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Volumn 309, Issue 2, 2010, Pages 136-143

New plasmids and putative virulence factors from the draft genome of an Australian clinical isolate of Photorhabdus asymbiotica

Author keywords

454 pyrosequencing; bioinformatics; de novo sequence assembly; genome sequencing; Illumina; Photorhabdus asymbiotica

Indexed keywords

VIRULENCE FACTOR;

EID: 77954708208     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2010.02030.x     Document Type: Article
Times cited : (24)

References (28)
  • 3
    • 62449271421 scopus 로고    scopus 로고
    • The emerging human pathogen Photorhabdus asymbiotica is a facultative intracellular bacterium and induces apoptosis of macrophage-like cells
    • Costa SC, Girard PA, Brehélin M Zumbihl R (2009) The emerging human pathogen Photorhabdus asymbiotica is a facultative intracellular bacterium and induces apoptosis of macrophage-like cells. Infect Immun 77 : 1022 1030.
    • (2009) Infect Immun , vol.77 , pp. 1022-1030
    • Costa, S.C.1    Girard, P.A.2    Brehélin, M.3    Zumbihl, R.4
  • 4
    • 47549106865 scopus 로고    scopus 로고
    • Infection-associated type IV secretion systems of Bartonella and their diverse roles in host cell interaction
    • Dehio C (2008) Infection-associated type IV secretion systems of Bartonella and their diverse roles in host cell interaction. Cell Microbiol 10 : 1591 1598.
    • (2008) Cell Microbiol , vol.10 , pp. 1591-1598
    • Dehio, C.1
  • 6
    • 46049115269 scopus 로고    scopus 로고
    • VirB3 to VirB6 and VirB8 to VirB11, but not VirB7, are essential for mediating persistence of Brucella in the reticuloendothelial system
    • den Hartigh AB, Rolan HG, de Jong MF Tsolis RM (2008) VirB3 to VirB6 and VirB8 to VirB11, but not VirB7, are essential for mediating persistence of Brucella in the reticuloendothelial system. J Bacteriol 190 : 4427 4436.
    • (2008) J Bacteriol , vol.190 , pp. 4427-4436
    • Den Hartigh, A.B.1    Rolan, H.G.2    De Jong, M.F.3    Tsolis, R.M.4
  • 10
    • 0029980553 scopus 로고    scopus 로고
    • Molecular biology of the symbiotic-pathogenic bacteria Xenorhabdus spp. and Photorhabdus spp
    • Forst S Nealson K (1996) Molecular biology of the symbiotic-pathogenic bacteria Xenorhabdus spp. and Photorhabdus spp. Microbiol Rev 60 : 21 43.
    • (1996) Microbiol Rev , vol.60 , pp. 21-43
    • Forst, S.1    Nealson, K.2
  • 11
    • 1442299321 scopus 로고    scopus 로고
    • Human infection with Photorhabdus asymbiotica: An emerging bacterial pathogen
    • Gerrard J, Waterfield N, Vohra R ffrench-Constant R (2004) Human infection with Photorhabdus asymbiotica: an emerging bacterial pathogen. Microbes Infection 6 : 229 237.
    • (2004) Microbes Infection , vol.6 , pp. 229-237
    • Gerrard, J.1    Waterfield, N.2    Vohra, R.3    Ffrench-Constant, R.4
  • 14
    • 42149162147 scopus 로고    scopus 로고
    • The genome BLASTatlas - A GeneWiz extension for visualization of whole-genome homology
    • Hallin PF, Binnewies TT Ussery DW (2008) The genome BLASTatlas - a GeneWiz extension for visualization of whole-genome homology. Mol Biosyst 4 : 363 371.
    • (2008) Mol Biosyst , vol.4 , pp. 363-371
    • Hallin, P.F.1    Binnewies, T.T.2    Ussery, D.W.3
  • 16
    • 0030854739 scopus 로고    scopus 로고
    • Trnascan-se: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM Eddy SR (1997) trnascan-se: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25 : 955 964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 17
    • 33750420023 scopus 로고    scopus 로고
    • The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria
    • Makarova KS, Grishin NV Koonin EV (2006) The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria. Bioinformatics 22 : 2581 2584.
    • (2006) Bioinformatics , vol.22 , pp. 2581-2584
    • Makarova, K.S.1    Grishin, N.V.2    Koonin, E.V.3
  • 18
    • 59949090259 scopus 로고    scopus 로고
    • De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. Oryzae
    • Reinhardt JA, Baltrus DA, Nishimura MT, Jeck WR, Jones CD Dangl JL (2009) De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. Oryzae. Genome Res 19 : 294 305.
    • (2009) Genome Res , vol.19 , pp. 294-305
    • Reinhardt, J.A.1    Baltrus, D.A.2    Nishimura, M.T.3    Jeck, W.R.4    Jones, C.D.5    Dangl, J.L.6
  • 19
    • 43149094164 scopus 로고    scopus 로고
    • Pfam 10 years on: 10,000 families and still growing
    • Sammut SJ, Finn RD Bateman A (2008) Pfam 10 years on: 10,000 families and still growing. Brief Bioinform 9 : 210 219.
    • (2008) Brief Bioinform , vol.9 , pp. 210-219
    • Sammut, S.J.1    Finn, R.D.2    Bateman, A.3
  • 21
    • 5444264410 scopus 로고    scopus 로고
    • Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans
    • Song Y, Zongzhong T, Jin W et al 2004) Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans. DNA Res 11 : 153 171.
    • (2004) DNA Res , vol.11 , pp. 153-171
    • Song, Y.1    Zongzhong, T.2    Jin, W.3
  • 22
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov RL, Koonin EV Lipman DJ (1997) A genomic perspective on protein families. Science 278 : 631 637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 25
    • 15744400973 scopus 로고    scopus 로고
    • The Photorhabdus Pir toxins are similar to a developmentally regulated insect protein but show no juvenile hormone esterase activity
    • Waterfield NR, Kamita SG, Hammock BD ffrench-Constant R (2005) The Photorhabdus Pir toxins are similar to a developmentally regulated insect protein but show no juvenile hormone esterase activity. FEMS Microbiol Lett 245 : 47 52.
    • (2005) FEMS Microbiol Lett , vol.245 , pp. 47-52
    • Waterfield, N.R.1    Kamita, S.G.2    Hammock, B.D.3    Ffrench-Constant, R.4
  • 26
    • 68349096343 scopus 로고    scopus 로고
    • Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens
    • Wilkinson P, Waterfield NR, Crossman L et al 2009) Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens. BMC Genomics 10 : 302.
    • (2009) BMC Genomics , vol.10 , pp. 302
    • Wilkinson, P.1    Waterfield, N.R.2    Crossman, L.3
  • 27
    • 33644865190 scopus 로고    scopus 로고
    • Photorhabdus virulence cassettes confer injectable insecticidal activity against the wax moth
    • Yang G, Dowling AJ, Gerike U, ffrench-Constant RH Waterfield NR (2006) Photorhabdus virulence cassettes confer injectable insecticidal activity against the wax moth. J Bacteriol 188 : 2254 2261.
    • (2006) J Bacteriol , vol.188 , pp. 2254-2261
    • Yang, G.1    Dowling, A.J.2    Gerike, U.3    Ffrench-Constant, R.H.4    Waterfield, N.R.5
  • 28
    • 0030770619 scopus 로고    scopus 로고
    • The relaxosome protein MobC promotes conjugal plasmid mobilization by extending DNA strand separation to the nick site at the origin of transfer
    • Zhang S Meyer R (1997) The relaxosome protein MobC promotes conjugal plasmid mobilization by extending DNA strand separation to the nick site at the origin of transfer. Mol Microbiol 25 : 509 516.
    • (1997) Mol Microbiol , vol.25 , pp. 509-516
    • Zhang, S.1    Meyer, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.