Psychrobacter aestuarii sp. nov., isolated from a tidal flat sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 7, 2010, Pages 1631-1636

  Baik, Keun Sik ^a   Park, Seong Chan ^a   Lim, Chae Hong ^a   Lee, Kang Hyun ^b   Jeon, Doo Young ^c   Kim, Choong Mo ^c   Seong, Chi Nam ^a  

^a Sunchon National University   (South Korea)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^c Jeollanam do Institute of Health and Environment   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID DERIVATIVE; QUINONE DERIVATIVE; RNA 16S; SODIUM CHLORIDE; UBQUINONE 8; UNCLASSIFIED DRUG;

BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CLADISTICS; CONTROLLED STUDY; DNA BASE COMPOSITION; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; KOREA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; PSYCHROBACTER; PSYCHROBACTER AESTUARII; PSYCHROBACTER CELER; PSYCHROBACTER PACIFICENSIS; REVIEW; SEDIMENT; TAXONOMY; TEMPERATURE; TYPE STRAIN;

BASE SEQUENCE; FATTY ACIDS; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PSYCHROBACTER; RNA, RIBOSOMAL, 16S; SEAWATER;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PSYCHROBACTER; PSYCHROBACTER CELER; PSYCHROBACTER PACIFICENSIS;

EID: 77954632411     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.016782-0     Document Type: Review

References (43)

1. Bakermans, C., Ayala-del-Río, H. L., Ponder, M. A., Vishnivetskaya, T., Gilichinsky, D., Thomashow, M. F. & Tiedje, J. M. (2006). Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost. Int J Syst Evol Microbiol 56, 1285-1291. (Pubitemid 43933823)
2. Barrow, G. I. & Feltham, R. K. A. (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
3. Bowman, J. P., Cavanagh, J., Austin, J. J. & Sanderson, K. (1996). Novel Psychrobacter species from Antarctic ornithogenic soils. Int J Syst Bacteriol 46, 841-848. (Pubitemid 26339201)
4. Bowman, J. P., Nichols, D. S. & McMeekin, T. A. (1997). Psychrobacter glacincola sp. nov., a halotolerant, psychrophilic bacterium isolated from Antarctic sea ice. Syst Appl Microbiol 20, 209-215.
5. Bozal, N., Montes, J., Tudela, E. & Guinea, J. (2003). Characterization of several Psychrobacter strains isolated from Antarctic environments and description of Psychrobacter luti sp. nov. and Psychrobacter fozii sp. nov. Int J Syst Evol Microbiol 53, 1093-1100.
6. Chun, J. & Goodfellow, M. (1995). A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45, 240-245.
7. Chun, J., Bae, K. S., Moon, E. Y., Jung, S. O., Lee, H. K. & Kim, S. J. (2000). Nocardiopsis kunsanensis sp. nov., a moderately halophilic actinomycete isolated from a saltern. Int J Syst Evol Microbiol 50, 1909-1913.
8. CLSI (2003). Performance Standards for Antimicrobial Disk Susceptibility Tests, 8th edn. Approved Standard M2-A8. Wayne, PA: Clinical Laboratory Standards Institute.
9. Collins, M. D. (1985). Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267-287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
10. Denner, E. B. M., Mark, B., Busse, H.-J., Turkiewicz, M. & Lubitz, W. (2001). Psychrobacter proteolyticus sp. nov., a psychrotrophic, halotolerant bacterium isolated from the Antarctic krill Euphausia superba Dana, excreting a cold-adapted metalloprotease. Syst Appl Microbiol 24, 44-53.
11. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
12. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees. Science 155, 279-284.
13. González, C. J., Santos, J. A., García-López, M. L. & Otero, A. (2000). Psychrobacters and related bacteria in freshwater fish. J Food Prot 63, 315-321.
14. Heuchert, A., Glöckner, F. O., Amann, R. & Fischer, U. (2004). Psychrobacter nivimaris sp. nov., a heterotrophic bacterium attached to organic particles isolated from the South Atlantic (Antarctica). Syst Appl Microbiol 27, 399-406.
15. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
16. Jung, S.-Y., Lee, M.-H., Oh, T.-K., Park, Y.-H. & Yoon, J.-H. (2005). Psychrobacter cibarius sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 55, 577-582.
17. Juni, E. & Heym, G. A. (1986). Psychrobacter immobilis gen. nov., sp. nov.: genospecies composed of Gram-negative, aerobic, oxidase-positive coccobacilli. Int J Syst Bacteriol 36, 388-391. (Pubitemid 16057127)
18. Kämpfer, P., Albrecht, A., Buczolits, S. & Busse, H.-J. (2002). Psychrobacter faecalis sp. nov., a new species from a bioaerosol originating from pigeon faeces. Syst Appl Microbiol 25, 31-36. (Pubitemid 34602142)
19. Kovacs, N. (1956). Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 178, 703.
20. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
21. Maruyama, A., Honda, D., Yamamoto, H., Kitamura, K. & Higashihara, T. (2000). Phylogenetic analysis of psychrophilic bacteria isolated from the Japan Trench, including a description of the deep-sea species Psychrobacter pacificensis sp. nov. Int J Syst Evol Microbiol 50, 835-846.
22. MIDI (1999). Sherlock Microbial Identification System Operating Manual, version 3.0. Newark, DE: MIDI Inc.
23. Richard, C. & Kiredjian, M. (1995). Laboratory Methods for the Identification of Strictly Aerobic Gram-negative Bacilli. Paris: Institut Pasteur.
24. Romanenko, L. A., Schumann, P., Rohde, M., Lysenko, A. M., Mikhailov, V. V. & Stackebrandt, E. (2002). Psychrobacter submarinus sp. nov. and Psychrobacter marincola sp. nov., psychrophilic halophiles from marine environments. Int J Syst Evol Microbiol 52, 1291-1297.
25. Romanenko, L. A., Lysenko, A. M., Rohde, M., Mikhailov, V. V. & Stackebrandt, E. (2004). Psychrobacter maritimus sp. nov. and Psychrobacter arenosus sp. nov., isolated from coastal sea ice and sediments of the Sea of Japan. Int J Syst Evol Microbiol 54, 1741-1745.
26. Romanenko, L. A., Tanlka, N., Frolova, G. M. & Mikhailov, V. V. (2009). Psychrobacter fulvigenes sp. nov., isolated from a marine crustacean from the Sea of Japan. Int J Syst Evol Microbiol 59, 1480-1489.
27. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
28. Shivaji, S., Reddy, G. S. N., Raghavan, P. U. M., Sarita, N. B. & Deille, D. (2004). Psychrobacter salsus sp. nov. and Psychrobacter adeliensis sp. nov. isolated from fast ice from Adelie Land, Antarctica. Syst Appl Microbiol 27, 628-635.
29. Shivaji, S., Reddy, G. S. N., Suresh, K., Gupta, P., Chintalapati, S., Schumann, P., Stackebrandt, E. & Matsumoto, G. I. (2005). Psychrobacter vallis sp. nov. and Psychrobacter aquaticus sp. nov., from Antarctica. Int J Syst Evol Microbiol 55, 757-762.
30. Skerman, V. B. D. (1967). A Guide to the Identification of the Genera of Bacteria, 2nd edn. Baltimore: Williams & Wilkins.
31. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
32. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
33. Swofford, D. L. (1998). Phylogenetic analysis using parsimony (PAUP), version 4. Sunderland, MA: Sinauer Associates.
34. Vela, A. I., Collins, M. D., Latre, M. V., Mateos, A., Moreno, M. A., Hutson, R., Domínguez, L. & Fernández-Garayzábal, J. F. (2003). Psychrobacter pulmonis sp. nov., isolated from the lungs of lambs. Int J Syst Evol Microbiol 53, 415-419.
35. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
36. Yamaguchi, S. & Yokoe, M. (2000). A novel protein-deamidating enzyme from Chryseobacterium proteolyticum sp. nov., a newly isolated bacterium from soil. Appl Environ Microbiol 66, 3337-3343.
37. Yoon, J.-H., Kang, K. H. & Park, Y.-H. (2003). Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 53, 449-454.
38. Yoon, J.-H., Lee, C.-H., Yeo, S.-H. & Oh, T.-K. (2005a). Psychrobacter aquimaris sp. nov. and Psychrobacter namhaensis sp. nov., isolated from sea water of the South Sea in Korea. Int J Syst Evol Microbiol 55, 1007-1013.
39. Yoon, J.-H., Yeo, S.-H., Oh, T.-K. & Park, Y.-H. (2005b). Psychrobacter alimentarius sp. nov., isolated from squid jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 55, 171-176.
40. Yoon, J. H., Lee, C. H., Kang, S. J. & Oh, T. K. (2005c). Psychrobacter celer sp. nov., isolated from sea water of the South Sea in Korea. Int J Syst Evol Microbiol 55, 1885-1890.
41. Yumoto, I., Hirota, K., Sogabe, Y., Nodasaka, Y., Yokota, Y. & Hoshino, T. (2003). Psychrobacter okhotskensis sp. nov., a lipaseproducing facultative psychrophile isolated from the coast of the Okhotsk Sea. Int J Syst Evol Microbiol 53, 1985-1989.
42. Yumoto, I., Hirota, K., Kimoto, H., Nodasaka, Y., Matsuyama, H. & Yoshimune, K. (2009). Psychrobacter piscatorii sp. nov., psychrotolerant bacterium exhibiting high catalase activity isolated from oxidative environment. Int J Syst Evol Microbiol 60, 205-208.
43. ZoBell, C. E. (1941). Studies on marine bacteria. I. The cultural requirements of heterotrophic aerobes. J Mar Res 4, 42-75.