The molecular characterization of PaHB2, a homeobox gene of the HD-GL2 family expressed during embryo development in Norway spruce

Journal of Experimental Botany

Volumn 54, Issue 386, 2003, Pages 1343-1350

  Ingouff, Mathieu ^a,b   Farbos, Isabelle ^a   Wiweger, Malgorzata ^a,c   Von Arnold, Sara ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b UNIVERSITÉ LYON 1   (France)

^c PLANT BREEDING AND ACCLIMATIZATION INSTITUTE NATIONAL RESEARCH INSTITUTE   (Poland)

Author keywords

Embryogenesis; Gymnosperm; HD GL2; Homeobox; Picea abies; Radial pattern

Indexed keywords

MOLECULAR STRUCTURE; PLANTS (BOTANY); PROTEINS; SEED;

HOMEOBOX GENES;

GENES;

ANL2 PROTEIN, ARABIDOPSIS; ARABIDOPSIS PROTEIN; COMPLEMENTARY DNA; HOMEODOMAIN PROTEIN; MESSENGER RNA; PAHB1 PROTEIN, PICEA ABIES; VEGETABLE PROTEIN;

ARTICLE; CHEMISTRY; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; IN SITU HYBRIDIZATION; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT SEED; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SPRUCE;

ARABIDOPSIS PROTEINS; BASE SEQUENCE; CLONING, MOLECULAR; DNA, COMPLEMENTARY; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; HOMEODOMAIN PROTEINS; IN SITU HYBRIDIZATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; PICEA; PLANT PROTEINS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; SEEDS; SEQUENCE ANALYSIS, DNA;

GENES; MOLECULAR STRUCTURE; PICEA ABIES; PROTEINS; SEEDS;

ABIES; GYMNOSPERMAE; MAGNOLIOPHYTA; PICEA; PICEA ABIES; SPERMATOPHYTA;

EID: 0038739509     PISSN: 00220957     EISSN: None     Source Type: Journal    
DOI: 10.1093/jxb/erg145     Document Type: Article

References (32)

1. Bashirullah A, Cooperstock RL, Lipshitz HD. 1998. RNA localization in development. Annual Review of Biochemistry 67, 335-394
2. Bernatzky R, Tanksley SD. 1986. Genetics of actin-related sequences in tomato. Theoretical and Applied Genetics 73, 314-321.
3. Cantón FR, Suàrez MF, Josè-Estanyol M, Cánovas FM. 1999. Expression analysis of a cytosolic glutamine synthetase gene in cotyledons of Scots pine seedlings: developmental, light regulation and spatial distribution of specific transcripts. Plant Molecular Biology 40, 623-634.
4. Chan RL, Gago GM, Palena CM, Gonzalez DH. 1998. Homeoboxes in plant development, Biochimica et Biophysica Acta 1442, 1-19.
5. Chang S, Puryear J, Cairney J. 1993. A simple and efficient method for isolating RNA from pine tree. Plant Molecular Biology Reporter 11, 114-117.
6. Dubnau J, Struhl G. 1996. RNA recognition and translational regulation by a homeodomain protein. Nature 379, 694-699.
7. Egertsdotter U, von Arnold S. 1993. Classification of embryogenic cell lines of Picea abies as regards protoplast isolation and culture. Journal of Plant Physiology 141, 222-229.
8. Filonova LH, Bozhkov PV, von Arnold S. 2000. Developmental pathway of somatic embryogenesis in Picea abies as revealed by time-lapse tracking. Journal of Experimental Botany 51, 249-264.
9. Fontes AM, Ito J, Jacob-Lorena M. 1999. Control of messenger RNA stability during development. Current Topics in Developmental Biology 44, 171-202.
10. Gehring WJ, Affolter M, Bürglin T. 1994. Homeodomain proteins. Annual Review of Biochemistry 63, 487-526.
11. Ingouff M, Farbos I, Lagercrantz U, von Arnold S. 2001. PaHB1 is an evolutionary conserved HD-GL2 homeobox gene expressed in the protoderm during Norway spruce embryo development. Genesis 30, 220-230.
12. Ingram GC, Magnard JL, Vergne P, Dumas C, Rogowsky PM. 1999. ZmOCL1, an HDGL2 family homeobox gene, is expressed in the outer cell layer throughout maize development. Plant Molecular Biology 40, 343-354.
13. Ingram GC, Bolsnard-Lorig C, Dumas C, Rogowsky PM. 2000. Expression patterns of genes encoding HD-ZipIV homeodomain proteins define specific domains in maize embryos and meristems. The Plant Journal 22, 401-414.
14. Ito M, Sentoku N, Nishimura A, Hong SK, Sato Y, Matsuoka M. 2002. Position dependent expression of GL2-type homeobox gene, Roc1: significance for protoderm differentiation and radial pattern formation in early rice embryogenesis. The Plant Journal 29, 497-507.
15. Kappen C. 2000. Analysis of a complete homeobox repertoire: implications for the evolution of diversity. Proceedings of the National Academy of Sciences, USA 97, 4481-4486.
16. Kubo H, Peeters AJ, Aarts MG, Pereira A, Koornneef M. 1999. ANTHOCYANINLESS2, a homeobox gene affecting anthocyanin distribution and root development in Arabidopsis. The Plant Cell 11, 1217-1226.
17. Kumar S, Tamura K, Jakobsen I, Nei M. 2000. MEGA: Molecular evolutionary genetics analysis, version 2. softwares for microcomputers.
18. Kvarnheden A, Tandre K, Engström P. 1995. A cdc2 homologue and closely related processed retropseudogenes from Norway spruce. Plant Molecular Biology 27, 391-403.
19. Langdale JA. 1992. In situ hybridization. In: Freeling M, Walbot V, ed. The maize handbook. Berlin: Springer-Verlag, 165-180.
20. Lu P, Porat R, Nadeau JA, O'Neill SD. 1996. Identification of a meristem L1 layer-specific gene in Arabidopsis that is expressed during embryonic pattern formation and defines a new class of homeobox genes. The Plant Cell 8, 2155-2168.
21. Pesole G, Liuni S, Grillo G, Licciulli F, Larizza A, Makalowski W, Saccone C. 2000. UTRdb and UTRsite: specialized database of sequences and functional elements of 5′ and 3′ untranslated regions of eukaryotic mRNAs. Nucleic Acids Research 28, 193-196.
22. Ponting CP, Aravind L. 1999. START: a lipid-binding domain in StAR, HD-ZIP and signalling proteins. Trends in Biochemical Sciences 24, 130-132.
23. Rivera-Pomar R, Niessing D, Schmidt-Ott U, Gehring WJ, Jäckle H. 1996. RNA binding and translational suppression by bicoid. Nature 379, 746-749.
24. Romberger JA, Hejnowicz Z, Hill JF. 1993. Plant structure: function and development. Berlin: Springer-Verlag.
25. Sessions A, Weigel D, Yanovsky MF. 1999. The Arabidopsis thaliana MERISTEM LAYER 1 promoter specifies epidermal expression in meristems and young primordia. The Plant Journal 20, 259-263
26. Singh H. 1978. Embryology of gymnosperms. In: Zimmerman W, Carlquist Z, Ozenda P, Wulff HD, eds. Handbuch der Pflanzenanatomie. Berlin, Stuttgart: Gebrüder Borntraeger, 187-241.
27. Stewart WN, Rothwell GW. 1993. Paleobotany and the evolution of plants. Cambridge: Cambridge University Press.
28. Swofford DL. 1999. PAUP: phylogenetic analysis using parsimony, version 4.0b2. Sunderland: Sinauer Associates, Inc Publishers.
29. Tavares R, Aubourg S, Lecharny A, Kreis M. 2000. Organization and structural evolution of four multigene families in Arabidopsis thaliana: AtLCAD, AtLGT, AtMYST, and AtHD-GL2. Plant Molecular Biology 42, 703-717.
30. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680.
31. Tsujishita Y, Hurley JH. 2000. Structure and lipid transport mechanism of a StAR-related domain. Nature Structural Biology 7, 408-414.
32. Zhang Y, Frohman MA. 1998. Using Rapid Amplification of cDNAs Ends (RACE) to obtain full-length cDNAs. In: Cowell IG, Austin CA, eds. cDNA library protocols, Vol. 69. Totowa: Humana Press Inc., 61-88.