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Volumn 5, Issue 9, 2009, Pages

The evolutionary origin of man can be traced in the layers of defunct ancestral alpha satellites flanking the active centromeres of human chromosomes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CENTROMERE; CHROMOSOME 17; CHROMOSOME 8; CHROMOSOME STRUCTURE; CLADISTICS; EVOLUTION; HUMAN; PHYLOGENY; X CHROMOSOME; ANIMAL; CLASSIFICATION; GENETICS; HUMAN CHROMOSOME; MALE; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PRIMATE;

EID: 70349694121     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1000641     Document Type: Article
Times cited : (50)

References (46)
  • 1
    • 0034879060 scopus 로고    scopus 로고
    • Alpha-satellite DNA of primates: Old and new families
    • Alexandrov I, Kazakov A, Tumeneva I, Shepelev V, Yurov Y (2001) Alpha satellite DNA of primates: old and new families. Chromosoma 110: 253-266. (Pubitemid 32755020)
    • (2001) Chromosoma , vol.110 , Issue.4 , pp. 253-266
    • Alexandrov, I.1    Kazakov, A.2    Tumeneva, I.3    Shepelev, V.4    Yurov, Y.5
  • 2
    • 0242594491 scopus 로고    scopus 로고
    • Interspersed repeats are found predominantly in the "old" alpha satellite families
    • Kazakov AE, Shepelev VA, Tumeneva IG, Alexandrov AA, Yurov YB, et al. (2003) Interspersed repeats are found predominantly in the "old" alpha satellite families. Genomics 82: 619-627.
    • (2003) Genomics , vol.82 , pp. 619-627
    • Kazakov, A.E.1    Shepelev, V.A.2    Tumeneva, I.G.3    Alexandrov, A.A.4    Yurov, Y.B.5
  • 3
    • 0035812788 scopus 로고    scopus 로고
    • Genomic and genetic definition of a functional human centromere
    • DOI 10.1126/science.1065042
    • Schueler MG, Higgins AW, Rudd MK, Gustashaw K, Willard HF (2001) Genomic and genetic definition of a functional human centromere. Science 294: 109-115. (Pubitemid 32952957)
    • (2001) Science , vol.294 , Issue.5540 , pp. 109-115
    • Schueler, M.G.1    Higgins, A.W.2    Rudd, M.K.3    Gustashaw, K.4    Willard, H.F.5
  • 5
    • 0029768675 scopus 로고    scopus 로고
    • Topoisomerase II alpha is associated with the mammalian centromere in a cell cycle- and species-specific manner and is required for proper centromere/kinetochore structure
    • Rattner JB, Hendzel MJ, Furbee CS, Muller MT, Bazett-Jones DP (1996) Topoisomerase II alpha is associated with the mammalian centromere in a cell cycle- and species-specific manner and is required for proper centromere/kinetochore structure. J Cell Biol 134: 1097-1107.
    • (1996) J Cell Biol , vol.134 , pp. 1097-1107
    • Rattner, J.B.1    Hendzel, M.J.2    Furbee, C.S.3    Muller, M.T.4    Bazett-Jones, D.P.5
  • 6
    • 13544254815 scopus 로고    scopus 로고
    • Topoisomerase II: Untangling its contribution at the centromere
    • Porter AC, Farr CJ (2004) Topoisomerase II: untangling its contribution at the centromere. Chromosome Res 12: 569-583.
    • (2004) Chromosome Res , vol.12 , pp. 569-583
    • Porter, A.C.1    Farr, C.J.2
  • 7
    • 33745746347 scopus 로고    scopus 로고
    • Coordinated requirements of human topo II and cohesin for metaphase centromere alignment under Mad2-dependent spindle checkpoint surveillance
    • DOI 10.1091/mbc.E05-11-1089
    • Toyoda Y, Yanagida M (2006) Coordinated requirements of human topo II and cohesin for metaphase centromere alignment under Mad2-dependent spindle checkpoint surveillance. Mol Biol Cell 17: 2287-2302. (Pubitemid 44011744)
    • (2006) Molecular Biology of the Cell , vol.17 , Issue.5 , pp. 2287-2302
    • Toyoda, Y.1    Yanagida, M.2
  • 8
    • 33845981777 scopus 로고    scopus 로고
    • PICH, a Centromere-Associated SNF2 Family ATPase, Is Regulated by Plk1 and Required for the Spindle Checkpoint
    • DOI 10.1016/j.cell.2006.11.041, PII S0092867406015510
    • Baumann C, Körner R, Hofmann K, Nigg EA (2007) PICH, a centromere-associated SNF2 family ATPase, is regulated by Plk1 and required for the spindle checkpoint. Cell 128: 101-114. (Pubitemid 46048886)
    • (2007) Cell , vol.128 , Issue.1 , pp. 101-114
    • Baumann, C.1    Korner, R.2    Hofmann, K.3    Nigg, E.A.4
  • 9
    • 33845975675 scopus 로고    scopus 로고
    • Polo delivers a PICH to the kinetochore
    • Yen TJ (2007) Polo delivers a PICH to the kinetochore. Cell 128: 20-21.
    • (2007) Cell , vol.128 , pp. 20-21
    • Yen, T.J.1
  • 10
    • 34547192058 scopus 로고    scopus 로고
    • BLM is required for faithful chromosome segregation and its localization defines a class of ultrafine anaphase bridges
    • Chan KL, North PS, Hickson ID (2007) BLM is required for faithful chromosome segregation and its localization defines a class of ultrafine anaphase bridges. EMBO J 26: 3397-3409.
    • (2007) EMBO J , vol.26 , pp. 3397-3409
    • Chan, K.L.1    North, P.S.2    Hickson, I.D.3
  • 11
    • 37249051376 scopus 로고    scopus 로고
    • Depletion of topoisomerase IIalpha leads to shortening of the metaphase interkinetochore distance and abnormal persistence of PICH-coated anaphase threads
    • DOI 10.1242/jcs.013730
    • Spence JM, Phua HH, Mills W, Carpenter AJ, Porter AC, et al. (2007) Depletion of topoisomerase IIalpha leads to shortening of the metaphase interkinetochore distance and abnormal persistence of PICH-coated anaphase threads. J Cell Sci 120: 3952-3964. (Pubitemid 350269401)
    • (2007) Journal of Cell Science , vol.120 , Issue.22 , pp. 3952-3964
    • Spence, J.M.1    Phua, H.H.2    Mills, W.3    Carpenter, A.J.4    Porter, A.C.G.5    Farr, C.J.6
  • 12
    • 41149168802 scopus 로고    scopus 로고
    • Persistence of DNA threads in human anaphase cells suggests late completion of sister chromatid decatenation
    • Wang LH, Schwarzbraun T, Speicher MR, Nigg EA (2008) Persistence of DNA threads in human anaphase cells suggests late completion of sister chromatid decatenation. Chromosoma 117: 123-135.
    • (2008) Chromosoma , vol.117 , pp. 123-135
    • Wang, L.H.1    Schwarzbraun, T.2    Speicher, M.R.3    Nigg, E.A.4
  • 13
    • 25444510063 scopus 로고    scopus 로고
    • Topoisomerase II cleavage activity within the human D11Z1 and DXZ1 alpha-satellite arrays
    • DOI 10.1007/s10577-005-1003-8
    • Spence JM, Fournier RE, Oshimura M, Regnier V, Farr CJ (2005) Topoisomerase II cleavage activity within the human D11Z1 and DXZ1 alpha-satellite arrays. Chromosome Res 13: 637-648. (Pubitemid 41367119)
    • (2005) Chromosome Research , vol.13 , Issue.6 , pp. 637-648
    • Spence, J.M.1    Fournier, R.E.K.2    Oshimura, M.3    Regnier, V.4    Farr, C.J.5
  • 14
    • 0034574442 scopus 로고    scopus 로고
    • Mapping of a human centromere onto the DNA by topoisomerase II cleavage
    • Floridia G, Zatterale A, Zuffardi O, Tyler-Smith C (2000) Mapping of a human centromere onto the DNA by topoisomerase II cleavage. EMBO Rep 1: 489-493.
    • (2000) EMBO Rep , vol.1 , pp. 489-493
    • Floridia, G.1    Zatterale, A.2    Zuffardi, O.3    Tyler-Smith, C.4
  • 15
    • 0036790633 scopus 로고    scopus 로고
    • Co-localization of centromere activity, proteins and topoisomerase II within a subdomain of the major human X alpha-satellite array
    • Spence JM, Critcher R, Ebersole TA, Valdivia MM, Earnshaw WC, et al. (2002) Co-localization of centromere activity, proteins and topoisomerase II within a subdomain of the major human X alpha-satellite array. EMBO J 21: 5269-5280.
    • (2002) EMBO J , vol.21 , pp. 5269-5280
    • Spence, J.M.1    Critcher, R.2    Ebersole, T.A.3    Valdivia, M.M.4    Earnshaw, W.C.5
  • 16
    • 0036021789 scopus 로고    scopus 로고
    • Active, but not inactive, human centromeres display topoisomerase II activity in vivo
    • DOI 10.1023/A:1016571825025
    • Andersen CL, Wandall A, Kjeldsen E, Mielke C, Koch J (2002) Active, but not inactive, human centromeres display topoisomerase II activity in vivo. Chromosome Res 10: 305-312. (Pubitemid 34831919)
    • (2002) Chromosome Research , vol.10 , Issue.4 , pp. 305-312
    • Andersen, C.L.1    Wandall, A.2    Kjeldsen, E.3    Mielke, C.4    Koch, J.5
  • 18
    • 14244257657 scopus 로고    scopus 로고
    • Mms22p protects Saccharomyces cerevisiae from DNA damage induced by topoisomerase II
    • DOI 10.1093/nar/gki246
    • Baldwin EL, Berger AC, Corbett AH, Osheroff N (2005) Mms22p protects Saccharomyces cerevisiae from DNA damage induced by topoisomerase II. Nucleic Acids Res 33: 1021-1030. (Pubitemid 41430522)
    • (2005) Nucleic Acids Research , vol.33 , Issue.3 , pp. 1021-1030
    • Baldwin, E.L.1    Berger, A.C.2    Corbett, A.H.3    Osheroff, N.4
  • 19
    • 33645242115 scopus 로고    scopus 로고
    • BLAP75/RMI1 promotes the BLM-dependent dissolution of homologous recombination intermediates
    • Wu L, Bachrati CZ, Ou J, Xu C, Yin J, et al. (2006) BLAP75/RMI1 promotes the BLM-dependent dissolution of homologous recombination intermediates. Proc Natl Acad Sci U S A 103: 4068-4073.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 4068-4073
    • Wu, L.1    Bachrati, C.Z.2    Ou, J.3    Xu, C.4    Yin, J.5
  • 20
    • 33751216131 scopus 로고    scopus 로고
    • Centromeres put epigenetics in the driver's seat
    • Dawe RK, Henikoff S (2006) Centromeres put epigenetics in the driver's seat. Trends Biochem Sci 31: 662-669.
    • (2006) Trends Biochem Sci , vol.31 , pp. 662-669
    • Dawe, R.K.1    Henikoff, S.2
  • 21
    • 0035839066 scopus 로고    scopus 로고
    • The centromere paradox: Stable inheritance with rapidly evolving DNA
    • DOI 10.1126/science.1062939
    • Henikoff S, Ahmad K, Malik HS (2001) The centromere paradox: stable inheritance with rapidly evolving DNA. Science 293: 1098-1102. (Pubitemid 32758083)
    • (2001) Science , vol.293 , Issue.5532 , pp. 1098-1102
    • Henikoff, S.1    Ahmad, K.2    Malik, H.S.3
  • 22
    • 34848890323 scopus 로고    scopus 로고
    • Organization and evolution of primate centromeric DNA from whole-genome shotgun sequence data
    • DOI 10.1371/journal.pcbi.0030181
    • Alkan C, Ventura M, Archidiacono N, Rocchi M, Sahinalp SC, et al. (2007) Organization and evolution of primate centromeric DNA from whole-genome shotgun sequence data. PLoS Comput Biol 3: 1807-1818. doi:10.1371/journal.pcbi.0030181. (Pubitemid 47502985)
    • (2007) PLoS Computational Biology , vol.3 , Issue.9 , pp. 1807-1818
    • Alkan, C.1    Ventura, M.2    Archidiacono, N.3    Rocchi, M.4    Sahinalp, S.C.5    Eichler, E.E.6
  • 23
    • 8444233259 scopus 로고    scopus 로고
    • The role of unequal crossover in alpha-satellite DNA evolution: A computational analysis
    • DOI 10.1089/cmb.2004.11.933
    • Alkan C, Eichler EE, Bailey JA, Sahinalp SC, Tuzun E (2004) The role of unequal crossover in alpha-satellite DNA evolution: a computational analysis. J Comput Biol 11: 933-944. (Pubitemid 39488543)
    • (2004) Journal of Computational Biology , vol.11 , Issue.5 , pp. 933-944
    • Alkan, C.1    Eichler, E.E.2    Bailey, J.A.3    Sahinalp, S.C.4    Tuzun, E.5
  • 24
    • 30044449656 scopus 로고    scopus 로고
    • The evolutionary dynamics of alpha-satellite
    • Rudd MK, Wray GA, Willard HF (2006) The evolutionary dynamics of alpha-satellite. Genome Res 16: 88-96.
    • (2006) Genome Res , vol.16 , pp. 88-96
    • Rudd, M.K.1    Wray, G.A.2    Willard, H.F.3
  • 26
    • 0030599002 scopus 로고    scopus 로고
    • Evidence for selection in evolution of alpha satellite DNA: The central role of CENP-B/pJ alpha binding region
    • Romanova LY, Deriagin GV, Mashkova TD, Tumeneva IG, Mushegian AR, et al. (1996) Evidence for selection in evolution of alpha satellite DNA: the central role of CENP-B/pJ alpha binding region. J Mol Biol 261: 334-340.
    • (1996) J Mol Biol , vol.261 , pp. 334-340
    • Romanova, L.Y.1    Deriagin, G.V.2    Mashkova, T.D.3    Tumeneva, I.G.4    Mushegian, A.R.5
  • 28
    • 40749092486 scopus 로고    scopus 로고
    • Neocentromeres: New insights into centromere structure, disease development, and karyotype evolution
    • Marshall OJ, Chueh AC, Wong LH, Choo KH (2008) Neocentromeres: new insights into centromere structure, disease development, and karyotype evolution. Am J Hum Genet 82: 261-282.
    • (2008) Am J Hum Genet , vol.82 , pp. 261-282
    • Marshall, O.J.1    Chueh, A.C.2    Wong, L.H.3    Choo, K.H.4
  • 29
    • 0023066343 scopus 로고
    • Chromosome-specific subsets of human alpha satellite DNA: Analysis of sequence divergence within and between chromosomal subsets and evidence for an ancestral pentameric repeat
    • Willard HF, Waye JS (1987) Chromosome-specific subsets of human alpha satellite DNA: analysis of sequence divergence within and between chromosomal subsets and evidence for an ancestral pentameric repeat. J Mol Evol 25: 207-214.
    • (1987) J Mol Evol , vol.25 , pp. 207-214
    • Willard, H.F.1    Waye, J.S.2
  • 30
    • 0023692909 scopus 로고
    • The phylogeny of human chromosome specific alpha satellites
    • DOI 10.1007/BF00303039
    • Alexandrov IA, Mitkevich SP, Yurov YB (1988) The phylogeny of human chromosome specific alpha satellites. Chromosoma 96: 443-453. (Pubitemid 18178048)
    • (1988) Chromosoma , vol.96 , Issue.6 , pp. 443-453
    • Alexandrov, I.A.1    Mitkevich, S.P.2    Yurov, Y.B.3
  • 31
    • 30044433182 scopus 로고    scopus 로고
    • Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates
    • DOI 10.1101/gr.4001406
    • Khan H, Smit A, Boissinot S (2006) Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. Genome Res 16: 78-87. (Pubitemid 43048936)
    • (2006) Genome Research , vol.16 , Issue.1 , pp. 78-87
    • Khan, H.1    Smit, A.2    Boissinot, S.3
  • 34
    • 0034705095 scopus 로고    scopus 로고
    • The many faces of DNA polymerases: Strategies for mutagenesis and for mutational avoidance
    • Friedberg EC, Feaver WJ, Gerlach VL (2000) The many faces of DNA polymerases: strategies for mutagenesis and for mutational avoidance. Proc Natl Acad Sci U S A 97: 5681-5683.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 5681-5683
    • Friedberg, E.C.1    Feaver, W.J.2    Gerlach, V.L.3
  • 35
    • 22244487288 scopus 로고    scopus 로고
    • Sivapithecus is east and Dryopithecus is west, and never the twain shall meet
    • Begun DR (2005) Sivapithecus is east and Dryopithecus is west, and never the twain shall meet. Anthropological Science 113: 53-64.
    • (2005) Anthropological Science , vol.113 , pp. 53-64
    • Begun, D.R.1
  • 36
    • 0032076660 scopus 로고    scopus 로고
    • Something from nothing: The evolution and utility of satellite repeats
    • Csink AK, Henikoff S (1998) Something from nothing: the evolution and utility of satellite repeats. Trends Genet 14: 200-204.
    • (1998) Trends Genet , vol.14 , pp. 200-204
    • Csink, A.K.1    Henikoff, S.2
  • 37
    • 0029118185 scopus 로고
    • Presence and abundance of CENP-B box sequences in great ape subsets of primate-specific alpha-satellite DNA
    • Haaf T, Mater AG, Wienberg J, Ward DC (1995) Presence and abundance of CENP-B box sequences in great ape subsets of primate-specific alpha-satellite DNA. J Mol Evol 41: 487-491.
    • (1995) J Mol Evol , vol.41 , pp. 487-491
    • Haaf, T.1    Mater, A.G.2    Wienberg, J.3    Ward, D.C.4
  • 38
    • 37449015481 scopus 로고    scopus 로고
    • CENP-B controls centromere formation depending on the chromatin context
    • Okada T, Ohzeki J, Nakano M, Yoda K, Brinkley WR, et al. (2007) CENP-B controls centromere formation depending on the chromatin context. Cell 131: 1287-1300.
    • (2007) Cell , vol.131 , pp. 1287-1300
    • Okada, T.1    Ohzeki, J.2    Nakano, M.3    Yoda, K.4    Brinkley, W.R.5
  • 40
    • 0032076906 scopus 로고    scopus 로고
    • Centromeric chromatin and epigenetic effects in kinetochore assembly
    • Wiens GR, Sorger PK (1998) Centromeric chromatin and epigenetic effects in kinetochore assembly. Cell 93: 313-316.
    • (1998) Cell , vol.93 , pp. 313-316
    • Wiens, G.R.1    Sorger, P.K.2
  • 41
    • 0004096749 scopus 로고
    • San Francisco: WH Freeman and Company
    • White MJD (1978) Modes of speciation. San Francisco: WH Freeman and Company. 455 p.
    • (1978) Modes of Speciation , pp. 455
    • White, M.J.D.1
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 43
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro HN, ed. New York: Academic Press
    • Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN, ed. Mammalian Protein Metabolism. New York: Academic Press. pp 21-132.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 44
    • 33746637933 scopus 로고    scopus 로고
    • Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences
    • Liu GE, Matukumalli LK, Sonstegard TS, Shade LL, Van Tassell CP (2006) Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences. BMC Genomics 7: 140.
    • (2006) BMC Genomics , vol.7 , pp. 140
    • Liu, G.E.1    Matukumalli, L.K.2    Sonstegard, T.S.3    Shade, L.L.4    Van Tassell, C.P.5
  • 45
    • 0028920059 scopus 로고
    • Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences
    • Smit AF, Toth G, Riggs AD, Jurka J (1995) Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences. J Mol Biol 246: 401-417.
    • (1995) J Mol Biol , vol.246 , pp. 401-417
    • Smit, A.F.1    Toth, G.2    Riggs, A.D.3    Jurka, J.4
  • 46
    • 44449161646 scopus 로고    scopus 로고
    • Rapid evolution of yeast centromeres in the absence of drive
    • Bensasson D, Zarowiecki M, Burt A, Koufopanou V (2008) Rapid evolution of yeast centromeres in the absence of drive. Genetics 178: 2161-2167.
    • (2008) Genetics , vol.178 , pp. 2161-2167
    • Bensasson, D.1    Zarowiecki, M.2    Burt, A.3    Koufopanou, V.4


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