Enterorhabdus caecimuris sp. nov., a member of the family Coriobacteriaceae isolated from a mouse model of spontaneous colitis, and emended description of the genus Enterorhabdus Clavel et al. 2009

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 7, 2010, Pages 1527-1531

  Clavel, Thomas ^a   Duck, Wayne ^b   Charrier, Cédric ^c   Wenning, Mareike ^a   Elson, Charles ^b   Haller, Dirk ^a  

^a TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^b University of Alabama at Birmingham   (United States)

^c NOVABIOTICS LTD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CEFOTAXIME; DAIDZEIN; FATTY ACID; QUINONE DERIVATIVE; RNA 16S;

ANOXIA; BACTERIAL STRAIN; CHEMOTAXONOMY; COLITIS; CORIOBACTERIACEAE; DNA DNA HYBRIDIZATION; ENTERORHABDUS CAECIMURIS; ENTERORHABDUS MUCOSICOLA; GENE SEQUENCE; GENOTYPE; INFRARED SPECTROSCOPY; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; REVIEW; SEQUENCE ANALYSIS;

ACTINOBACTERIA; ANIMALS; BASE SEQUENCE; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; COLITIS; LIPIDS; MICE; MICE, INBRED C3H; MICROBIAL SENSITIVITY TESTS; MOLECULAR SEQUENCE DATA; RNA, RIBOSOMAL, 16S; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); CORIOBACTERIACEAE;

EID: 77954626040     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.015016-0     Document Type: Review

References (25)

1. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466. (Pubitemid 8175059)
2. Clavel, T., Charrier, C., Braune, A., Wenning, M., Blaut, M. & Haller, D. (2009). Isolation of bacteria from the ileal mucosa of TNFdeltaARE mice and description of Enterorhabdus mucosicola gen. nov., sp. nov. Int J Syst Evol Microbiol 59, 1805-1812.
3. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
4. Duck, L. W., Walter, M. R., Novak, J., Kelly, D., Tomasi, M., Cong, Y. & Elson, C. O. (2007). Isolation of flagellated bacteria implicated in Crohn's disease. Inflamm Bowel Dis 13, 1191-1201.
5. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
6. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
7. Kirschner, C., Maquelin, K., Pina, P., Ngo Thi, N. A., Choo-Smith, L. P., Sockalingum, G. D., Sandt, C., Ami, D., Orsini, F. & other authors (2001). Classification and identification of enterococci: a comparative phenotypic, genotypic, and vibrational spectroscopic study. J Clin Microbiol 39, 1763-1770.
8. Ley, R. E., Backhed, F., Turnbaugh, P., Lozupone, C. A., Knight, R. D. & Gordon, J. I. (2005). Obesity alters gut microbial ecology. Proc Natl Acad Sci U S A 102, 11070-11075.
9. Ley, R. E., Turnbaugh, P. J., Klein, S. & Gordon, J. I. (2006). Microbial ecology: human gut microbes associated with obesity. Nature 444, 1022-1023.
10. Maruo, T., Sakamoto, M., Ito, C., Toda, T. & Benno, Y. (2008). Adlercreutzia equolifaciens gen. nov., sp. nov., an equol-producing bacterium isolated from human faeces, and emended description of the genus Eggerthella. Int J Syst Evol Microbiol 58, 1221-1227.
11. Matthies, A., Clavel, T., Gutschow, M., Engst, W., Haller, D., Blaut, M. & Braune, A. (2008). Conversion of daidzein and genistein by an anaerobic bacterium newly isolated from the mouse intestine. Appl Environ Microbiol 74, 4847-4852.
12. Mesbah, M., Premachandran, U. & Whitman, W. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
13. Minamida, K., Ota, K., Nishimukai, M., Tanaka, M., Abe, A., Sone, T., Tomita, F., Hara, H. & Asano, K. (2008). Asaccharobacter celatus gen. nov., sp. nov., isolated from rat caecum. Int J Syst Evol Microbiol 58, 1238-1240.
14. Rhuland, L. E., Work, E., Denman, R. F. & Hoare, D. S. (1955). The behavior of the isomers of a,e-diaminopimelic acid on paper chromatograms. J Am Chem Soc 77, 4844-4846.
15. Rossello-Mora, R. & Amann, R. (2001). The species concept for prokaryotes. FEMS Microbiol Rev 25, 39-67.
16. Santos, S. R. & Ochman, H. (2004). Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins. Environ Microbiol 6, 754-759.
17. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
18. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849. (Pubitemid 24315169)
19. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
20. Sundberg, J. P., Elson, C. O., Bedigian, H. & Birkenmeier, E. H. (1994). Spontaneous, heritable colitis in a new substrain of C3H/HeJ mice. Gastroenterology 107, 1726-1735. (Pubitemid 24357626)
21. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
22. Visuvanathan, S., Moss, M. T., Standord, J. L., Hermon-Taylor, J. & McFadden, J. J. (1989). Simple enzymatic method for isolation of DNA from diverse bacteria. J Microbiol Methods 10, 59-64.
23. Wenning, M., Scherer, S. & Naumann, D. (2008). Infrared spectroscopy in the identification of microorganisms. In Vibrational Spectroscopy for Medical Diagnosis, pp. 71-96. Edited by M. Diem, P. R. Griffith & J. M. Chalmers. Chichester, UK: Wiley.
24. Whiton, R. S., Lau, P., Morgan, S. L., Gilbart, J. & Fox, A. (1985). Modifications in the alditol acetate method for analysis of muramic acid and other neutral and amino sugars by capillary gas chromatography-mass spectrometry with selected ion monitoring. J Chromatogr 347, 109-120. (Pubitemid 16225426)
25. Würdemann, D., Tindall, B. J., Pukall, R., Lünsdorf, H., Strömpl, C., Namuth, T., Nahrstedt, H., Wos-Oxley, M., Ott, S., Schreiber, S., Timmis, K. N. & Oxley, A. P. A. (2009). Gordonibacter pamelaeae gen. nov., sp. nov., a new member of the Coriobacteriaceae isolated from a patient with Crohn's disease and reclassification of Eggerthella hongkongensis Lau et al. 2006 as Paraeggerthella hongkongensis gen. nov., comb. nov. Int J Syst Evol Microbiol 59, 1405-1415.