The hormone-sensitive lipase from Psychrobacter sp. TA144: New insight in the structural/functional characterization

Biochimie

Volumn 92, Issue 8, 2010, Pages 949-957

  De Santi, Concetta ^a   Tutino, Maria Luisa ^b   Mandrich, Luigi ^a   Giuliani, Maria ^b   Parrilli, Ermenegilda ^b   Del Vecchio, Pompea ^b   de Pascale, Donatella ^a  

^a INSTITUTE OF PROTEIN BIOCHEMISTRY   (Italy)

^b UNIVERSITY OF NAPLES FEDERICO II   (Italy)

Author keywords

hydrolase fold; Cold active enzymes; Ester synthesis; Esterases; Lipases; Psychrophilic micro organisms

Indexed keywords

ACETONITRILE; BACTERIAL ENZYME; CARBON; COPPER; ESTER; FATTY ACID; GENOMIC DNA; HORMONE SENSITIVE LIPASE; IRON; MANGANESE; MERCURY; METHANOL; PSYCHROBACTER HORMONE SENSITIVE LIPASE; RECOMBINANT PROTEIN; SEA WATER; UNCLASSIFIED DRUG; VALERIC ACID; ZINC;

AMINO TERMINAL SEQUENCE; ARTICLE; CHEMICAL ANALYSIS; DNA ISOLATION; DNA PURIFICATION; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME DEGRADATION; ENZYME INHIBITION; ENZYME KINETICS; ENZYME PURIFICATION; ENZYME SPECIFICITY; ENZYME STRUCTURE; ESCHERICHIA COLI; GENE DELETION; NONHUMAN; PH; PROTEIN DOMAIN; PSYCHROBACTER; PSYCHROPHILIC BACTERIUM; SEQUENCE HOMOLOGY; TEMPERATURE DEPENDENCE; TEMPERATURE SENSITIVITY; THERMOSTABILITY;

AMINO ACID SEQUENCE; BASE SEQUENCE; CATALYTIC DOMAIN; DNA PRIMERS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; GENES, BACTERIAL; HYDROGEN-ION CONCENTRATION; KINETICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; PSYCHROBACTER; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; STEROL ESTERASE;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; PSYCHROBACTER SP.;

EID: 77954658506     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2010.04.001     Document Type: Article

References (31)

1. D'Amico S., Collins T., Marx J.C., Feller G., Gerday C. Psychrophilic microorganisms: challenges for life. EMBO Reports 2006, 7:385-389.
2. De Simone G., Menchise V., Alterio V., Mandrich L., Rossi M., Manco G., Pedone C. The crystal structure of an EST2 mutant unveils structural insights on the H group of the carboxylesterase/lipase family. Journal Molecular Biology 2004, 343:137-146.
3. Cousin X., Hotelier T., Gliles K., Toutant J.P., Chatonnet A. aCHEdb: the database system for ESTHER, the alpha/beta fold family of proteins and the Cholinesterase gene server. Nucleic Acids Research 1998, 26:226-228.
4. De Simone G., Menchise V., Manco G., Mandrich L., Sorrentino N., Lang D., Rossi M., Pedone C. The crystal structure of a hyper-thermophilic carboxylesterase from the archaeon Archaeoglobus fulgidus. Journal Molecular Biology 2001, 314:507-518.
5. Osterlund T. Structure-function relationships of hormone-sensitive lipase. European Journal of Biochemistry 2001, 268:1899-1907.
6. Langin D., Laurell H., Holst L.S., Belfrage P., Holm C. Gene organization and primary structure of human hormone-sensitive lipase: possible significance of a sequence homology with a lipase of Moraxella TA144, an Antarctic bacterium. Proceeding National Academy Science U.S.A. 1993, 90:4897-4901.
7. Arpigny J.L., Jaeger K.E. Bacterial lipolytic enzymes: classification and properties. Biochemical Journal 1999, 343:177-183.
8. Hotelier T., Renault L., Cousin X., Negre V., Marchot P., Chatonnet A. ESTHER, the database of the alpha/beta-hydrolase fold superfamily of proteins. Nucleic Acids Research 2004, 32(database issue):D145-D147.
9. Carr P.D., Ollis D.L. Alpha/beta hydrolase fold; an update. Protein Peptide Letters 2009, 16:1137-1148.
10. Yeaman S.J. Hormone-sensitive lipase-new roles for an old enzyme. Biochemical Journal 2004, 379:11-22.
11. Kraemer F.B., Shen W.J. Hormone-sensitive lipase: control of intracellular tri- (di-) acylglycerol and cholesteryl ester hydrolysis. Journal Lipid Research 2002, 43:1585-1594.
12. Arner P., Langin D. The role of neutral lipases in human adipose tissue lipolysis. Current Opinion Lipidology 2007, 18:246-250.
13. Feller G., Thiry M., Arpigny J.L., Mergeay M., Gerday C. Lipases from psychrotrophic Antarctic bacteria. FEMS Microbiology Letters 1990, 66:239-244.
14. Sambrook J., Russell D.W. Molecular Cloning: a Laboratory Manual 2001, Cold Spring Harbor Laboratory Press, Cold Spring Harbor. third ed.
15. Merone L., Mandrich L., Rossi M., Manco G. A thermostable phosphotriesterase from the archaeon Sulfolobus solfataricus: cloning, overexpression and properties. Extremophiles 2005, 9:297-305.
16. Mandrich L., Merone L., Pezzullo M., Cipolla L., Nicotra F., Rossi M., Manco G. Role of the N-terminus in enzyme activity, stability and specificity in thermophilic esterases belonging to the HSL family. Journal Molecular Biology 2005, 345:501-512.
17. Chahinian H., Ali Y.B., Abousalham A., Petry S., Mandrich L., Manco G., Canaan S., Sarda L. Substrate specificity and kinetic properties of enzymes belonging to the hormone-sensitive lipase family: comparison with non-lipolytic and lipolytic carboxylesterases. Biochemical Biophysical Acta 2005, 1738:29-36.
18. Uren J.R. Cystathionine beta-lyase from Escherichia coli. Methods Enzymology 1987, 143:483-486.
19. Henikoff S., Henikoff J.G. Amino acid substitution matrices from protein blocks. Proceeding National Academy Science U.S.A. 1992, 89:10915-10919.
20. Zhu X., Larsen N.A., Basran A., Bruce N.C., Wilson I.A. Observation of an arsenic adduct in an acetyl esterase crystal structure. Journal of Biological Chemistry 2003, 278:2008-2014.
21. Marti-Renom M.A., Stuart A., Fiser A., Sánchez R., Melo F., Sali A. Comparative protein structure modeling of genes and genomes. Annual Review Biophysical Biomolecular Structure 2000, 29:291-325.
22. Berendsen H.J.C., van der Spoel D., van Drunen R. GROMACS: a message-passing parallel molecular dynamics implementation. Communication in Computational Physics 1995, 91:43-56.
23. Lobley A., Whitmore A.L., Wallace B.A. Dichroweb: an interactive website for the analysis of secondary structure from circular dichroism data. Bioinformatics 2002, 18:211-212.
24. Kulakova L., Galkin A., Nakayama T., Nishino T., Esaki N. Cold-active esterase from Psychrobacter sp. Ant300: gene cloning, characterization, and the effects of Gly->Pro substitution near the active site on its catalytic activity and stability. Biochemical Biophysical Acta 2004, 1696:59-65.
25. Nobeli I., Favia A.D., Thornton J.M. Protein promiscuity and its implications for biotechnology. Nature Biotechnology 2009, 27:157-167.
26. Mozhaev V.V., Khmelnitsky Y.L., Sergeeva M.V., Belova N.L., Klyachko N.L., Levashov A.V., Martinek K. Catalytic activity and denaturation of enzymes in water/organic cosolvent mixtures: a-chymotrypsin and laccase in mixed water/alcohol; water/glycol and water/formamide solvents. European Journal Biochemistry 1989, 184:597-602.
27. Zhang J., Zeng R. Molecular cloning and expression of a cold-adapted lipase gene from an Antarctic deep sea psychrotrophic bacterium Pseudomonas sp. 7323. Marine Biotechnology 2008, 10:612-621.
28. Feller G., Thiry M., Gerday C. Nucleotide sequence of the lipase gene lip2 from the Antarctic psychrotroph Moraxella TA144 and site-specific mutagenesis of the conserved serine and histidine residues. DNA Cell Biology 1991, 10:381-388.
29. Manco G., Febbraio F., Adinolfi E., Rossi M. Homology modeling and active-site residues probing of the thermophilic Alicyclobacillus acidocaldarius esterase 2. Protein Science 1999, 8:1789-1796.
30. Manco G., Giosuè E., D'Auria S., Herman P., Carrea G., Rossi M. Cloning, overexpression, and properties of a new thermophilic and thermostable esterase with sequence similarity to hormone-sensitive lipase subfamily from the archaeon Archaeoglobus fulgidus. Archives Biochemistry Biophysical 2000, 373:182-192.
31. Feller G., Gerday C. Psychrophilic enzymes: hot topics in cold adaptation. Nature Review Microbiology 2003, 1:200-208.