Dreb1 genes in wheat (Triticum aestivum L.): Development of functional markers and gene mapping based on SNPs

Molecular Breeding

Volumn 23, Issue 1, 2009, Pages 13-22

  Wei, Bo ^a   Jing, Ruilian ^a   Wang, Chengshe ^b   Chen, Jibao ^a   Mao, Xinguo ^a   Chang, Xiaoping ^a   Jia, Jizeng ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b NORTHWEST A F UNIVERSITY   (China)

Author keywords

Dehydration responsive element binding proteins; Dreb; Functional marker; Single nucleotide polymorphisms; Wheat

Indexed keywords

AGRONOMY; DROUGHT; MAPPING; PLANTS (BOTANY); TEMPERATURE;

DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN; DEHYDRATION-RESPONSIVE ELEMENTS; DREB; ELEMENT-BINDING PROTEINS; FUNCTIONAL MARKER; GENE MAPPING; SINGLE NUCLEOTIDE POLYMORPHISMS; SPECIFIC PRIMERS; WHEAT; WHEAT (TRITICUM AESTIVUM L.);

GENES;

TRITICUM AESTIVUM;

EID: 56649086745     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-008-9209-z     Document Type: Article

References (27)

1. JR Andersen T Lübberstedt 2003 Functional markers in plants Trends Plant Sci 8 554 560 10.1016/j.tplants.2003.09.010
2. M Bagge X Xia T Lübberstedt 2007 Functional markers in wheat Curr Opin Plant Biol 10 211 216 10.1016/j.pbi.2007.01.009
3. NK Blake JD Sherman JL Dvořák LE Talbert 2004 Genome-specific primer sets for starch biosynthesis genes in wheat Theor Appl Genet 109 1295 1302 10.1007/s00122-004-1743-4
4. AJ Brookes 1999 The essence of SNPs Gene 234 177 186 10.1016/S0378- 1119(99)00219-X
5. S Brunner B Keller C Feuillet 2000 Molecular mapping of the Rph7.g leaf rust resistance gene in barley (Hordeum vulgare L.) Theor Appl Genet 101 783 788 10.1007/s001220051544
6. JQ Chen Y Dong YJ Wang Q Liu JS Zhang SY Chen 2003 An AP2/EREBP-type transcription-factor gene from rice is cold-inducible and encodes a nuclear-localized protein Theor Appl Genet 107 972 979 10.1007/s00122-003-1346-5
7. JB Chen RL Jing HY Yuan B Wei XP Chang 2005 Single nucleotide polymorphism of TaDREB1 gene in wheat germplasm Sci Agric Sin 38 2387 2394
8. E Drenkard BG Richter S Rozen LM Stutius NA Angell M Mindrinos 2000 A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis Plant Physiol 124 1483 1492 10.1104/pp.124.4.1483
9. JG Dubouzet Y Sakuma Y Ito M Kasuga EG Dubouzet S Miura 2003 OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression Plant J 33 751 763 10.1046/j.1365-313X.2003.01661.x
10. XY He ZH He LP Zhang DJ Sun CF Morris EP Fuerst 2007 Allelic variation of polyphenol oxidase (PPO) genes located on chromosomes 2A and 2D and development of functional markers for the PPO genes in common wheat Theor Appl Genet 115 47 58 10.1007/s00122-007-0539-8
11. JW Holloway B Beghé S Turner LJ Hinks IN Day WM Howell 1999 Comparison of three methods for single nucleotide polymorphism typing for DNA bank studies: sequence-specific oligonucleotide probe hybridisation, TaqMan liquid phase hybridisation, and microplate array diagonal gel electrophoresis (MADGE) Hum Mutat 14 340 347 10.1002/(SICI)1098-1004(199910)14:4<340::AID- HUMU10>3.0.CO;2-Z
12. SC Jeong MA Maroof 2004 Detection and genotyping of SNPs tightly linked to two disease resistance loci, Rsv1 and Rsv3, of soybean Plant Breed 123 305 310 10.1111/j.1439-0523.2004.00981.x
13. S Kwok DE Kellogg N McKinney D Spasic L Goda C Levenson 1990 Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies Nucleic Acids Res 18 999 1005 10.1093/nar/18.4.999
14. ES Lander D Botstein 1989 Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps Genetics 21 185 199
15. Q Liu M Kasuga Y Sakuma H Abe S Miura K Yamaguchi-Shinozaki 1998 Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis Plant Cell 10 1391 1406
16. K Mochida Y Yamazaki Y Ogihara 2003 Discrimination of homoeologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags Mol Genet Genomics 270 371 377 10.1007/s00438-003-0939-7
17. CR Newton A Graham LE Heptinstall SJ Powell C Summers N Kalsheker 1989 Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS) Nucleic Acids Res 17 2503 2516 10.1093/nar/17.7.2503
18. F Qin J Li GY Zhang J Zhao SY Chen Q Liu 2003 Isolation and structural analysis of DRE-binding transcription factor from Maize (Zea mays L.) Acta Bot Sin 45 331 339
19. PJ Sharp M Kreis PR Shewry MD Gale 1988 Location of β-amylase sequence in wheat and its relatives Theor Appl Genet 75 289 290 10.1007/BF00303966
20. YG Shen WK Zhang SJ He JS Zhang Q Liu SY Chen 2003 An EREBP/AP2-type protein in Triticum aestivum was a DRE-binding transcription factor induced by cold, dehydration and ABA stress Theor Appl Genet 106 923 930
21. YG Shen WK Zhang DQ Yan BX Du JS Zhang Q Liu 2003 Characterization of a DRE-binding transcription factor from a halophyte Atriplex hortensis Theor Appl Genet 107 155 161
22. DJ Somers R Kirkpatrick M Moniwa A Walsh 2003 Mining single-nucleotide polymorphisms from hexaploid wheat ESTs Genome 46 431 437 10.1139/g03-027
23. XH Tian XP Li HL Zhou JS Zhang ZZ Gong SY Chen 2005 OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element Acta Bot Sin 47 467 476
24. L Tommasini N Yahiaoui P Srichumpa B Keller 2006 Development of functional markers specific for seven Pm3 resistance alleles and their validation in the bread wheat gene pool Theor Appl Genet 114 165 175 10.1007/s00122-006-0420-1
25. B Wei RL Jing CS Wang XP Chang 2006 Assaying single nucleotide polymorphism in wheat (Triticum aestivum L.) with allele-specific PCR Sci Agric Sin 39 1313 1320
26. DY Wu L Ugozzoli BK Pal RB Wallace 1989 Allele-specific enzymatic amplification of β-globin genomic DNA for diagnosis of sickle cell anemia Proc Natl Acad Sci USA 86 2757 2760 10.1073/pnas.86.8.2757
27. XL Zhao W Ma KR Gale ZS Lei ZH He QX Sun 2007 Identification of SNPs and development of functional markers for LMW-GS genes at Glu-D3 and Glu-B3 loci in bread wheat (Triticum aestivum L.) Mol Breed 20 223 231 10.1007/s11032-007-9085- y