Labrys wisconsinensis sp. nov., a budding bacterium isolated from Lake Michigan water, and emended description of the genus Labrys

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 7, 2010, Pages 1570-1576

  Albert, Richard A ^a,b   Waas, Nancy E ^a   Langer, Stefan ^d   Pavlons, Shawn C ^a   Feldner, Jamie L ^a   Rosselló Mora, Ramon ^c   Busse, Hans Jürgen ^d  

^a Kleen Test Products   (United States)

^b Marquette University   (United States)

^c INSTITUTO MEDITERRÁNEO DE ESTUDIOS AVANZADOS   (Spain)

^d UNIVERSITY OF VETERINARY MEDICINE   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; LAKE WATER; LIPID; PUTRESCINE; RNA 16S; SPERMIDINE DERIVATIVE; UBIQUINONE;

ANAEROBIC BACTERIUM; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BIOCHEMISTRY; GENE SEQUENCE; LABRYS WISCONSINENSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REVIEW; UNITED STATES;

ALPHAPROTEOBACTERIA; BASE SEQUENCE; FRESH WATER; LIPIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S;

BACTERIA (MICROORGANISMS); LABRYS; LABRYS METHYLAMINIPHILUS; LABRYS MONACHUS;

EID: 77954655907     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.014977-0     Document Type: Review

References (35)

1. Albert, R. A., Archambault, J., Rosselló-Mora, R., Tindall, B. J. & Matheny, M. (2005). Bacillus acidicola sp. nov., a novel mesophilic, acidophilic Bacillus species isolated from acidic Sphagnum peat bogs in Wisconsin. Int J Syst Evol Microbiol 55, 2125-2130. (Pubitemid 41410433)
2. Albert, R. A., Archambault, J., Lempa, M., Hurst, B., Richardson, C., Gruenloh, S., Duran, M., Worliczek, H. L., Huber, B. E. & other authors (2007). Proposal of Viridibacillus gen. nov. and reclassification of Bacillus arvi, Bacillus arenosi and Bacillus neidei as Viridibacillus arvi gen. nov., comb. nov., Viridibacillus arenosi comb. nov. and Viridibacillus neidei comb. nov. Int J Syst Evol Microbiol 57, 2729-2737.
3. Allgaier, M. & Grossart, H. P. (2006). Diversity and seasonal dynamics of Actinobacteria populations in four lakes in northeastern Germany. Appl Environ Microbiol 72, 3489-3497.
4. Altenburger, P., Kämpfer, P., Makristathis, A., Lubitz, W. & Busse, H.-J. (1996). Classification of bacteria isolated froma medieval wall painting. J Biotechnol 47, 39-52.
5. Auran, T. B. & Schmidt, E. L. (1972). Similarities between Hyphomicrobium and Nitrobacterium with respect to fatty acids. J Bacteriol 109, 450-451.
6. Busse, H.-J. & Auling, G. (1988). Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1-8.
7. Carvalho, M. F., De Marco, P., Duque, A. F., Pacheco, C. C., Janssen, D. B. & Castro, P. M. L. (2008). Labrys portucalensis sp. nov., a fluorobenzene-degrading bacterium isolated from an industrial contaminated sediment in northern Portugal. Int J Syst Evol Microbiol 58, 692-698.
8. Chou, Y.-J., Elliot, G. N., James, E. K., Lin, K.-Y., Chou, J.-H., Sheu, S.-Y., Sheu, D.-S., Sprent, J. I. & Chen, W.-M. (2007). Labrys neptuniae sp. nov., isolated from root nodules of the aquatic legume Neptunia oleracea. Int J Syst Evol Microbiol 57, 577-581.
9. Cottrell, M. T., Waidner, L. A., Yu, L. Y. & Kirchman, D. L. (2005). Bacterial diversity of metagenomic and PCR libraries from the Delaware River. Environ Microbiol 7, 1883-1895.
10. Eiler, A. & Bertilsson, S. (2004). Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes. Environ Microbiol 6, 1228-1243.
11. Fritz, I., Strömpl, C. & Abraham, W. R. (2004). Phylogenetic relationships of the genera Stella, Labrys, and Angulomicrobium within the 'Alphaproteobacteria' and description of Angulomicrobium amanitiforme sp. nov. Int J Syst Evol Microbiol 54, 651-657.
12. Hamana, K. & Takeuchi, M. (1998). Polyamine profiles as chemotaxonomic markers within alpha, beta, gamma, delta, and epsilon subclasses of class Proteobacteria: distribution of 2-hydroxyputrescine and homospermidine. Microbiol Cult Collect 14, 1-14.
13. Hamana, K., Sakamoto, A., Tachiyanagi, S., Terauchi, E. & Takeuchi, M. (2003). Polyamine profiles of some members of the alpha subclass of the class Proteobacteria: Polyamine analysis of twenty recently described genera. Microbiol Cult Collect 19, 13-21.
14. Hamana, K., Sato, W., Gouma, K., Yu, J., Ino, Y., Umemura, Y., Mochizuki, C., Takatsuka, K., Kigure, Y. & other authors (2006). Cellular polyamine catalogues of the five classes of the phylum Proteobacteria: distributions of homospermidine within the class Alphaproteobacteria, hydroxyputrescine within the class Betaproteobacteria, norspermidine within the class Gammaproteobacteria, and spermidine within the classes Deltaproteobacteria and Epsilonproteobacteria. Ann Gunma Health Sci 27, 1-16.
15. Islam, M. S., Kawasaki, H., Nakagawa, Y., Hattori, T. & Seki, T. (2007). Labrys okinawensis sp. nov. and Labrys miyagiensis sp. nov., budding bacteria isolated from rhizosphere habitats in Japan, and emended descriptions of the genus Labrys and Labrys monachus. Int J Syst Evol Microbiol 57, 552-557.
16. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, S., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
17. Martinez-Rodriguez, A. & Mackey, B. M. (2005). Physiological changes in Campylobacter jejuni on entry into stationary phase. Int J Food Microbiol 101, 1-8.
18. Maturin, L. J. & Peeler, J. T. (2001). Aerobic plate count. In Bacteriological Analytical Manual, chapter 3. Edited by Robert I. Merker, George J. Jackson & Ruth Bandler. College Park, MD: US Food and Drug Administration.
19. Miller, J. A., Kalyuzhnaya, M. G., Noyes, E., Lara, J. C., Lidstrom, M. E. & Chistoserdova, L. (2005). Labrys methylaminiphilus sp. nov., a novel facultatively methylotrophic bacterium from a freshwater lake sediment. Int J Syst Evol Microbiol 55, 1247-1253.
20. Mueller-Spitz, S. R., Goetz, G. W. & McLellan, S. L. (2009). Temporal and spatial variability in nearshore bacterioplankton communities of Lake Michigan. FEMS Microbiol Ecol 67, 511-522.
21. Murray, R. G. E., Doetsch, R. N. & Robinow, C. F. (1994). Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology, pp. 21-41. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
22. Newton, R. J., Kent, A. D., Triplett, E. W. & McMahon, K. D. (2006). Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes. Environ Microbiol 8, 956-970.
23. Santo Domingo, J. W., Meckes, M. C., Simpson, J. M., Sloss, B. & Reasoner, D. J. (2003). Molecular characterization of bacteria inhabiting a water distribution system simulator. Water Sci Technol 47, 149-154.
24. Schauer, M., Kamenik, C. & Hahn, M. W. (2005). Ecological differentiation within a cosmopolitan group of planktonic freshwater bacteria (SOL cluster, Saprospiraceae, Bacteroides). Appl Environ Microbiol 71, 5900-5907.
25. Smibert, R. M. & Krieg, R. N. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
26. Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690.
27. Stolz, A., Busse, H.-J. & Kämpfer, P. (2007). Pseudomonas knackmussii sp. nov. Int J Syst Evol Microbiol 57, 572-576.
28. Tindall, B. J. (1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130. (Pubitemid 20205340)
29. Tindall, B. J. (1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
30. Van der Gucht, K., Vandekerckhove, T., Vloemans, N., Cousin, S., Muylaert, K., Sabbe, K., Gillis, M., Declerk, S., De Meester, L. & Vyverman, W. (2005). Characterization of bacterial communities in four freshwater lakes differing in nutrient load and food web structure. FEMS Microbiol Ecol 53, 205-220.
31. Vasil'eva, L.V. & Semenov, A.M. (1984). New budding prosthecate bacterium Labrys monahos with radial symmetry. Microbiology (English translation of Mikrobiologiia) 53, 68-75.
32. Wieser, M. & Busse, H.-J. (2000). Rapid identification of Staphylococcus epidermidis. Int J Syst Evol Microbiol 50, 1087-1093.
33. Williams, M. M., Domingo, J. W., Meckes, M. C., Kelty, C. A. & Rochon, H. S. (2004). Phylogenetic diversity of drinking water bacteria in a distribution system simulator. J Appl Microbiol 96, 954-964.
34. Yarza, P., Richter, M., Peplies, J., Euzéby, J., Amann, R., Schleifer, K.-H., Ludwig, W., Glöckner, F. O. & Rosselló- Móra, R. (2008). The all-species living tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31, 241-250.
35. Zwart, G., Crump, B. C., Kampst-van Agterveld, M., Hagen, F. & Han, S.-K. (2002). Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol 28, 141-155. (Pubitemid 34780559)