Proline-rich salivary proteins have extended conformations

Biophysical Journal

Volumn 99, Issue 2, 2010, Pages 656-665

  Boze, Hélène ^a   Marlin, Thérèse ^a   Durand, Dominique ^b   Pérez, Javier ^c   Vemhet, Aude ^a   Canon, Francis ^a   Sami Manchado, Pascale ^a   Cheynier, Véronique ^a   Cabane, Bernard ^d  

^a SPO   (France)

^b INSTITUTE FOR INTEGRATIVE BIOLOGY OF THE CELL I2BC   (France)

^c SYNCHROTRON SOLEIL   (France)

^d ESPCI   (France)

Author keywords

[No Author keywords available]

Indexed keywords

PROLINE RICH PROTEIN; RECOMBINANT PROTEIN;

AMINO ACID SEQUENCE; BIOLOGY; CHEMICAL STRUCTURE; CHEMISTRY; GLYCOSYLATION; HUMAN; MOLECULAR GENETICS; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN CONFORMATION; SMALL ANGLE SCATTERING; X RAY DIFFRACTION;

AMINO ACID SEQUENCE; COMPUTATIONAL BIOLOGY; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GLYCOSYLATION; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; RECOMBINANT PROTEINS; SALIVARY PROLINE-RICH PROTEINS; SCATTERING, SMALL ANGLE; X-RAY DIFFRACTION;

EID: 77955216637     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2010.04.050     Document Type: Article

References (61)

1. Uversky, V. N. 2002. Natively unfolded proteins: a point where biology waits for physics. Protein Sci 11:739-756.
2. Dunker, A. K., J. D. Lawson, ..., Z. Obradovic. 2001. Intrinsically disordered protein. J. Mol Graph. Model. 19:26-59.
3. Tompa, P. 2003. The functional benefits of protein disorder. J. Mol. Struct. THEOCHEM. 666-667:361-371.
4. Tompa, P. 2003. Intrinsically unstructured proteins evolve by repeat expansion. Bioessays. 25:847-855.
5. Ward, J. J., J. S. Sodhi, ..., D. T. Jones. 2004. Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J. Mol Biol. 337:635-645.
6. Dyson, H. J., and P. E. Wright. 2005. Intrinsically unstructured proteins and their functions. Nat. Rev. Mol Cell Biol. 6:197-208.
7. Receveur-Bréchot, V., J. M. Bourhis, ..., S. Longhi. 2006. Assessing protein disorder and induced folding. Proteins. 62:24-45.
8. Bernadó, P., and M. Blackledge. 2009. A self-consistent description of the conformational behavior of chemically denatured proteins from NMR. and small angle scattering. Biophys. J. 97:2839-2845.
9. Liu, J., J. R. Faeder, and C. J. Camacho. 2009. Toward a quantitative theory of intrinsically disordered proteins and their function, Proc. Natl. Acad. Sci. USA. 106:19819-19823.
10. Wright, P. E., and H. J. Dyson. 1999. Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm. J. Mol. Biol. 293:321-331.
11. Edgar, W. M. 1992. Saliva: its secretion, composition and functions. Br. Dent. J. 172:305-312.
12. Azen, E. A., E. Amberger, ..., R. L. Niece. 1996. PRB1, PRB2, and PRB4 coded polymorphisms among human salivary concanavalin-A binding, II-1, and Po proline-rich proteins. Am. J. Hum. Genet. 58:143-153.
13. Cid, H., V. Vargas, ..., S. Bustos. 1986. Secondary structure prediction of human salivary proline-rich proteins. FEBS Lett. 198:140-144.
14. Simon, C., I. Planet, and E. J. Dufourc. 2003. Synthesis and circular dichroism study of the human salivary proline-rich protein. IB7. J. Pept. Sci 9:125-131.
15. Pascal, C., F. Pate, ..., M. A. Delsuc. 2009. Study of the interactions between a proline-rich protein and a flavan-3-o1 by NMR: residual structures in the natively unfolded protein provides anchorage points for the ligands. Biopolymers. 91:745-756.
16. Chan, M., and A. Bennick. 2001. Proteolytic processing of a human salivary proline-rich protein precursor by proprotein convertases. Eur. J. Biochem. 268:3423-3431.
17. Baxter, N. J., T. H. Lilley, ..., M. P. Williamson. 1997. Multiple interactions between polyphenols and a salivary proline-rich protein repeat result in complexation and precipitation. Biochemistry. 36: 5566-5577.
18. Lu, Y., and A. Bennick. 1998. Interaction of tannin with, human salivary proline-rich proteins. Arch. Oral Biol. 43:717-728.
19. Mehansho, H., L. G. Butler, and D. M. Carlson. 1987. Dietary tannins and salivary proline-rich proteins: interactions, induction, and defense mechanisms. Annu, Rev. Nutr. 7:423-440.
20. Hagerman, A. E. 1989. Chemistry of tannin-protein complexation. In Chemistry and Significance of Condensed Tannins. R. W. Hemingway and J. J. Karchesy, editors. Plenum Press, New York, NY. 323-331.
21. Sarni-Manchado, P., J.-M. Canals-Bosch, ..., V. Cheynier. 2008. Influence of the glycosylation of human salivary proline-rich proteins on their interactions with condensed tannins. J. Agrie Food Chem. 56:9563-9569.
22. Yokotsuka, K., and V. L. Singleton. 1995. Interactive precipitation between phenolic fractions and peptides in wine-like model solutions: turbidity, particle size, and residual, content as influenced by pH, temperature and peptide concentration. Am. J. Enol. Vitic 46:329-338.
23. Haslam, E. 1998. Practical Polyphenols: From Structure to Molecular Recognition and Physiological Action. Cambridge University Press, Cambridge, UK.
24. Jöbstl, E., J. O'Connell, ..., M. P. Williamson. 2004. Molecular model for astringency produced by polyphenol/protein interactions. Biomacromolecules. 5:942-949.
25. Hatton, M. N., R. E. Loomis, ..., L. A. Tabak. 1985. Masticatory lubrication. The role of carbohydrate in the lubricating property of a salivary glycoprotein-albumin complex. Biochem. J. 230:817-820.
26. Asquith, T. N., J. Uhlig, ..., L. Butler. 1.987. Binding of condensed tannins to salivary proline-rich glycoproteins: the role of carbohydrates. J. Agric. Food Chem. 35:331-334.
27. Loomis, R. E., E. J. Bergey, ..., L. A. Tabak. 1985. Circular dichroism and fluorescence spectroscopic analyses of a proline-rich glycoprotein from human parotid saliva. Int. J. Pept. Protein Res. 26:621-629.
28. Kauffman, D. L., and P. J. Keller. 1979. The basic proline-rich proteins in human parotid saliva from a single subject. Arch. Oral Biol. 24; 249-256.
29. Oho, T., F. Rahemtulla,..., A. Hjerpe. 1992. Purification and characterization of a glycosylated proline-rich protein, from human, parotid saliva. Int. J. Biochem. 24:1159-1168.
30. Pascal, C., F. Bigey, ..., P. Sarni-Manchado. 2006. Overexpression and characterization of two human salivary proline rich proteins. Protein Expr. Purif. 47:524-532.
31. Pascal, C., C. Poncet-Legrand, ..., A. Vernhet. 2007. Interactions between a nonglycosylated human proline-rich protein and flavan3-ols are affected by protein concentration and polyphenol/protein ratio. J. Agric. Food Chem. 55:4895-4901.
32. Canon, F., F. Pate, ..., P. Sarni-Manchado. 2009. Characterization, stoichiometry, and stability of salivary protein-tannin complexes by ESI-MS and ESI-MS/MS. Anal. Bioanal. Chem. 395:2535-2545.
33. Pascal, C., C. Poncet-Legrand, ..., A. Vernhet. 2008. Aggregation of a proline-rich protein induced by epigallocatechin gallate and condensed tannins: effect of protein glycosylation. J. Agric. Food Chem. 56:6724-6732.
34. Bretthauer, R. K., and F. J. Castellino. 1999. Glycosylation of Pichia pastoris-derived proteins. Biotechnol. Appl. Biochem. 30:193-200.
35. Laemmli, U. K. 1970. Cleavage of structural, proteins during the assembly of the head of bacteriophage T4. Nature. 227:680-685.
36. Beeley, J. A., D. Sweeney, ..., K. S. Khoo. 1.991. Sodium dodecyl sulphate-polyacrylamide gel electrophoresis of human parotid salivary proteins. Electrophoresis. 12:1032-1041.
37. Reference deleted at proof.
38. Tschopp, J. F., G. Sverlow, ..., L. Grinna. 1.987. High-level secretion of glycosylated invertase in the methylotrophic yeast, Pichia Pastoris. Nat. Biotechnol. 5:1305-1308.
39. Doco, T., M. A. O'Neill, and P. Pellerin. 2001. Determination of the neutral and acidic glycosyl-residue compositions of plant polysaccharides by GC-EI-MS analysis of the trimethylsilyl methyl glycoside derivatives. Carbohydr. Polym. 46:249-259.
40. Harris, P. J., R. J. Henry, ..., B. A. Stone. 1984. An improved procedure for the methylation analysis of oligosaccharides and polysaccharides. Carbohydr. Res. 127:59-73.
41. Dennis, J. W., M. Granovsky, and C. E. Warren. 1999. Protein glycosylation in development and disease. Bioessays. 21:412-421.
42. Heimerhorst, E. J., and F. G. Oppenheim, 2007. Saliva: a dynamic proteome. J. Dent. Res. 86:680-693.
43. Reddy, M. S., M. J. Levine, and L. A. Tabak. 1982. Structure of the carbohydrate chains of the proline-rich glycoprotein from human parotid saliva. Biochem. Biophys. Res. Commun. 104:882-888.
44. Gillece-Castro, B. L., A. Prakobphol, ..., S. J. Fisher. 1991. Structure and bacterial receptor activity of a human salivary proline-rich glycoprotein. J. Biol. Chem. 266:17358-17368.
45. He, B., K. Wang, ..., A. K. Dunker. 2009. Predicting intrinsic disorder in proteins: an overview. Cell Res. 19:929-949.
46. Guinier, A., and G. Fournet. 1955. Small Angle Scattering of X Rays. Wiley, New York, NY.
47. Glatter, O., and O. Kratky. 1982. Small Angle X-Ray Scattering. Academic Press, New York, NY.
48. Svergun, D. 1992. Determination of the regularization parameter in. indirect-transform methods using perceptual criteria. J. Appl. Cryst. 25:495-503.
49. Grosberg, A. Y., and A. R. Khokhlov. 1994. Statistical Physics of Macromolecules. AIP Press, New York.
50. Burchard, W. 1974. Statistics of star-shaped molecules. I. Stars with polydisperse side chains. Macromolecules. 7:835-841.
51. Rawiso, M., R. Duplessix, and C. Picot. 1987. Scattering function, of polystyrene. Macromolecules. 20:630-648.
52. Sharp, P., and V. A. Bloomfield. 1968. Light scattering from wormlike chains with excluded volume effects. Biopolymers. 6:1201-1211.
53. Pérez, J., P. Vachette, ...,D. Durand. 2001. Heat-induced unfolding of neocarzinostatin, a small all-β protein investigated by small-angle x-ray scattering. J. Mol. Biol. 308:721-743.
54. Gu, W., and V. Helms. 2005. Dynamical binding of proline-rich peptides to their recognition domains. Biochim. Biophys. Acta. 1754: 232-238.
55. Bánó, M., and J. Marek. 2006. How thick is the layer of thermal volume surrounding the protein? Biophys. Chem. 120:44-54.
56. Fisher, M. E., and R. J. Burford. 1967. Theory of critical-point scattering and correlations. I. The Ising model. Phys. Rev: 156:583-622.
57. Kallala, M., C. Sanchez, and B. Cabane. 1993. Structures of inorganic polymers in sol-gel processes based on titanium oxide. Phys. Rev: E Stat. Phys. Plasmas Fluids Relat Iterdiscip. Topics. 48:3692-3704.
58. Petoukhov, M. V., and D. I. Svergun. 2005. Global rigid body modeling of macromolecular complexes against small-angle scattering data, Biophys. J. 89:1237-1250.
59. Bernado, P., E. Mylonas, .... D. I. Svergun. 2007. Structural characterization of flexible proteins using small-angle x-ray scattering. J. Am. Chem. Soc. 129:5656-5664.
60. Maupetit, J., R. Gautier, and P. Tuffery. 2006. SABBAC: online Structural Alphabet-based protein BackBone reconstruction from AlphaCarbon trace. Nucleic Acids Res. 34(Web Server issue):W147-W51 (http://bioserv.rpbs.jussieu.fr/SA. BBAC.html).
61. Svergun, D., C. Barberato, and M. H. J. Koch. 1995. CRYSOLa program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates. J. Appl. Cryst. 28:768-773.