Molecular phylogenetics and taxonomic reassessment of four Indian representatives of the genus Nymphaea

Aquatic Botany

Volumn 93, Issue 2, 2010, Pages 135-139

  Dkhar, Jeremy ^a   Kumaria, Suman ^a   Rao, Satyawada Rama ^a   Tandon, Pramod ^a  

^a NORTH EASTERN HILL UNIVERSITY   (India)

Author keywords

Bayesian inference; ITS; MatK; Maximum parsimony; Phylogenetic relationship; Taxonomic revision; TrnK intron

Indexed keywords

AQUATIC PLANT; BAYESIAN ANALYSIS; GENETIC ANALYSIS; IDENTIFICATION METHOD; MOLECULAR ECOLOGY; PARSIMONY ANALYSIS; PHYLOGENETICS; TAXONOMY;

INDIA;

NYMPHAEA; NYMPHAEA CAPENSIS; NYMPHAEA LOTUS; NYMPHAEA NOUCHALI; NYMPHAEA TETRAGONA;

EID: 77954862716     PISSN: 03043770     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquabot.2010.03.010     Document Type: Article

References (41)

1. Aiton W.T. Hortus Kewensis; or a Catalogue of the Plants Cultivated in the Royal Botanic Gardens at Kew 1811, Longman, Hurst, Rees, Orme, and Brown, London. 2nd edition.
2. Borsch T., Hilu K.W., Wiersema J.H., Löhne C., Barthlott W., Wilde V. Phylogeny of Nymphaea (Nymphaeaceae): evidence from substitutions and microstructural changes in the chloroplast trnT-trnF region. Int. J. Plant Sci. 2007, 168:639-671.
3. Borsch T., Löhne C., Wiersema J. Phylogeny and evolutionary patterns in Nymphaeales: integrating genes, genomes and morphology. Taxon 2008, 57:1052-1081.
4. Caspary R. Nymphaeaceae. Ann. Mus. Bot. Lugduno-Batavi 1866, 2:241-256.
5. Chauhan A.S. Dwindling taxa of Meghalaya. An Assessment of Threatened Plants of India 1983, 142-145. Botanical Survey of India. S.K. Jain, R.R. Rao (Eds.).
6. Conard H.S. The Waterlilies: A Monograph of the Genus Nymphaea 1905, Lord Baltimore Press, Baltimore.
7. Cook C.D.K. Aquatic and Wetland Plants of India 1996, Oxford University Press, Oxford.
8. Doyle J.J., Doyle J.L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 1987, 19:11-15.
9. De Candolle A.P. Regni Vegetabilis Systema Naturalis. Paris 1821, vol. 2. p. 52.
10. De Candolle A.P. Prodromus Systematis Naturalis Regni Vegetabilis. Paris 1824, vol. 1. p. 115.
11. eFloras, 2008. Published on the Internet (accessed 16.03.10). Missouri Botanical Garden, St. Louis, MO and Harvard University Herbaria, Cambridge, MA. http://www.efloras.org/.
12. Felsentein J. Phylip-phylogeny inference package (version 3.2). Cladistics 1989, 5:164-166.
13. Goremykin V.V., Hirsch-Ernst K.I., Wolf S., Hellwig F.H. The chloroplast genome of Nymphaea alba: whole-genome analyses and the problem of identifying the most basal angiosperm. Mol. Biol. Evol. 2004, 21:1445-1454.
14. Hooker J.D., Thompson T. Flora Indica 1855, London.
15. Hooker J.D. Flora of British India. Ranunculaceae to Sapindaceae 1882, L. Reeve & Co., London.
16. Johnson L.A., Soltis D.E. Phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences. Ann. MO Bot. Gard. 1995, 82:149-175.
17. Les D.H., Schneider E.L., Padgett D.J., Soltis P.S., Soltis D.E., Zanis M. Phylogeny, classification and floral evolution of water lilies (Nymphaeaceae; Nymphaeales): a synthesis of non-molecular, rbcL, matK, and 18S rDNA data. Syst. Bot. 1999, 24:28-46.
18. Löhne C., Borsch T., Wiersema J.H. Phylogenetic analysis of Nymphaeales using fast-evolving and noncoding chloroplast markers. Bot. J. Linn. Soc. 2007, 154:141-163.
19. Löhne C., Borsch T., Jacobs S.W.L., Hellquist C.B., Wiersema J.H. Nuclear and plastid DNA sequences reveal complex reticulate patterns in Australian water-lilies (Nymphaea subgenus Anecphya, Nymphaeaceae). Aust. Syst. Bot. 2008, 21:229-250.
20. Mendonca F.A. Nymphaeaceae. Flora Zambesiaca 1960, 1:175-180.
21. Minder A.M., Rothenbuehler C., Widmer A. Genetic structure of hybrid zones between Silene latifolia and Silene dioica (Caryophyllaceae): evidence for introgressive hybridization. Mol. Ecol. 2007, 16:2504-2516.
22. Mitra R.L., Subramanyam K. Is Nymphaea rubra Roxb. Ex. Andrews an apomict?. Bull. Bot. Surv. India 1982, 24:83-86.
23. Mitra R.L. Nymphaeaceae. Fascicles of Flora of India, Fascicles 20 1990, 11-25. Botanical Survey of India. M.P. Nayar, K. Thothathri, M. Sanjappa (Eds.).
24. Müller K. SeqState: primer design and sequence statistics for phylogenetic DNA datasets. Appl. Bioinform. 2005, 4:65-69.
25. Page R.D. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 1996, 12:357-358.
26. Posada D. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
27. Prain D. Bengal Plants. vol. 1 1903, Calcutta.
28. Prain D. The vegetation of the districts of Hughli-Howrah and the 24-Pargunnahs. Rec. Bot. Surv. India 1905, 3:170.
29. Ronquist F., Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
30. Salisbury R.A. The Paradises Londinensis: or Coloured Figures of Plants Cultivated in the Vicinity of the Metropolis 1807, D.N. Shury, London.
31. Simmons M.P., Ochoterena H. Gaps as characters in sequence-based phylogenetic analyses. Syst. Biol. 2000, 49:369-381.
32. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
33. Thompson J.D., Gibson T.J., Plewniak F., Mongin F.J., Higgins D.G. Clustal X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
34. Tsukaya H., Fukuda T., Yokoyama J. Hybridization and introgression between Callicarpa japonica and C. mollis (Verbenaceae) in central Japan, as inferred from nuclear and chloroplast DNA sequences. Mol. Ecol. 2003, 12:3003-3012.
35. Van Droogenbroeck B., Kyndt T., Romeijn-Peeters E., Van Thuyne W., Goetghebeur P., Romero-Motochi J.P., Gheysen G. Evidence of natural hybridization and introgression between Vasconcellea species (Caricaceae) from southern Ecuador revealed by chloroplast, mitochondrial and nuclear DNA markers. Ann. Bot. 2006, 97:793-805.
36. Verdcourt B. Nymphaeaceae. Flora of Tropical East Africa 1989, 1-12. Balkema-Rotterdam. R.M. Polhill (Ed.).
37. Wang A., Yang M., Liu J. Molecular phylogeny, recent radiation and evolution of gross morphology of the Rhubarb genus Rheum (Polygonaceae) inferred from chloroplast DNA trnL-F sequences. Ann. Bot. 2005, 96:489-498.
38. White T.J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications 1990, 315-322. Academic Press, California. D.G.M. Innis, J. Sninsky, T. White (Eds.).
39. Wiersema J.H. Nymphaea tetragona and Nymphaea leibergii (Nymphaeaceae): two species of diminutive water-lilies in North America. Brittonia 1996, 48:520-531.
40. Wight R., Walker-Arnott G.A. Prodomus Florae Peninsulae Indiae Orientalis 1834, London.
41. Woods K., Hilu K.W., Borsch T., Wiersema J.H. Pattern of variation and systematics of Nymphaea odorata: II. Sequence information from ITS and trnL-trnF. Syst. Bot. 2005, 30:481-493.