Proteome profiling reveals gender differences in the composition of human serum

Proteomics

Volumn 10, Issue 14, 2010, Pages 2678-2691

  Miike, Koichiro ^a   Aoki, Masashi ^a   Yamashita, Ryo ^a   Takegawa, Yumiko ^a   Saya, Hideyuki ^b   Miike, Teruhisa ^a   Yamamura, Ken Ichi ^a  

^a KUMAMOTO UNIVERSITY   (Japan)

^b KEIO UNIVERSITY   (Japan)

Author keywords

Gender difference; Proteome profiling; Serum; Technology

Indexed keywords

PROTEOME;

ADULT; ANALYTIC METHOD; ARTICLE; COLUMN CHROMATOGRAPHY; CONTROLLED STUDY; FEMALE; HUMAN; MALE; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BLOOD LEVEL; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; QUANTITATIVE ANALYSIS; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; SEX DIFFERENCE;

BLOOD PROTEINS; CHEMICAL FRACTIONATION; CHROMATOGRAPHY, ION EXCHANGE; CHROMATOGRAPHY, LIQUID; CHROMATOGRAPHY, REVERSE-PHASE; FEMALE; HUMANS; MALE; NANOTECHNOLOGY; PEPTIDES; PROTEOME; PROTEOMICS; REPRODUCIBILITY OF RESULTS; SERUM; SEX CHARACTERISTICS; SOFTWARE; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; YOUNG ADULT;

EID: 77954747211     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200900496     Document Type: Article

References (44)

1. Nowell, P. C., Hungerford, D. A., Chromosome studies on normal and leukemic human leukocytes. J. Natl. Cancer Inst. 1960, 25, 85-109.
2. Ben-Neriah, Y., Daley, G. Q., Mes-Masson, A. M., Witte, O. N., Baltimore, D. The chronic myelogenous leukemia-specific P210 protein is the product of the bcr/abl hybrid gene. Science 1986, 233, 212-214. (Pubitemid 16008117)
3. Yano, Y., Uematsu, N., Yashiro, T., Hara, H. et al., Gene expression profiling identifies platelet-derived growth factor as a diagnostic molecular marker for papillary thyroid carcinoma. Clin. Cancer Res. 2004, 10, 2035-2043.
4. Shen, Y., Tolic, N., Masselson, C., Pasa-Tolic, L. et al., Ultrasensitive proteomics using high-efficiency on-line micro-SPE-nanoLC-nanoESI MS and MS/MS. Anal. Chem. 2004, 76, 144-154.
5. Shen, Y., Strittmatter, E. F., Zhang, R., Metz, T. O., Making broad proteome protein measurements in 1-5 min using high-speed RPLC separations and high-accuracy mass measurements. Anal. Chem. 2005, 77, 7763-7773.
6. Shiio, Y., Aebersold, R., Quantitative proteome analysis using isotope-coded affinity tags and mass spectrometry. Nat. Protoc. 2006, 1, 139-145.
7. Soga, T., Baran, R., Suematsu, M., Ueno, Y. et al., Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption. J. Biol. Chem. 2006, 281, 16768-16776.
8. Ostermann, N., Eder, J., Edihoff, U., Zink, F. et al., Crystal structure of human BACE2 in complex with a hydroxyethylamine transition state inhibitor. J. Mol. Biol. 2006, 355, 249-261.
9. Searfoss, G. H., Jordan, W. H., Calligaro, D. O., Galbreath, E. J. et al., Adipsin, a biomarker of gastrointestinal toxicity mediated by a functional -secretase inhibitor. J. Biol. Chem. 2003, 278, 46107-46116.
10. Ehmann, M., Felix, K., Hartmann, D., Schnölzer, M. et al., Identification of potential markers for the detection of pancreatic cancer through comparative serum protein expression profiling. Pancreas 2007, 34, 205-214. (Pubitemid 46294796)
11. Han, K. Q., Huang, G., Gao, C. F., Wang, X. L. et al., Identification of lung cancer patients by serum protein profiling using surface-enhanced laser desorption/ionization time-of-flight mass spectrometry. Am. J. Clin. Oncol. 2008, 31, 133-139.
12. Slamon, D. J., Clark, G. M., Wong, S. G., Levin, W. J. et al., Human breast cancer: correlation of relapse and survival with amplification of the HER-2/neuoncogene. Science 1987, 235, 177-182. (Pubitemid 17231334)
13. Moasser, M. M., The oncogene HER2: its signaling and transforming functions and its role in human cancer pathogenesis. Oncogene 2007, 26, 6469-6487.
14. Yoshida, K., Yamaguchi, T., Natsume, T., Kufe, D., Miki, Y., JNK phosphorylation of 14-3-3 proteins regulates nuclear targeting of c-Abl in the apoptotic response to DNA damage. Nat. Cell Biol. 2005, 7, 278-285.
15. Borner, G. H., Harbour, M., Hester, S., Lilley, K. S., Robinson, M. S., Comparative proteomics of clathrin-coated vesicles. J. Cell Biol. 2006, 175, 571-578.
16. Melanson, J. E., Avery, S. L., Pinto, D. M., High-coverage quantitative proteomics using amine-specific isotopic labeling. Proteomics 2006, 6, 4466-4474.
17. Lund, T. C., Anderson, L. B., McCullar, V., Higgins, L. et al., iTRAQ is a useful method to screen for membrane-bound proteins differentially expressed in human natural killer cell types. J. Proteome Res. 2007, 6, 644-653. (Pubitemid 46340168)
18. Hu, J., Qian, J., Borisov, O., Pan, S. et al., Optimized proteomic analysis of a mouse model of cerebellar dysfunction using amine-specific isobaric tags. Proteomics 2006, 6, 4321-4334.
19. Nogales-Cadenas, R., Carmona-Saez, P., Vazquez, M., Vicente, C. et al., GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information. Nucleic Acids Res. 2009, 37 (suppl. 2), W317-W322.
20. Carmona-Saez, P., Chagoyen, M., Tirado, F., Carazo, J. M., Pascual-Montano, A., GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists. Genome Biol. 2007, 8, R3.
21. Shilov, I. V., Seymour, S. L., Patel, A. A., Loboda, A. et al., The paragon algorithm: a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra. Mol. Cell. Proteomics 2007, 6, 1638-1655.
22. Wood, L. D., Parsons, D. W., Jones, S., Lin, J. et al., The genomic landscapes of human breast and colorectal cancers. Science 2007, 318, 1108-1113. (Pubitemid 350134889)
23. Tanaka, Y., Akiyama, H., Kuroda, T., Jung, G. et al., A novel approach and protocol for discovering extremely low-abundance proteins in serum. Proteomics 2006, 6, 4845-4855.
24. Miguel, J. L., Agapito, M. T., Recio, J. M., Sex difference of hematological and biochemical parameters in healthy rainbow traout (Salmo gairdneri R). Rev. Esp. Fisiol. 1988, 44, 215-219.
25. Perretta, G., Violante, A., Scarpulla, M., Beciani, M., Monaco, V., Normal serum biochemical and hematological parameters in Macaca fascicularis. J. Med. Primatol. 1991, 20, 345-351.
26. Goodrich, J. A., Ward, G. S., Swindle, M. M., Normal serum biochemical and hematological values of the Sulawesi macaques. J. Med. Primatol. 1995, 24, 17-28.
27. Ihrig, M., Tassinary, L. G., Bernacky, B., Keeling, M. E., Hematologic and serum biochemical reference intervals for the chimpanzee (Pan troglodytes) categorized by age and sex. Comp. Med. 2001, 51, 30-37.
28. Yeung, D. C., Xu, A., Cheung, C. W., Wat, N. M. et al., Serum adipocyte fatty acid-binding protein levels were independently associated with carotid atherosclerosis. Arterioscler. Thromb. Vasc. Biol. 2007, 27, 1796-1802.
29. Ahonen, T. M., Kautiainen, H. J., Keinänen-Kiukaanniemi, S. M., Kumpusalo, E. A., Vanhala, M. J., Gender difference among smoking, adiponectin, and high-sennsitivity C-reactive protein. Am. J. Prev. Med. 2008, 35, 598-601.
30. Lussier-Cacan, S., Xhignesse, M., Piolot, A., Selhub, J. et al., Plasma total homocysteine in healthy subjects: sex-specific relation with biological traits.Am. J. Clin. Nutr. 1996, 64, 641-642.
31. Ardawi, M. S., Rouzi, A. A., Qari, M. H., Dahlawi, F. M., Ai-Raddadi, R. M., Influence of age, sex, folate and vitamin b 12 status on plasma homocystein in Saudis. Saudi Med. J. 2002, 23, 959-968.
32. Frantz, A. G., Rabkin, M. T., Effect of estrogen ans sex difference on secretion of human growth hormone. J. Clin. Endocrinol. Metab. 1965, 25, 1470-1480.
33. Merimee, T. J., Fineberg, S. E., Studies on the sex-based variation of human growth hormone secretion. J. Clin. Endocrinol. Metab. 1971, 33, 896-902.
34. Burman, P., Johansson, A. G., Siegbahn, A., Vessby, B., Karisson, F. A., Growth hormone (GH)-deficienct men more responsive to GH replacement therapy than women. J. Clin. Endocrinol. Metab. 1997, 82, 3514-3515.
35. Johansson, A. G., Gender difference in growth hormone response in adults. J. Endocrinol. Invest. 1999, 22, 58-60.
36. Chou, P., Lin, K. C., Lin, H. Y., Tsai, S. T., Gender differences in the relationships of serum uric acid with fasting serum insulin and plasma glucose in patients witout diabetes. J. Rheumatol. 2001, 28, 571-576. (Pubitemid 32202662)
37. Vaidyanathan, G., Cismowski, M. J., Wang, G., Vincent, T. S. et al., The Ras-related protein AGS1/RASD1 suppresses cell growth. Oncogene 2004, 23, 5858-5863. (Pubitemid 39093032)
38. Wu, L., Kobayashi, K., Sun, T., Gao, P. et al., Cloning and functional characterization of the murine mastermind-like 1 (Maml1) gene. Gene 2004, 328, 153-165. (Pubitemid 38352892)
39. Tonon, G., Modi, S., Wu, L., Kubo, A. et al., t(11;19)(q21;p13) translocation in mucoepidermoid carcinoma creates a novel fusion product that disrupts a Notch signaling pathway. Nat. Genet. 2003, 33, 208-213.
40. Letessier, A., Garrido-Urbani, S., Ginestier, C., Fournier, G. et al., Correlate break a PARK2/FRA6E and loss of AF-6/Afadin protein expression are associated with poor outcome in breast cancer. Oncogene 2007, 26, 298-307.
41. Gatalica, Z., Lele, S. M., Rampy, B. A., Norris, B. A., The expression of Fhit protein is related inversely to disease progression in patients with breast carcinoma. Cancer 2000, 88, 1375-1383.
42. Tomosugi, N., Nitagawa, K., Takahashi, N., Ishikawa, I., Diagnostic potential of tear proteomic patterns in Sjogren's syndrome. J. Proteome Res. 2005, 4, 820-825. (Pubitemid 40863270)
43. Hu, S., Wang, J., Meijer, J., Ieong, S. et al., Salivary proteomic and genomic biomarkers for primary Sjogren syndrome. Arthritis Rheum. 2007, 56, 3588-3600. (Pubitemid 350100692)
44. Lukacs, J. R., Largaespada, L. L., Explaining sex differences in dental caries prevalence: saliva, hormones, and "life-history" etiologies. Am. J. Hum. Biol. 2006, 18, 540-555.