Robertsonian fusions, pericentromeric repeat organization and evolution: A case study within a highly polymorphic rodent species, Gerbillus nigeriae

Chromosome Research

Volumn 18, Issue 4, 2010, Pages 473-486

  Gauthier, Philippe ^a   Hima, Karmadine ^a,b   Dobigny, Gauthier ^a,b  

^a INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^b IRD   (Niger)

Author keywords

centric fusions; centromere; chromosome evolution; Gerbillinae; Muridae; repeat evolution; satellite DNA

Indexed keywords

MONOMER; PROTEIN; PROTEIN GERB1; PROTEIN GERB2; SATELLITE DNA; UNCLASSIFIED DRUG; HYBRID PROTEIN;

ANIMAL CELL; ANIMAL EXPERIMENT; ARTICLE; CENTROMERE; DIPLOIDY; EVOLUTION; FEMALE; GENE FUSION; GENE LOSS; GENE SEQUENCE; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GERBIL; HETEROLOGOUS EXPRESSION; KARYOTYPE; MALE; MOLECULAR CLONING; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; ANIMAL; GENETICS; GENOME; NUCLEOTIDE REPEAT;

ANIMALS; CENTROMERE; EVOLUTION; GENOME; GERBILLINAE; POLYMORPHISM, GENETIC; PROTEINS; RECOMBINANT FUSION PROTEINS; REPETITIVE SEQUENCES, NUCLEIC ACID; BIOLOGICAL EVOLUTION;

GERBILLINAE; GERBILLUS NIGERIAE; MAMMALIA; MURIDAE; MUS MUSCULUS; ROBERTSONIA; RODENTIA;

EID: 77954457747     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-010-9128-9     Document Type: Article

References (60)

1. D Avner E Heard 2001 X-chromosome inactivation: counting, choice and initiation Nat Genet 2 59 67 1:CAS:528:DC%2BD3MXisVGjs7k%3D
2. K Bâ M Thiam G Dobigny, et al. 2006 Hypothesis on the origin of invasion of Senegal by Gerbillus nigeriae based on chromosomal data Mammalia 70 303 305 10.1515/MAMM.2006.047 (Pubitemid 47044796)
3. A Banaszek JRE Taylor D Ochocinska W Chetnicki 2009 Robertsonian polymorphism in the common shrew (Sorex araneus L.) and selective advantage of heteroygotes indicated by their higher maximum metabolic rates Heredity 102 155 162 10.1038/hdy.2008.102 18827836 1:CAS:528:DC%2BD1MXotVCgtg%3D%3D
4. H-J Bandelt P Forster A Röhl 1999 Median-joining networks for inferring intraspecific phylogenies Mol Biol Evol 16 37 48 10331250 1:CAS:528:DyaK1MXjvVGltA%3D%3D
5. R Bandyopadhyay SA Berend SL Page KHA Choo LG Shaffer 2001 Satellite III sequences on 14p and their relevance to Roberstonian translocation formation Chromosome Res 9 235 242 10.1023/A:1016652621226 11330398 1:CAS:528: DC%2BD3MXjtFSjsb8%3D (Pubitemid 32299569)
6. Bayes JJ, Malik HS (2008) The evolution of centromeric DNA sequences. In: Encyclopedia of life sciences. J. Wiley J and Sons, Ltd, Chichester
7. A Bonnet-Garnier S Lacaze JF Beckers HM Berland A Pinton M Yerle A Ducos 2008 Meiotic segregation analysis in cow carrying the t(1;29) Robertsonian translocation Cytogenet Genome Res 120 91 96 10.1159/000118744 18467829 1:STN:280:DC%2BD1czgs1yltQ%3D%3D (Pubitemid 351665392)
8. R Castiglia S Garagna V Merico N Oguge M Corti 2006 Cytogenetics if a new cytotype of African Mus (subgenus Nannomys) minutoides (Rodentia, Muridae) from Kenya: C- and G- banding and distribution of (TTAGGG)n telomeric sequences Chromosome Res 14 587 594 10.1007/s10577-006-1054-5 16823620 1:CAS:528:DC%2BD28XmsFOlsrw%3D (Pubitemid 44015128)
9. R Chaves R Adega JS Heslop-Harrison H Guedes-Pinto J Wienberg 2003 Complex satellite DNA reshuffling in the polymorphic t(1;29) Robertsonian translocation and evolutionarily derived chromosomes in cattle Chromosome Res 11 641 648 10.1023/A:1025952507959 14606626 1:CAS:528:DC%2BD3sXns1Cmsr4%3D (Pubitemid 37323625)
10. KH Choo B Vissel R Brown RG Filby E Earle 1988 Homologous alpha satellite sequences on human acrocentric chromosomes with selectivity for chromosomes 13, 14 and 21: implications for recombination between nonhomologues and Robertsonian translocations Nucl Acids Res 16 1273 1284 10.1093/nar/16.4.1273 2831495 1:CAS:528:DyaL1cXhsVClsrs%3D
11. G Dobigny A Nomao JC Gautun 2002 A cytotaxonomic survey of rodents from Niger: implications for systematics, biodiversity and biogeography Mammalia 66 495 523 10.1515/mamm.2002.66.4.495
12. G Dobigny V Aniskin L Granjon R Cornette V Volobouev 2005 Recent radiation in West African Taterillus (Rodentia, Gerbillinae): the concerted role of chromosome and climatic changes Heredity 95 358 368 10.1038/sj.hdy.6800730 16106262 1:STN:280:DC%2BD2MrntFGktg%3D%3D (Pubitemid 41548411)
13. EP Evans G Breckon CE Ford 1963 An air-drying method for meiotic preparations from mammalian testes Cytogenetics 3 289 294 10.1159/000129818
14. S Garagna D Broccoli CA Redi JB Searle HJ Cooke E Capanna 1995 Robertsonian metacentrics of the house mouse lose telomeric sequences but retain some minor satellite sequences DNA in the pericentromeric area Chromosoma 103 685 692 10.1007/BF00344229 7664615 1:CAS:528:DyaK2MXosFCitbw%3D
15. S Garagna N Marziliano M Zuccotti JB Searle E Capanna CA Redi 2001 Pericentromeric organization at the fusion point of mouse Robertsonian translocation chromosomes Proc Nat Acad Sci USA 98 171 175 10.1073/pnas.98.1.171 11136254 1:CAS:528:DC%2BD3MXkslKqtw%3D%3D (Pubitemid 32095882)
16. S Garagna M Zuccotti E Capanna CA Redi 2002 High-resolution organization of mouse telomeric and pericentromeric DNA Cytogenet Genome Res 96 125 129 10.1159/000063028 12438788 1:CAS:528:DC%2BD38Xns1ejsbo%3D (Pubitemid 37456590)
17. Gardner RJM, Sutherland GR et al (1996) Chromosome abnormalities and genetic counseling. Oxford Monographs on Medical Genetics n°29, Oxford University Press, New York and Oxford, p 478
18. RS Hansen 2003 X inactivation-specific methylation of LINE-1 elements by DNMTB3B: implications for the Lyon repeat hypothesis Hum Mol Genet 12 2559 2567 10.1093/hmg/ddg268 12925568 1:CAS:528:DC%2BD3sXnsVektLg%3D (Pubitemid 37220420)
19. N Hartmann H Scherthan 2004 Characterization of ancestral chromosome fusion points in the Indian muntjac deer Chromosoma 112 213 220 10.1007/s00412-003-0262-4 14648169 1:CAS:528:DC%2BD2cXhsFyrs74%3D (Pubitemid 38396965)
20. JW Ijdo RA Wells A Baldini ST Reeders 1991 Improved telomere detection using a telomere repeat probe (TTAGGG)n generated by PCR Nucl Acids Res 19 4780 10.1093/nar/19.17.4780 1891373 1:CAS:528:DyaK3MXmtVSgsL8%3D
21. P Kalitsis B Griffiths KHA Choo 2006 Mouse telocentric sequences reveal a high rate of homogenization and possible role in Robertsonian translocation Proc Nat Acad Sci USA 103 8786 8791 10.1073/pnas.0600250103 16731628 1:CAS:528:DC%2BD28XlvVCiu7Y%3D (Pubitemid 43878097)
22. J Koch 1996 Primed in situ Labeling as a fast and sensitive method for the detection of specific DNA sequences in chromosomes and nuclei Methods Comp Methods Enzymol 9 122 128 10.1006/meth.1996.0016 1:CAS:528:DyaK28XitVahtbs%3D (Pubitemid 26125917)
23. YC Li C Lee TH Hsu SY Li CC Lin 2000 Direct vizualisation of the genomic distribution and organization of two cervid centromeric satellite DNA families Cytogenet Cell Genet 89 192 198 10.1159/000015611 10965121 1:CAS:528: DC%2BD3cXmsF2msLw%3D
24. M Lyon 2000 LINE-1 elements and X chromosome inactivation: a function for "junk" DNA? Proc Nat Acad Sci USA 97 6248 6249 10.1073/pnas.97.12. 6248 10841528 1:CAS:528:DC%2BD3cXktFWqu74%3D (Pubitemid 30412697)
25. X Mao W Nie J Wang, et al. 2008 Comparative cytogenetics of bats (Chiroptera): the prevalence of Robertsonian translocations limits the power of chromosomal characters in resolving inter-family phylogenetic relationships Chromosome Res 16 129 143 10.1007/s10577-007-1206-2 1:CAS:528: DC%2BD1cXitlOjtbY%3D (Pubitemid 351294782)
26. B Modi DS Gallagher JE Womack 1996 Evolutionary histories of highly repeated DNA families among the Artiodactyla (Mammalia) J Mol Evol 42 337 349 10.1007/BF02337544 8661995 1:CAS:528:DyaK28XisFSksLo%3D
27. Musser GG, Carleton MD (2005) Gerbillus nigeriae. In: Wilson DE, Reeder DAM (eds) Mammal species of the World: a taxonomic and geographic reference, vol. 2. The John Hopkins Univ. Press, p 1230
28. I Nanda S Schneider-Rasp H Winking M Schmid 1995 Loss of telomeric sites in the chromosomes of Mus musculus domesticus (Rodentia: Muridae) during Robertsonian rearrangements Chromosome Res 3 399 409 10.1007/BF00713889 8528584 1:CAS:528:DyaK2MXnslemt7g%3D
29. Nomao A (2002) Contribution à la connaissance des rongeurs du Niger. Caractéristiques biologiques et écologiques d'une population de Gerbillus nigeriae (Rodentia, Gerbillinae) dans la ferme de Kolo. PhD Thesis, Unov. Abdou Moumouni, Niamey, Niger
30. J Pialek HC Hauffe JB Searle 2005 Chromosomal variation in the house mouse Biol J Linnean Soc 85 535 563 10.1111/j.1095-8312.2005.00454.x (Pubitemid 40441058)
31. RV Rambau TJ Robinson R Stanyon 2003 Molecular genetics of Rhabdomys pumilio subspecies boundaries: mtDNA phylogeography and karyotypic analysis by fluorescence in situ hybridization Mol Phylogenet Evol 28 564 573 10.1016/S1055-7903(03)00058-7 12927139 1:CAS:528:DC%2BD3sXmt1egtr0%3D (Pubitemid 37436123)
32. CA Redi S Garagna M Zuccotti 1990 Robertsonian chromosome formation and fixation: the genomic scenario Biol J Linnean Soc 41 235 255 10.1111/j.1095-8312.1990.tb00833.x
33. WRB Robertson 1916 Chromosome studies. I. Taxonomic relationships shown in the chromosomes of Tettigidae and Acrididae. V-shaped chromosomes and their significance in Acrididae, Locustidae and Gryllidae: chromosomes and variation J Morph 27 179 331 10.1002/jmor.1050270202
34. T Robinson FFB Elder 1993 Cytogenetics: its role in wildlife management and the genetic conservation if mammals Biol Cons 63 47 51 10.1016/0006-3207(93) 90072-9
35. G Roizes 2006 Human centromeric alphoid domains are periodically homogenized: mechanism and implications for centromere functioning Nucl Acid Res 34 1912 1924 10.1093/nar/gkl137 1:CAS:528:DC%2BD28XjslOjs7s%3D
36. A Ropiquet M Gerbault-Seureau JL Deuve C Gilbert E Pagacova N Chai J Rubes A Hassanin 2008 Chromosome evolution in the subtribe Bovina (Mammalia, Bovidae): the karyotype of the Cambodian banteng (Bos javanicus birmanicus) suggests that Robertsonian translocations are related to interspecific hybridization Chromosome Res 16 1107 1118 10.1007/s10577-008-1262-2 18937038 1:CAS:528:DC%2BD1cXhsFarsrfK
37. MK Rudd GA Wray HF Willard 2006 The evolutionary dynamics of α-satellite Genome Res 16 88 96 10.1101/gr.3810906 16344556 1:CAS:528:DC%2BD28XhslChtLk%3D (Pubitemid 43048937)
38. RD Sage B Atchley E Capanna 1993 House mice as models in systematic biology Syst Biol 42 523 561
39. MA Sans-Fuentes MJ Lopez-Fuster J Ventura A Diez-Noguera T Cambrias 2005 Effect of Robertsonian translocations on the motor activity rhythm in the house mouse Behavior Genet 35 603 613 10.1007/s10519-005-5375-5 (Pubitemid 41355978)
40. H Scherthan 1990 Localization of the repetitive telomeric sequence (TTAGGG)n in two muntjac species and implications for their karyotype evolution Cytogenet Cell Genet 53 115 117 10.1159/000132908 2369836 1:CAS:528: DyaK3cXls1Kmsb0%3D
41. JH Schroder I-S Otten 1985 Increase aggressiveness of male mice carrying a reciprocal translocation, T(10, 13), in the heterozygous state Behavior Genet 15 43 51 10.1007/BF01071931 1:STN:280:DyaL2M7nsVWrtw%3D%3D (Pubitemid 15147432)
42. M Seabright 1971 A rapid banding technique for human chromosome Lancet 2 971 972 10.1016/S0140-6736(71)90287-X 4107917 1:STN:280:DyaE38%2FltFGntA%3D%3D
43. VA Shepelev AA Alexandrov YB Yurov IA Alexandrov 2009 The evolutionary origin of man can be traced in the layers of defunct ancestral satellites flanking the active centromeres of human chromosomes PLoS Genet 5 e1000641 10.1371/journal.pgen.1000641 19749981 1:CAS:528:DC%2BD1MXhtFKrsrfE
44. AT Sumner 1972 A simple technique for demonstrating centromeric heterochromatin Exp Cell Res 7 304 306 10.1016/0014-4827(72)90558-7
45. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599 10.1093/molbev/msm092 17488738 1:CAS:528:DC%2BD2sXpsVGrsL8%3D (Pubitemid 47236692)
46. M Thiam K Bâ JM Duplantier 2008 Impact of climatic changes on small mammal communities in the Sahel (West Africa) as evidenced by owl pellet analysis African Zool 43 135 143 10.3377/1562-7020-43.2.135
47. M Tranier 1975 Originalité du caryotype de Gerbillus nigeriae (Rongeurs, Gerbillidés) Mammalia 39 703 704 10.1515/mamm.1975.39.4.703 1225680 1:STN:280:DyaE287ovVahsA%3D%3D
48. VA Trifonov R Stanyon AI Nesterenko, et al. 2008 Multi-directional cross-species painting illuminates the history of karyotypic evolution in Perissodactyla Chromosome Res 16 89 107 10.1007/s10577-007-1201-7 18293107 1:CAS:528:DC%2BD1cXitlOjtbo%3D (Pubitemid 351294778)
49. M Ventura M Boniotto MF Cardone, et al. 2001 Characterization of a highly repeated DNA sequence family in five species of the genus Eulemur Gene 275 305 310 10.1016/S0378-1119(01)00653-9 11587858 1:CAS:528:DC%2BD3MXnt1Shs7g%3D (Pubitemid 32918360)
50. F Veyrunes G Dobigny F Yang, et al. 2006 Phylogenomics of the genus Mus (Rodentia, Muridae): extensive genome repatterning is not restricted to the house mouse Proc Roy Soc London B 273 2925 2934 10.1098/rspb.2006.3670 (Pubitemid 46622422)
51. E Viegas-Péquignot T Benazzou B Dutrillaux F Petter 1982 Complex evolution of sex chromosomes in Gerbillidae (Rodentia) Cytogenet Cell Genet 34 158 167 10.1159/000131804 7151487
52. E Viegas-Péquignot T Benazzou M Prod'Homme B Dutrillaux F Petter 1984 Characterization of a very complex constitutive heterochromatin in two Gerbillus species (Rodentia) Chromosoma 89 42 47 10.1007/BF00302349 6697817 (Pubitemid 14158171)
53. V Volobouev E Viegas-Péquignot F Petter JC Gautun B Sicard B Dutrillaux 1988 Complex chromosomal polymorphism in Gerbillus nigeriae (Rodentia, Gerbillidae) J Mammal 69 131 134 10.2307/1381757
54. V Volobouev N Vogt E Viegas-Péquignot B Malfoy B Dutrillaux 1995 Characterization and chromosomal location of two repeated DNAs in three Gerbillus species Chromosoma 104 252 259 10.1007/BF00352256 8565701 1:CAS:528:DyaK28XhtVyjsb8%3D
55. V Volobouev VM Aniskin E Lecompte JF Ducroz 2002 Patterns of karyotype evolution in complexes of sibling species within three genera of African murid rodents inferred from the comparison of cytogenetic and molecular data Cytogenet Genome Res 96 261 275 10.1159/000063049 12438808 1:CAS:528:DC%2BD38Xns1ejtLc%3D (Pubitemid 37456608)
56. PD Waters G Dobigny AT Pardini TJ Robinson 2004 LINE-1 distribution in Afrotheria and Xenarthra: implications for understanding the evolution of LINE-1 in eutherian genomes Chromosoma 113 137 144 10.1007/s00412-004-0301-9 15338236 1:CAS:528:DC%2BD2cXntV2htLk%3D (Pubitemid 39386403)
57. PD Waters A Ruiz-Herrera G Dobigny M Garcia-Caldès TJ Robinson 2007 Sex chromosomes of basal placental mammals Chromosoma 116 511 518 10.1007/s00412-007-0116-6 17602234 (Pubitemid 350120987)
58. HA Wichman CT Payne OA Ryder MJ Hamilton M Maltbie RJ Baker 1991 Genomic distribution of heterochromatic sequences in equids: implications to rapid chromosomal evolution J Heredity 82 369 377 1:CAS:528:DyaK38Xlt1ektQ%3D%3D
59. JM Wojcik PM Borodin S Fedyk, et al. 2003 The list of the chromosome races of the common shrew Sorex araneus (updated 2002) Mammalia 67 169 178 10.1515/mamm.2003.67.2.169
60. F Yang PCM O'Brien J Wienberg H Neitzel CC Lin MA Ferguson-Smith 1997 Chromosomal evolution of the Chinese muntjac (Muntiacus reevesi) Chromosoma 106 37 43 10.1007/s004120050222 9169585 1:CAS:528:DyaK2sXlt1Gjs7w%3D (Pubitemid 27399624)