Transcriptome analysis of the phytobacterium xylella fastidiosa growing under xylem-based chemical conditions

Journal of Biomedicine and Biotechnology

Volumn 2010, Issue , 2010, Pages

  Nunes, Luiz R ^a   Ciraulo, Maristela Boaceff ^a   Santos, Daiene Souza ^a   Rodrigues, Ana Claudia De Freitas Oliveira ^a   Oliveira, Marcus Vinícius De ^a   Rodrigues, Tiago ^a   Oliveira, Regina Costa De ^a  

^a UNIVERSIDADE DE MOGI DAS CRUZES   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME;

AEROBIC METABOLISM; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL VIRULENCE; BACTERIUM CULTURE; CATHARANTHUS ROSEUS; CHLOROSIS; CULTURE MEDIUM; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENETIC ANALYSIS; GRAPE; HYBRIDIZATION; MICROARRAY ANALYSIS; NONHUMAN; PIERCE DISEASE; PLANT DISEASE; TRANSCRIPTION REGULATION; XYLELLA FASTIDIOSA; XYLEM; BACTERIAL GENE; CYTOLOGY; DRUG EFFECT; ELECTRON TRANSPORT; GENE EXPRESSION PROFILING; GENETIC TRANSCRIPTION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIOLOGY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; UPREGULATION; XYLELLA;

BACTERIA (MICROORGANISMS); CITRUS; VITACEAE; VITIS; XYLELLA FASTIDIOSA;

AEROBIOSIS; CULTURE MEDIA; ELECTRON TRANSPORT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; TRANSCRIPTION, GENETIC; UP-REGULATION; XYLELLA; XYLEM;

EID: 77954549624     PISSN: 11107243     EISSN: 11107251     Source Type: Journal    
DOI: 10.1155/2010/781365     Document Type: Article

References (61)

1. Wells J. M., Raju B. C., Hung H. Y., Weisburg W. G., Mandelco-Paul L., Brenner D. J., Xylella fastidiosa gen nov sp nov: gram-negative, xylem-limited, fastidious plant bacteria related to Xanthomonas spp. International Journal of Systematic Bacteriology 1987 37 136 143
2. Hopkins D. L., Xylella fastidiosa: xylem-limited bacterial pathogen of plants Annual Review of Phytopathology 1989 271 290
3. Purcell A. H., Hopkins D. L., Fastidious xylem-limited bacterial plant pathogens Annual Review of Phytopathology 1996 34 131 151
4. Chatterjee S., Almeida R. P. P., Lindow S., Living in two worlds: the plant and insect lifestyles of Xylella fastidiosa Annual Review of Phytopathology 2008 46 243 271
5. da Silva V. S., Shida C. S., Rodrigues F. B., Comparative genomic characterization of citrus-associated Xylella fastidiosa strains BMC Genomics 2007 8, article 474
6. Moreira L. M., de Souza R. F., Almeida N. F. Jr., Comparative genomics analyses of citrus-associated bacteria Annual Review of Phytopathology 2004 42 163 184
7. Simpson A. J., Reinach F. C., Arruda P., The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis Nature 2000 406 6792 151 159
8. Bhattacharyya A., Stilwagen S., Ivanova N., Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains Proceedings of the National Academy of Sciences of the United States of America 2002 99 19 12403 12408
9. Van Sluys M. A., de Oliveira M. C., Monteiro-Vitorello C. B., Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa Journal of Bacteriology 2003 185 3 1018 1026
10. Davis M. J., Purcell A. H., Thomson S. V., Isolation media for the Pierce's disease bacterium Phytopathology 1980 70 425 429
11. Davis M. J., French W. J., Schaad N. W., Axenic culture of the bacteria associated with phony disease of peach and plum leaf scald Current Microbiology 1981 6 5 309 314
12. Hartung J. S., Beretta J., Brlansky R. H., Spisso J., Lee R. F., Citrus variegated chlorosis bacterium: axenic culture, pathogenicity, and serological relationships with other strains of Xylella fastidiosa Phytopathology 1994 84 6 591 597
13. Campanharo J. C., Lemos M. V. F., de Macedo Lemos E. G., Growth optimization procedures for the phytopathogen Xylella fastidiosa Current Microbiology 2003 46 2 99 102
14. Wells J. M., Raju B. C., Nyland G., Lowe S. K., Medium for the isolation and growth of the bacteria associated with plum leaf scald and phony peach disease Applied and Environmental Microbiology 1981 42 357 363
15. Selosse M.-A., Baudoin E., Vandenkoornhuyse P., Symbiotic microorganisms, a key for ecological success and protection of plants Comptes Rendus Biologies 2004 327 7 639 648
16. Leite B., Andersen P. C., Ishida M. L., Colony aggregation and biofilm formation in xylem chemistry-based media for Xylella fastidiosa FEMS Microbiology Letters 2004 230 2 283 290
17. de Souza A. A., Takita M. A., Pereira E. O., Coletta-Filho H. D., Machado M. A., Expression of pathogenicity-related genes of Xylella fastidiosa in vitro and in planta Current Microbiology 2005 50 4 223 228
18. Costa de Oliveira R., Yanai G. M., Muto N. H., Competitive hybridization on spotted microarrays as a tool to conduct comparative genomic analyses of Xylella fastidiosa strains FEMS Microbiology Letters 2002 216 1 15 21
19. Nunes L. R., Rosato Y. B., Muto N. H., Microarray analyses of Xylella fasfidiosa provide evidence of coordinated transcription control of laterally transferred elements Genome Research 2003 13 4 570 578
20. Tusher V. G., Tibshirani R., Chu G., Significance analysis of microarrays applied to the ionizing radiation response Proceedings of the National Academy of Sciences of the United States of America 2001 98 9 5116 5121
21. Saeed A. I., Bhagabati N. K., Braisted J. C., TM4 microarray software suite Methods in Enzymology 2006 411 134 193
22. Andersen P. C., Brodbeck B. V., Mizell R. F., Water stress- and nutrient solution-mediated changes in water relations and amino acids, organic acids, and sugars in xylem fluid of Prunus salicina and Lagerstroemia indica Journal of the American Society for Horticultural Science 1995 120 1 36 42
23. Kreuzwieser J., Graus M., Wisthaler A., Hansel A., Rennenberg H., Schnitzler J.-P., Xylem-transported glucose as an additional carbon source for leaf isoprene formation in Quercus robur New Phytologist 2002 156 2 171 178
24. Mayrhofer S., Heizmann U., Magel E., Carbon balance in leaves of young poplar trees Plant Biology 2004 6 6 730 739
25. Andersen P. C., Brodbeck B. V., Diurnal and temporal changes in the chemical profile of xylem exudates from Vitis rotundifoli Physiologia Plantarum 1989 75 63 70
26. Andersen P. C., Brodbeck B. V., Influence of fertilization on xylem fluid chemistry of Vitis rotundifolia Noble and Vitis hybrid Suwannee American Journal of Enology and Viticulture 1991 42 245 251
27. Zaini P. A., De La Fuente L., Hoch H. C., Burr T. J., Grapevine xylem sap enhances biofilm development by Xylella fastidiosa FEMS Microbiology Letters 2009 295 1 129 134
28. Morel F., Frot-Coutaz J., Aubel D., Portalier R., Atlan D., Characterization of a prolidase from Lactobacillus delbrueckii subsp. bulgaricus CNRZ 397 with an unusual regulation of biosynthesis Microbiology 1999 145 2 437 446
29. Harry E., Monahan L., Thompson L., Bacterial cell division: the mechanism and its precison International Review of Cytology 2006 253 27 94
30. Hua Q., Yang C., Oshima T., Mori H., Shimizu K., Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures Applied and Environmental Microbiology 2004 70 4 2354 2366
31. Tao H., Bausch C., Richmond C., Blattner F. R., Conway T., Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media Journal of Bacteriology 1999 181 20 6425 6440
32. Newman K. L., Almeida R. P. P., Purcell A. H., Lindow S. E., Use of a green fluorescent strain for the analysis of Xylella fastidiosa colonization of Vitis vinifera Applied and Environmental Microbiology 2003 69 12 7319 7327
33. Alves E., Marucci C. R., Lopes J. R. S., Leite B., Leaf symptoms on plum, coffee and citrus and the relationship with the extent of xylem vessels colonized by Xylella fastidiosa Journal of Phytopathology 2004 152 5 291 297
34. Sijpesteijn A. K., Induction of cytochrome formation and stimulation of oxidative dissimilation by hemin in Streptococcus lactis and Leuconostoc mesenteroides Antonie van Leeuwenhoek 1970 36 1 335 348
35. Duwat P., Sourice S., Cesselin B., Respiration capacity of the fermenting bacterium Lactococcus lactis and its positive effects on growth and survival Journal of Bacteriology 2001 183 15 4509 4516
36. Duwat P., de Oliveira R., Ehrlich D., Boiteux S., Repair of oxidative DNA damage in grampositive bacteria: the Lactococcus lactis Fpg protein Microbiology 1995 141 2 411 417
37. Gaudu P., Lamberet G., Poncet S., Gruss A., CcpA regulation of aerobic and respiration growth in Lactococcus lactis Molecular Microbiology 2003 50 1 183 192
38. Facincani A. P., Ferro J. A., Pizauro J. M. Jr., Carbohydrate metabolism of Xylella fastidiosa: detection of glycolytic and pentose phosphate pathway enzymes and cloning and expression of the enolase gene Genetics and Molecular Biology 2003 26 2 203 211
39. Gudon E., Renault P., Ehrlich S. D., Delorme C., Transcriptional pattern of genes coding for the proteolytic system of Lactococcus lactis and evidence for coordinated regulation of key enzymes by peptide supply Journal of Bacteriology 2001 183 12 3614 3622
40. Chang C. J., Donaldson R. C., Xylella fastidiosa: cultivation in chemically defined medium Phytopathology 1993 83 2 192 194
41. Schneider A., Kreuzwieser J., Schupp R., Sauter J. J., Rennenberg H., Thiol and amino acid composition of the xylem sap of poplar trees (Populus x canadensis 'robusta') Canadian Journal of Botany 1994 72 3 347 351
42. Kstner B., Schupp R., Schulze E.-D., Rennenberg H., Organic and inorganic sulfur transport in the xylem sap and the sulfur budget of Picea abies trees Tree Physiology 1998 18 1 1 9
43. Mkel P., McLaughlin J. E., Boyer J. S., Imaging and quantifying carbohydrate transport to the developing ovaries of maize Annals of Botany 2005 96 5 939 949
44. Onda Y., Ito K., Changes in the composition of xylem sap during development of the spadix of skunk cabbage (Symplocarpus foetidus) Bioscience, Biotechnology and Biochemistry 2005 69 6 1156 1161
45. Heizmann U., Kreuzwieser J., Schnitzler J.-P., Brggemann N., Rennenberg H., Assimilate transport in the xylem sap of pedunculate oak (Quercus robur) saplings Plant Biology 2001 3 2 132 138
46. He Y.-W., Wang C., Zhou L., Song H., Dow J. M., Zhang L.-H., Dual signaling functions of the hybrid sensor kinase RpfC of Xanthomonas campestris involve either phosphorelay or receiver domain-protein interaction Journal of Biological Chemistry 2006 281 44 33414 33421
47. Liaw S.-J., Lai H.-C., Wang W.-B., Modulation of swarming and virulence by fatty acids through the RsbA protein in Proteus mirabilis Infection and Immunity 2004 72 12 6836 6845
48. Osiro D., Colnago L. A., Otoboni A. M. M. B., A kinetic model for Xylella fastidiosa adhesion, biofilm formation, and virulence FEMS Microbiology Letters 2004 236 2 313 318
49. de Souza A. A., Takita M. A., Coletta-Filho H. D., Analysis of gene expression in two growth states of Xylella fastidiosa and its relationship with pathogenicity Molecular Plant-Microbe Interactions 2003 16 10 867 875
50. Boels I. C., Kleerebezem M., de Vos W. M., Engineering of carbon distribution between glycolysis and sugar nucleotide biosynthesis in Lactococcus lactis Applied and Environmental Microbiology 2003 69 2 1129 1135
51. de Vos W. M., Metabolic engineering of sugar catabolism in lactic acid bacteria Antonie van Leeuwenhoek 1996 70 24 223 242
52. de Souza A. A., Takita M. A., Coletta-Filho H. D., Gene expression profile of the plant pathogen Xylella fastidiosa during biofilm formation in vitro FEMS Microbiology Letters 2004 237 2 341 353
53. Nudleman E., Kaiser D., Pulling together with type IV pili Journal of Molecular Microbiology and Biotechnology 2004 7 1-2 52 62
54. Meng Y., Li Y., Galvani C. D., Upstream migration of Xylella fastidiosa via pilus-driven twitching motility Journal of Bacteriology 2005 187 16 5560 5567
55. Cotter S. E., Yeo H.-J., Juehne T., St. Geme J. W. III, Architecture and adhesive activity of the Haemophilus influenzae Hsf adhesin Journal of Bacteriology 2005 187 13 4656 4664
56. St. Geme J. W. III, Cutter D., Barenkamp S. J., Characterization of the genetic locus encoding Haemophilus influenzae type b surface fibrils Journal of Bacteriology 1996 178 21 6281 6287
57. Muoz-Rojas J., Fuentes-Ramrez L. E., Caballero-Mellado J., Antagonism among Gluconacetobacter diazotrophicus strains in culture media and in endophytic association FEMS Microbiology Ecology 2005 54 1 57 66
58. Drider D., Fimland G., Hchard Y., McMullen L. M., Prvost H., The continuing story of class IIa bacteriocins Microbiology and Molecular Biology Reviews 2006 70 2 564 582
59. Pashalidis S., Moreira L. M., Zaini P. A., Whole-genome expression profiling of Xylella fastidiosa in response to growth on glucose OMICS 2005 9 1 77 90
60. Andersen P. C., Brodbeck B. V., Oden S., Shriner A., Leite B., Influence of xylem fluid chemistry on planktonic growth, biofilm formation and aggregation of Xylella fastidiosa FEMS Microbiology Letters 2007 274 2 210 217
61. Bi J. L., Dumenyo C. K., Hernandez-Martinez R., Cooksey D. A., Toscano N. C., Effect of host plant xylem fluid on growth, aggregation, and attachment of Xlella fastidiosa Journal of Chemical Ecology 2007 33 3 493 500