Cloning and functional characterization of a peroxiredoxin 4 from yellowtail kingfish (Seriola lalandi)

Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology

Volumn 156, Issue 4, 2010, Pages 244-253

  Loo, Grace H ^a   Schuller, Kathryn A ^a  

^a FLINDERS UNIVERSITY   (Australia)

Author keywords

Peroxiredoxins; Prx 4 cDNA; Seriola lalandi

Indexed keywords

AMINO ACID; COMPLEMENTARY DNA; HYDROGEN PEROXIDE; HYDROPEROXIDE; PEROXIREDOXIN 4; TERT BUTYL HYDROPEROXIDE; THIOREDOXIN PEROXIDASE;

AMINO ACID SEQUENCE; ANIMAL CELL; ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME ASSAY; ENZYME MECHANISM; ESCHERICHIA COLI; FISH; KINETICS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROTEIN CLEAVAGE; PROTEIN EXPRESSION; PROTEIN FUNCTION; SERIOLA LALANDI;

MAMMALIA; SERIOLA LALANDI;

EID: 77954860077     PISSN: 10964959     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbpb.2010.03.013     Document Type: Article

References (45)

1. Akerman S.E., Müller S. 2-Cys peroxiredoxin PfTrx-Px1 is involved in the antioxidant defence of Plasmodium falciparum. Mol. Biochem. Parasitol. 2003, 130:75-81.
2. Aran M., Ferrero D.S., Pagano E., Wolosiuk R.A. Typical 2-Cys peroxiredoxins-modulation by covalent transformations and noncovalent interactions. FEBS J. 2009, 276:2478-2493.
3. Barranco-Medina S., Lázaro J.-J., Dietz K.-J. The oligomeric conformation of peroxiredoxins links redox state to function. FEBS Letts. 2009, 583:1809-1816.
4. Bendtsen J.D., Nielsen H., von Heijne G., Brunak S. Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 2004, 340:783-795.
5. Biteau B., Labarre J., Toledano M.B. ATP-dependent reduction of cysteine-sulphinic acid by S. cerevisiae sulphiredoxin. Nature 2003, 425:980-984.
6. Bradford M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein dye-binding. Anal. Biochem. 1976, 72:248-254.
7. Budde H., Flohé L., Hecht H.J., Hofmann B., Stehr M., Wissing J., Lunsdorf H. Kinetics and redox-sensitive oligomerisation reveal negative subunit cooperativity in tryparedoxin peroxidase of Trypanosoma brucei brucei. Biol. Chem. 2003, 384:619-633.
8. Cao Z., Bhella D., Lindsay J.G. Reconstitution of the mitochondrial PrxIII antioxidant defence pathway: general properties and factors affecting PrxIII activity and oligomeric state. J. Mol. Biol. 2007, 372:1022-1033.
9. Chae H.Z., Kim H.J., Kang S.W., Rhee S.G. Characterization of three isoforms of mammalian peroxiredoxin that reduce peroxides in the presence of thioredoxin. Diabetes Res. Clin. Pract. 1999, 45:101-112.
10. Chai X., Li X., Lu R., Clarke S. Karyotype analysis of yellowtail kingfish Seriola lalandi lalandi (Perciformes: Carangidae) from South Australia. Aquacult. Res. 2009, 40:1735-1741.
11. Chen Y., Zhang Y.X., Fan T.J., Meng L., Ren G., Chen S.L. Molecular identification and expression analysis of the natural killer cell enhancing factor (NKEF) gene from turbot (Scophthalmus maximus). Aquaculture 2006, 261:1186-1193.
12. Chen J., Wu H.Q., Niu H., Shi Y.H., Li M.Y. Increased liver protein and mRNA expression of natural killer cell-enhancing factor B (NKEF-B) in ayu (Plecoglossus altivelis) after Aeromonas hydrophila infection. Fish. Shellfish Immunol. 2009, 26:567-571.
13. Dalziel K. Initial steady state velocities in the evaluation of enzyme-coenzyme-substrate reaction mechanisms. Acta Chem. Scand. 1957, 11:1706-1723.
14. Dong W.R., Xiang L.X., Shao J.Z. Cloning and characterization of two natural killer enhancing factor genes (NKEF-A and NKEF-B) in pufferfish, Tetraodon nigroviridis. Fish. Shellfish Immunol. 2007, 22:1-5.
15. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
16. Fernandes M., Tanner J. Modelling of nitrogen loads from the farming of yellowtail kingfish Seriola lalandi (Valenciennes, 1833). Aquacult. Res. 2008, 39:1328-1338.
17. Hall A., Karplus P.A., Poole L.B. Typical 2-Cys peroxiredoxins-structures, mechanisms and functions. FEBS J. 2009, 276:2469-2477.
18. Hofmann B., Hecht H.J., Flohé L. Peroxiredoxins. Biol. Chem. 2002, 383:347-364.
19. Huang R., Gao L.-Y., Wang Y.-P., Hu W., Guo Q.-L. Structure, organization and expression of common carp (Cyprinus carpio L.) NKEF-B gene. Fish. Shelfish Immunol. 2009, 26:220-229.
20. Hutson K.S., Ernst I., Whittington I.D. Risk assessment for metazoan parasites of yellowtail kingfish Seriola lalandi (Perciformes: Carangidae) in South Australian sea-cage culture. Aquaculture 2007, 271:85-99.
21. Iuchi Y., Okada F., Tsunoda S., Kibe N., Shirasawa N., Ikawa M., Okabe M., Ikeda Y., Fujii J. Peroxiredoxin 4 knockout results in elevated spermatogenic cell death via oxidative stress. Biochem. J. 2009, 419:149-158.
22. Jönsson T.J., Johnson L.C., Lowther W.T. Structure of the sulphiredoxin-peroxiredoxin complex reveals an essential repair embrace. Nature 2008, 451:98-102.
23. König J., Fairlamb A.H. A comparative study of type I and type II tryparedoxin peroxidases in Leishmania major. FEBS J. 2007, 274:5643-5658.
24. König J., Lotte K., Plessow R., Brockhinke A., Baier M., Dietz K.J. Reaction mechanism of plant 2-Cys peroxiredoxin. Role of the C terminus and the quaternary structure. J. Biol. Chem. 2003, 278:24409-24420.
25. Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J., Higgins D.G. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
26. Li R.W., Waldbieser G.C. Genomic organization and expression of the natural killer cell enhancing factor (NKEF) gene in channel catfish, Ictalurus punctatus (Rafinesque). Fish. Shellfish Immunol. 2006, 20:72-82.
27. Matsumoto A., Okado A., Fujii T., Fujii J., Egashira M., Niikawa N., Taniguchi N. Cloning of the peroxiredoxin gene family in rats and characterization of the fourth member. FEBS Letts. 1999, 443:246-250.
28. Nielsen H., Krogh A. Prediction of signal peptides and signal anchors by a hidden Markov model. Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB 6) 1998, 122-130. AAAI Press, Menlo Park, California.
29. Okado-Matsumoto A., Matsumoto A., Fujii J., Taniguchi N. Peroxiredoxin IV is a secretable protein with heparin-binding properties under reduced conditions. J. Biochem. 2000, 127:493-501.
30. Rabilloud T., Heller M., Rigobello M.-P., Bindoli A., Aebersold R., Lundardi J. The mitochondrial antioxidant defence system and its response to oxidative stress. Proteomics 2001, 1:1105-1110.
31. Rahlfs S., Becker K. Thioredoxin peroxidases of the malarial parasite Plasmodium falciparum. Eur. J. Biochem. 2001, 268:1404-1409.
32. Rhee S.G., Chae H.Z., Kim K. Peroxiredoxins: a historical overview and speculative preview of novel mechanisms and emerging concepts in cell signalling. Free Radic. Biol. Med. 2005, 38:1543-1552.
33. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
34. Sasagawa I., Matsuki S., Suzuki Y., Iuchi Y., Tohya K., Kimura M., Nakada T., Fujii J. Possible involvement of the membrane-bound form of peroxiredoxin 4 in acrosome formation during spermiogenesis in rats. Eur. J. Biochem. 2001, 268:3053-3061.
35. Sayed A.A., Williams D.L. Biochemical characterization of 2-Cys peroxiredoxins from Schistosoma mansoni. J. Biol. Chem. 2004, 229:26159-26166.
36. Sekiya M., Mulcahy G., Irwin J.A., Stack C.M., Donnelly S.M., Xu W., Collins P., Dalton J.P. Biochemical characterisation of the recombinant peroxiredoxin (FhePrx) of the liver fluke, Fasciola hepatica. FEBS Letts. 2006, 580:5016-5022.
37. Shin D.H., Fujiki K., Nakao M., Yano T. Organisation of the NKEF gene and its expression in the common carp (Cyprinus carpio). Dev. Comp. Immunol. 2001, 25:597-606.
38. Sutton D.L., Loo G.H., Menz R.I., Schuller K.A. Cloning and functional characterization of a typical 2-Cys peroxiredoxin from southern bluefin tuna (Thunnus maccoyii). Comp. Biochem. Physiol. Part B 2010, 156:97-106.
39. Tamura K., Dudley J., Nei M., Kumar S. Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
40. Tavender T.J., Sheppard A.M., Bulleid N.J. Peroxiredoxin IV is an endoplasmic reticulum-localized enzyme forming oligomeric complexes in human cells. Biochem. J. 2008, 411:191-199.
41. Thompson J.L., Thomas P.M., Schuller K.A. Purification and properties of a glutathione peroxidase from southern bluefin tuna (Thunnus maccoyii) liver. Comp. Biochem. Physiol. Part B 2006, 144:86-93.
42. Woo H.A., Chae H.Z., Hwang S.C., Yang K.-S., Kang S.W., Kim K., Rhee S.G. Reversing the inactivation of peroxiredoxins caused by cysteine sulfinic acid formation. Science 2003, 300:653-656.
43. Wood Z.A., Poole L.B., Karplus P.A. Peroxiredoxin evolution and the regulation of hydrogen peroxide signaling. Science 2003, 300:650-653.
44. Zhang H., Evenhuis J.P., Thorgaard G.H., Ristow S.S. Cloning, characterisation and genomic structure of the natural killer cell enhancement factor (NKEF)-like gene from homozygous clones of rainbow trout (Oncorhynchus mykiss). Dev. Comp. Immunol. 2001, 25:25-35.
45. Zuckerkandl E., Pauling L. Evolutionary divergence and convergence in proteins. Evolving Genes and Proteins 1965, 97-166. Academic Press, New York. V. Bryson, H.J. Vogel (Eds.).