Molecular detection of potentially toxic cyanobacteria and their associated bacteria in lake water column and sediment

World Journal of Microbiology and Biotechnology

Volumn 26, Issue 8, 2010, Pages 1473-1482

  Kormas, Konstantinos Ar ^a   Vardaka, Elisabeth ^b   Moustaka Gouni, Maria ^c   Kontoyanni, Vasiliki ^a   Petridou, Evi ^a   Gkelis, Spyros ^a,c   Neofitou, Christos ^a  

^a UNIVERSITY OF THESSALY   (Greece)

^b ALEXANDER TECHNOLOGICAL EDUCATIONAL INSTITUTE OF THESSALONIKI   (Greece)

^c ARISTOTLE UNIVERSITY OF THESSALONIKI   (Greece)

Author keywords

16S rRNA; Bacteria; Cyanobacteria; Kastoria; Lake; Sediment; Water column

Indexed keywords

16S RRNA; BACTERIAL COMMUNITY; BACTERIAL COMMUNITY STRUCTURE; BACTERIAL DIVERSITY; CYANOBACTERIAL BLOOMS; LAKE SEDIMENTS; LAKE WATERS; MICROCYSTIS; MICROCYSTIS AERUGINOSA; MOLECULAR DETECTION; MOLECULAR DIVERSITY; ORGANIC MATTER; PHYLOTYPES; SPECIFIC PRIMERS; WATER COLUMNS; WATER-BLOOM;

BLOOMS (METAL); LAKES; RNA; SEDIMENTOLOGY; TOXIC MATERIALS;

BACTERIOLOGY;

BACTERIA (MICROORGANISMS); CHROOCOCCALES; CYANOBACTERIA; MICROCYSTIS; MICROCYSTIS AERUGINOSA; UNCULTURED BACTERIUM;

EID: 77954458172     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-010-0322-x     Document Type: Article

References (38)

1. Berg KA, Lyra C, Sivonen K, Paulin L, Suomalainen S, Tuomi P, Rapala J (2009) High diversity of cultivable heterotrophic bacteria in association with cyanobacterial water blooms. ISME J 3: 314-325.
2. Chao A (1984) Non-parametric estimation of the number of classes in a population. Scand J Stat 11: 265-270.
3. Chao A (1987) Estimating the population size for capture-recapture data with unequal catchability. Biometrics 43: 783-791.
4. Cook CM, Vardaka E, Lanaras T (2004) Toxic cyanobacteria in Greek freshwaters, 1987-2000: occurrence, toxicity, and impacts in the Mediterranean region. Acta Hydrochim Hydrobiol 32: 107-124.
5. Debroas D, Humbert J-F, Enault F, Bronner G, Faubladier M, Cornillot E (2009) Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget-France). Environ Microbiol 11: 2412-2424.
6. Falconer IR (1999) An overview of problems caused by toxic blue-green algae (cyanobacteria) in drinking and recreational water. Environ Toxicol 14: 5-12.
7. Falconer IR, Bartram J, Chorus I, Kuiper-Goodman T, Utkilen H, Burch M, Codd GA (1999) Safe levels and safe practices. In: Chorus I, Bartram J (eds) Toxic cyanobacteria in water. World Health Organization. E and FN Spon, London, pp 155-178.
8. Gkelis S, Harjunpää V, Lanaras T, Sivonen K (2005) Diversity of hepatotoxic microcystins and bioactive anabaenopeptins in cyanobacterial blooms from Greek freshwaters. Environ Toxicol 20: 249-256.
9. Good IJ (1953) The population frequencies of species and the estimation of population parameters. Biometrika 43: 45-63.
10. Kemp PF, Aller JY (2004) Estimating prokaryotic diversity: when 16S rDNA libraries are large enough? Limnol Oceanogr Methods 2: 114-125.
11. Komárek J, Hubel M, Hubel H, Smarda J (1993) The Nodularia studies. Part II: taxonomy. Arch Hydrobiol, Suppl. 96. Algol Stud 68: 1-25.
12. Lanaras T, Tsitsamis S, Chlichlia C, Cook CM (1989) Toxic cyanobacteria in Greek freshwaters. J Appl Phycol 1: 67-73.
13. Lane DJ (1991) Nucleic acids techniques in bacterial systematics. Wiley, New York.
14. Maidak BL, Cole JR, Lilburn TG, Parker CT Jr, Saxman PR, Farris RJ et al (2001) The RDP-II (Ribosomal Database Project). Nucleic Acids Res 29: 173-174.
15. Moustaka-Gouni M (1993) Phytoplankton succession and diversity in a warm monomictic, relatively shallow lake: Lake Volvi, Macedonia, Greece. Hydrobiologia 249: 33-42.
16. Moustaka-Gouni M, Vardaka E, Michaloudi E, KAr Kormas, Tryfon E, Mihalatou H, Gkelis S, Lanaras T (2006) Plankton food web structure in a eutrophic polymictic lake with a history of toxic cyanobacterial blooms. Limnol Oceanogr 51: 715-727.
17. Moustaka-Gouni M, Vardaka E, Tryfon E (2007) Phytoplankton species succession in a shallow Mediterranean lake (L. Kastoria, Greece): steady-state dominance of Limnothrix redekei, Microcystis aeruginosa and Cylindrospermopsis raciborskii. Hydrobiologia 575: 129-140.
18. Moustaka-Gouni M, Kormas KA, Vardaka E, Katsiapi M, Gkelis S (2009) Raphidiopsis mediterranea SKUJA represents non-heterocytous life-cycle stages of Cylindrospermopsis raciborskii (WOLOSZYNSKA) SEENAYYA et SUBBA RAJU in Lake Kastoria (Greece), its type locality: evidence by morphological and phylogenetic analysis. Harmful Algae 8: 864-872.
19. Nelson CE (2009) Phenology of high-elevation pelagic bacteria: the roles of meteorologic variability, catchment inputs and thermal stratification in structuring communities. ISME J 3: 13-30.
20. Nübel U, Garcia-Pichel F, Muyzer G (1997) PCR primers to amplify 16S rRNA genes from Cyanobacteria. Appl Environ Microbiol 63: 3327-3332.
21. Ohtsuka T (2005) Epipelic diatoms blooming in Isahaya Tidal Flat in the Ariake Sea, Japan, before the drainage following the Isahaya-Bay Reclamation Project. Phycol Res 53: 138-148.
22. Padisak J (2003) Estimation of minimum sedimentary inoculum (akinete) pool of Cylindrospermopsis raciborskii: a morphology and life-cycle based method. Hydrobiologia 502: 389-394.
23. Paerl HW, Fulton RS (2006) Ecology of harmful cyanobacteria. In: Granéli E, Turner JT (eds) Ecology of harmful algae. Ecological Studies 189. Springer, Berlin, pp 95-109.
24. Schwarz JIK, Eckert W, Conrad R (2007) Community structure of Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel). Syst Appl Microbiol 30: 239-254.
25. Sivonen K, Jones G (1999) Cyanobacterial toxins. In: Chorus I, Bartram J (eds) Toxic cyanobacteria in water. World Health Organization. E and FN Spon, London, pp 41-110.
26. Spiegelman D, Whissell G, Greer CW (2005) A survey of the methods for the characterization of microbial consortia and communities. Can J Microbiol 51: 355-386.
27. Spring S, Schulze R, Overmann J, Schleifer K-H (2000) Identification and characterization of ecologically significant prokaryotes in the sediment of freshwater lakes: molecular and cultivation studies. FEMS Microbiol Rev 24: 573-590.
28. Tamaki H, Sekiguchi Y, Hanada S, Nakamura K, Nomura N, Matsumura M, Kamagata Y (2005) Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques. Appl Environ Microbiol 71: 2162-2169.
29. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4. 0. Mol Biol Evol 24: 1596-1599.
30. Tryfon E, Moustaka-Gouni M (1997) Species composition and seasonal cycles of phytoplankton with special reference to the nanoplankton of Lake Mikri Prespa. Hydrobiologia 351: 61-75.
31. Vardaka E, Moustaka-Gouni M, Cook CM, Lanaras T (2005) Cyanobacterial blooms and water quality in Greek freshwaters. J Appl Phycol 17: 391-401.
32. Wobus A, Bleul C, Maassen S, Scheerer C, Schuppler M, Jacobs E, Röske I (2003) Microbial diversity and functional characterization of sediments from reservoirs of different trophic state. FEMS Microbiol Ecol 46: 331-347.
33. Wu X, Xi W, Ye W, Yang H (2007) Bacterial community composition of a shallow hypertrophic freshwater lake in China, revealed by16S rRNA gene sequences. FEMS Microbiol Ecol 61: 85-96.
34. Ye W, Liu X, Lin S, Tan J, Pan J, Li D, Yang H (2009a) The vertical distribution of bacterial and archaeal communities in the water and sediment of Lake Taihu. FEMS Microbiol Ecol 70: 263-276.
35. Ye W, Liu X, Tan J, Li D, Yang H (2009b) Diversity and dynamics of microcystin-producing cyanobacteria in China's third largest lake, Lake Taihu. Harmful Algae 8: 637-644.
36. Zeng J, Yang L, Du H, Xia L, Jiang L, Wu J, Wang X (2009a) Bacterioplankton community structure in a eutrophic lake in relation to water chemistry. World J Microbiol Biotechnol 25: 763-772.
37. Zeng J, Yang L, Li J, Liang Y, Xiao L, Jiang L, Zhao D (2009b) Vertical distribution of bacterial community structure in the sediments of two eutrophic lakes revealed by denaturing gradient gel electrophoresis (DGGE) and multivariate analysis techniques. World J Microbiol Biotechnol 25: 225-233.
38. Zhao X, Yang L, Yu Z, Peng N, Xiao L, Yin D, Qin B (2008) Characterization of depth-related microbial communities in lake sediment by denaturing gradient gel electrophoresis of amplified 16S rRNA fragments. J Environ Sci 20: 224-230.