene GLABRA2 affects seed oil content in Arabidopsis. Plant Mol Biol 60: 377-387.
37. Snowdon RJ, Friedt W (2004) Molecular markers in Brassica oilseed breeding: current status and future possibilities. Plant Breed 123: 1-8.
38. Snowdon RJ, Friedrich T, Friedt W, Köhler W (2002) Identifying the chromosomes of the A- and C-genome diploid Brassica species B. rapa (syn. campestris) and B. oleracea in their amphidiploid B. napus. Theor Appl Genet 104: 533-538.
39. Sonnhammer EL, Koonin EV (2002) Orthology, paralogy and proposed classification for paralog subtypes. Trends Genet 18: 619-620.
40. Szymanski DB, Lloyd AM, Marks MD (2000) Progress in the molecular genetic analysis of trichome initiation and morphogenesis in Arabidopsis. Trends Plant Sci 5: 214-219.
41. Tiedemann J, Rutten T, Mönke G, Vorwieger A, Rolletschek H, Meissner D, Milkowski C, Petereck S, Mock HP, Zank T, Bäumlein (2008) Dissection of a complex seed phenotype: novel insights of FUSCA3 regulated developmental processes. Dev Biol 317: 1-12.
42. Vain P, Afolabi AS, Worland B, Snaps JW (2003) Transgene behaviour in populations of rice plants transformed using a new dual binary vector system: pGreen/pSoup. Theor Appl Genet 107: 210-217.
43. Wang N, Wang Y, Tian F, King GJ, Zhang C, Long Y, Shi L, Meng J (2008) A functional genomics resource for Brassica napus: development of an EMS mutagenized population and discovery of FAE1 point mutations by TILLING. New Phytol 180: 751-765.
44. Wang Z, Mao H, Dong CH, Ji RQ, Cai L, Fu H, Liu SY (2009) Overexpression of Brassica napus MPK4 enhances resistance to Sclerotinia sclerotiorum in oilseed rape. MPMI 22: 235-244.
45. Wei F, Gao GZ, Wang XF, Dong XY, Li PP, Hua W, Wang X, Wu XM, Chen H (2008) Quantitative determination of oil content in small quantity of oilseed rape by ultrasound-assisted extraction combined with gas chromatography. Ultrason Sonochem 15: 938-942.
46. Wei B, Jing RL, Wang CS, Chen JB, Mao XG, Chang XP, Jia JZ (2009) Dreb1 genes in wheat (Triticumaestivum L.): development of functional markers and gene mapping based on SNPs. Mol Breed 23: 13-22.
47. Weselake RJ, Shah S, Taylor DC, Zou JT, Laroche A, Moloney MM, Rakow G, Raney JP, Harwood JL (2007) Transformation of Brassica napus with diacylglycerol acyltransferase1 results in increased seed oil content. In: Benning C, Ohlrogge J (eds) Current advances in the biochemistry and cell biology of plant lipids. Aardvark Global, Salt Lake City, pp 232-234.
48. Weselake RJ, Taylor DC, Rahaman MH, Shah S, Laroche A, McVetty PB, Harwood JL (2009) Increasing the flow of carbon into seed oil. Biotechnol Adv 27: 866-878.
49. Wu YH, Xiao L, Wu G, Lu CM (2007) Cloning of fatty acid elongase1 gene and molecular identification of A and C genome in Brassica species. Sci China Ser C Life Sci 50: 343-349.
50. Yang JY, Chung MC, Tu CY, Leu WM (2002) OSTF1: a HD-GL2 family homeobox gene is developmentally regulated during early embryogenesis in rice. Plant Cell Physiol 43: 628-638.