Multiple periglacial refugia in the Patagonian steppe and post-glacial colonization of the Andes: The phylogeography of Calceolaria polyrhiza

Journal of Biogeography

Volumn 37, Issue 8, 2010, Pages 1463-1477

  Cosacov, Andrea ^a   Sérsic, Alicia N ^a   Sosa, Victoria ^b   Johnson, Leigh A ^c   Cocucci, Andrea A ^a  

^a UNIVERSIDAD NACIONAL DE CÓRDOBA   (Argentina)

^b INSTITUTO DE ECOLOGÍA   (Mexico)

^c BRIGHAM YOUNG UNIVERSITY   (United States)

Author keywords

Arid Diagonal zone; Demographic expansion; Herbaceous plant; Patagonia; Pleistocene glaciations; Secondary contact zone; South America; Volcanism

Indexed keywords

ARID REGION; CHLOROPLAST; COLONIZATION; DICOTYLEDON; DIVERGENCE; ENDEMIC SPECIES; GENE EXPRESSION; GENEALOGY; GENETIC VARIATION; GENOTYPE; GLACIER RETREAT; PERIGLACIAL ENVIRONMENT; PHYLOGENETICS; PHYLOGEOGRAPHY; PLEISTOCENE; RAINFOREST; REFUGIUM; STEPPE; SURVIVAL; VOLCANISM;

ANDES; PATAGONIA;

CALCEOLARIA POLYRHIZA; NOTHOFAGUS;

EID: 77954742048     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2010.02307.x     Document Type: Article

References (73)

1. Acosta MC, Premoli AC. Evidence of chloroplast capture in South American Nothofagus (subgenus Nothofagus, Nothofagaceae). Molecular Phylogenetics and Evolution 2010, 54:235-242.
2. Alsos IG, Engelskjøn T, Gielly L, Taberlet P, Brochmann C. Impact of ice ages on circumpolar molecular diversity: insights from an ecological key species. Molecular Ecology 2005, 14:2739-2753.
3. Ávila LJ, Morando M, Sites JW. Congeneric phylogeography: hypothesizing species limits and evolutionary processes in Patagonian lizards of the Liolaemus boulengeri group (Squamata: Liolaemini). Biological Journal of the Linnean Society 2006, 89:241-275.
4. Avise JC. Phylogeography: the history and formation of species 2000, Harvard University Press, Cambridge, MA
5. Azpilicueta MM, Marchelli P, Gallo LA. The effects of Quaternary glaciations in Patagonia as evidenced by chloroplast DNA phylogeography of Southern beech Nothofagus obliqua. Tree Genetics and Genomes 2009, 5:561-571.
6. Barreda V, Guler V, Palazzesi L. Late Miocene continental and marine palynological assemblages from Patagonia. The late Cenozoic of Patagonia and Tierra del Fuego 2008, 343-349. Rabassa J, ed. by, Elsevier, Oxford
7. Beheregaray LB. Twenty years of phylogeography: the state of the field and the challenges for the Southern Hemisphere. Molecular Ecology 2008, 17:3754-3774.
8. Clement M, Posada D, Crandall KA. TCS: a computer program to estimate gene genealogies. Molecular Ecology 2000, 9:1657-1659.
9. Crandall KA, Templeton AR. Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics 1993, 134:959-969.
10. Cullings KW. Design and testing of a plant specific PCR primer for ecological and evolutionary studies. Molecular Ecology 1992, 1:233-240.
11. Cussac VE, Ortubay S, Iglesias G, Milano D, Lattuca ME, Barriga JP, Battini M, Gross M. The distribution of South American galaxiid fishes: the role of biological traits and post-glacial history. Journal of Biogeography 2004, 31:103-121.
12. Datson PM, Murray BG, Steiner KE. Climate and the evolution of annual/perennial life-histories in Nemesia (Scrophulariaceae). Plant Systematics and Evolution 2008, 270:39-57.
13. Donoso ZC. Bosques templados de Chile y Argentina. Variación, estructura y dinámica. Ecología forestal 1993, Editorial Universitaria, Santiago de Chile
14. Excoffier L. Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model. Molecular Ecology 2004, 13:853-864.
15. Excoffier L, Laval G, Schneider S. Arlequin version 3.01: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 2005, 1:47-60.
16. Fernández RJ, Golluscio RA, Bisigato AJ, Soriano A. Gap colonization in the Patagonian semidesert: seed bank and diaspore morphology. Ecography 2002, 25:336-344.
17. Fu YX. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 1997, 147:915-925.
18. Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 2003, 52:696-704.
19. Guindon S, Lethiec F, Duroux P, Gascuel O. PHYML online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Research 2005, 33:W557-W559.
20. Hernández MA, González N, Hernández L. Late Cenozoic geohydrology of extra-Andean Patagonia, Argentina. The late Cenozoic of Patagonia and Tierra del Fuego 2008, 497-509. Rabassa J, ed. by, Elsevier, Oxford
21. Heusser CJ. Quaternary vegetation of southern South America. Quaternary South America and Antarctic Peninsula 1987, 5:197-221.
22. Hewitt GM. Some genetic consequences of ice ages, and their role in divergence and speciation. Biological Journal of the Linnean Society 1996, 58:247-276.
23. Hewitt GM. The genetic legacy of the Quaternary ice ages. Nature 2000, 405:907-913.
24. Hewitt GM. Genetic consequences of climatic oscillations in the Quaternary. Proceedings of the Royal Society B: Biological Sciences 2004, 359:183-195.
25. Himes CMT, Gallardo MH, Kenagy GJ. Historical biogeography and post-glacial recolonization of South American temperate rain forest by the relictual marsupial Dromiciops gliroides. Journal of Biogeography 2008, 35:1415-1424.
26. Holderegger R, Thiel-Egenter C. A discussion of different types of glacial refugia used in mountain biogeography and phylogeography. Journal of Biogeography 2009, 36:476-480.
27. Huck S, Burkhard B, Kadereit JW, Printzen C. Range-wide phylogeography of the European temperate-montane herbaceous plant Meum athamanticum Jacq: evidence for periglacial persistence. Journal of Biogeography 2009, 36:1588-1599.
28. Huelsenbeck JP, Ronquist F. MrBayes: Bayesian inference of phylogeny. Bioinformatics 2001, 17:754-755.
29. Jakob SS, Martinez-Meyer E, Blattner FR. Phylogeographic analyses and paleodistribution modeling indicate Pleistocene in situ survival of Hordeum species (Poaceae) in southern Patagonia without genetic or spatial restriction. Molecular Biology and Evolution 2009, 26:907-923.
30. Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 2002, 30:3059-3066.
31. Kim I, Phillips CJ, Monjeau JA, Birney EC, Noack K, Pumo DE, Sikes RS, Dole JA. Habitat islands, genetic diversity, and gene flow in a Patagonian rodent. Molecular Ecology 1998, 7:667-678.
32. Kumar S, Tamura K, Nei M. MEGA3: integrated software for molecular evolutionary analysis and sequence alignment. Briefings in Bioinformatics 2004, 5:150-163.
33. Lourens L, Hilgen F, Shackleton NJ, Laskar J, Wilson D. The Neogene Period. A geologic time scale 2004, 409-440. Gradstein FM, Ogg JG, Smith AG, ed. by, Cambridge University Press, Cambridge
34. Mancini MV, Paez MM, Prieto AR, Stutz S, Tonello M, Vilanova I. Mid-Holocene climatic variability reconstruction from pollen records (32-52°S, Argentina). Quaternary International 2005, 132:47-59.
35. Marchelli P, Gallo LA. The combined role of glaciation and hybridization in shaping the distribution of genetic variation in a Patagonian southern beech. Journal of Biogeography 2004, 31:451-460.
36. Marchelli P, Gallo LA. Multiple ice-age refugia in a southern beech of South America as evidenced by chloroplast DNA markers. Conservation Genetics 2006, 7:591-603.
37. Markgraf V. Late and postglacial vegetational and paleoclimatic changes in subantarctic, temperate, and arid environments in Argentina. Palynology 1983, 7:43-70.
38. Martínez OA, Coronato AMJ. The Late Cenozoic fiuvial deposits of Argentine Patagonia. The late Cenozoic of Patagonia and Tierra del Fuego 2008, 205-226. Rabassa J, ed. by, Elsevier, Oxford
39. McCulloch RD, Bentley MJ, Purves RS, Hulton NRJ, Sugden DE, Clapperton CM. Climatic inferences from glacial and palaeoecological evidence at the last glacial termination, southern South America. Journal of Quaternary Science 2000, 15:409-417.
40. Molau U. Scrophulariaceae-Part I. Calceolarieae. Flora Neotropica 1988, 47:1-326.
41. Morando M, Ávila LJ, Baker J, Sites JW. Phylogeny and phylogeography of the Liolaemus darwinii complex (Squamata: Liolaemidae): evidence for introgression and incomplete lineage sorting. Evolution 2004, 58:842-861.
42. Morando M, Ávila LJ, Turner CR, Sites JW. Molecular evidence for a species complex in the Patagonian lizard Liolaemus bibronii and phylogeography of the closely related Liolaemus gracilis (Squamata: Liolaemini). Molecular Phylogenetics and Evolution 2007, 43:952-973.
43. Mraz P, Gaudeul M, Rioux D, Gielly L, Choler P, Taberlet P. Genetic structure of Hypochaeris uniflora (Asteraceae) suggests vicariance in the Carpathians and rapid post-glacial colonization of the Alps from an eastern Alpine refugium. Journal of Biogeography 2007, 34:2100-2114.
44. Muellner AN, Tremetsberger K, Stuessy T, Baeza CM. Pleistocene refugia and recolonization routes in the southern Andes: insights from Hypochaeris palustris (Astraceae, Lactuceae). Molecular Ecology 2005, 14:203-212.
45. Nei M. Molecular evolutionary genetics 1987, Columbia University Press, New York
46. Panchal M. The automation of nested clade phylogeographic analysis. Bioinformatics 2007, 23:509-510.
47. Pastorino MJ, Gallo LA. Quaternary evolutionary history of Austrocedrus chilensis, a cypress native to the Andean-Patagonian forest. Journal of Biogeography 2002, 29:1167-1178.
48. Petit RJ, Brewer S, Bordács S. Identification of refugia and post-glacial colonization routes of European white oaks based on chloroplast DNA and fossil pollen evidence. Forest Ecology and Management 2002, 159:49-74.
49. Pfenninger M, Posada D. Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): fragmentation, corridor migration, and secondary contact. Evolution 2002, 56:1776-1788.
50. Pinceel J, Jordaens K, Pfenninger M, Backeljau T. Rangewide phylogeography of a terrestrial slug in Europe: evidence for Alpine refugia and rapid colonization after the Pleistocene glaciations. Molecular Ecology 2005, 14:1133-1150.
51. Posada D, Crandall KA, Templeton AR. GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology 2000, 9:487-488.
52. Premoli AC, Kitzberger T, Veblen TT. Isozyme variation and recent biogeographical history of the long-lived conifer Fitzroya cupressoides. Journal of Biogeography 2000, 27:251-260.
53. Rabassa J. Late Cenozoic glaciations in Patagonia and Tierra del Fuego. The late Cenozoic of Patagonia and Tierra del Fuego 2008, 151-204. Rabassa J. ed. by, Elsevier, Oxford
54. Ramos VA, Ghiglione J. Tectonic evolution of the Patagonian Andes. The late Cenozoic of Patagonia and Tierra del Fuego 2008, 57-71. Rabassa J, ed. by, Elsevier, Oxford
55. Ramos VA, Kay SM. Overview of the tectonic evolution of the southern Central Andes of Mendoza and Neuquén (35°-39°S latitude). Geological Society of America, Special Paper 2006, 407:1-18.
56. Rogers AR, Harpending H. Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution 1992, 9:552-569.
57. Ronikier M, Costa A, Fuertes Aguilar J, Nieto Feliner G, Küpfer F, Mirek Z. Phylogeography of Pulsatilla vernalis (L.) Mill. (Ranunculaceae): chloroplast DNA reveals two evolutionary lineages across central Europe and Scandinavia. Journal of Biogeography 2008, 35:1650-1664.
58. Ruzzante DE, Walde SJ, Cussac VE, Dalebout ML, Seibert J, Ortubay S, Habit E. Phylogeography of the Percichthyidae (Pisces) in Patagonia: roles of orogeny, glaciations, and volcanism. Molecular Ecology 2006, 15:2949-2968.
59. Sérsic AN. Reproductive biology of the genus Calceolaria. Stapfia 2004, 82:1-121.
60. Shaw J, Lickey EB, Beck JT, Farmer SB, Liu WS, Miller J, Siripun KC, Winder CT, Schilling EE, Small RL. The tortoise and the hare. II: Relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American Journal of Botany 2005, 92:142-166.
61. Simmons MP, Ochoterena H. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 2000, 49:369-381.
62. Taberlet P, Cheddadi R. Quaternary refugia and persistence of biodiversity. Science 2002, 297:2009-2010.
63. Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF. Comparative phylogeography and post-glacial colonization routes in Europe. Molecular Ecology 1998, 7:453-464.
64. Tajima F. Evolutionary relationship of DNA sequences in finite populations. Genetics 1983, 105:437-460.
65. Tajima F. The effect of change in population size on DNA polymorphism. Genetics 1989, 123:598-601.
66. Tatur A, del Valle R, Bianchi MM, Outes V, Villarosa G, Niegodzisz J, Debaene G. Late Pleistocene palaeolakes in the Andean and Extra-Andean Patagonia at midlatitudes of South America. Quaternary International 2002, 89:135-150.
67. Templeton AR. Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology 1998, 7:381-397.
68. Templeton AR. Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology 2004, 13:789-809.
69. Templeton AR, Sing CF. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics 1993, 134:659-669.
70. Templeton AR, Boerwinkle E, Sing CF. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. 1. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics 1987, 117:343-351.
71. Templeton AR, Routman E, Phillips CA. Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 1995, 140:767-782.
72. del Valle RA, Tatur A, Rinaldi CA. Cambios en lagos y circulación fluvial vinculados al calentamiento climático del Pleistoceno tardío-Holoceno temprano en Patagonia e isla 25 de mayo, islas Shetland del Sur, Antártida. Revista de la Asociación Geológica Argentina 2007, 62:618-626.
73. Xu JW, Pérez-Losada M, Jara CG, Crandall KA. Pleistocene glaciation leaves deep signature on the freshwater crab Aegla alacalufi in Chilean Patagonia. Molecular Ecology 2009, 18:904-918.